Prupe.5G130400_v2.0.a1
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000212
Physical Location & Seq
Forward (+)
12598070 .. 12601165
3096 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G130400.1

Sequence Viewer

Length: 1500 bp
ATGGAAGAGATTATAGCCTCATCTTCTTCACCCCAATTTTGTCAAGAAACCTCAGCCACATGTCAACAGCGTCTCCAGTTCATAGTTCAGAACAGGCCCGAATGGTGGGTGTATGCGACTTTCTGGCAAGCCTCGAAAGACAGCAATGACCAAATCTCTTTGTCATGGGCTGGTGGCCATTTCAAAAGCTCCAAGGACTTGGCATCCAAGAGAAGCAACAAAGTGATGAACAACTACCAACCCAAATTTGGGTTCAACAATGTGGAGAGGAAGAAGGTGATTAACAGAGGATGTGCTGAATCTCTTTTCCCGGAAGACTTGGAGGACTTGGACATGAGGCTGGTGGATCATGGAGTTGGAGATGTTACTGACTCTGAGTGGTTTTACTTTTACAGCGTTTCTTTAACCCAGTCATTTGCTGCAGGCCATGCCACTAACAACATTTTGGGTCGAGCATTTTGTTCTGGTGGTTTTGTTTGGCTTGCAGGTGCTCATGAGCTTCAATTTTATGAGTGCGAGAGAGTGAAAGAAGCTAGAATGCATGGAATTCAAACTTTGGTTTGTATTGCAACTCCATGTGGGGTGCTTGAACTGGCTTCTCTGGATGTGATCAAAGAAGATTGGGGTCTTGTGCACCTGTCCAAATCACTCTTCGGATCAGAAAACAACAGGATCTCCAAGCAAGGCAGCCGTGACGGCAATGCACCTGTTCCTTTCCCGGAAAGTGGGATGTTTTCAGGACCTCAAAAAGACTTCCCCAGACAAGAGGGTGATACAAAAGAAGCTGCACCTATCAATATTGGTGGCTCCTCATCAGACTCACCTTCTGATTCTGTTGGCAATTTCACTTCTGAAAACACAGAGAGGACTCGATTGAAAAAGAGAGGAAGATCAACAAACCATGGACCAGGTAGAGAATCACAATTGTTAAACCATGTTGAGGCTGAGAGACAGAGGCGAGAGAAGCTTAACCATCGCTTCTACGTCCTCCGCTCTGTTGTTCCGAATGTGTCGAAGATGGACAGATCTTCTTTGCTTGCAGATGCTGTGGCATACATCAATCAACTCAAATCAAAGGTCGAAGAATTGGAGGCCAAAATCCAATCACAACCCCAAAATCCCAACATGGGAAATGTGAGCAATCTTGATCATCACAGCAGCCAAAGCACCAGCTCCATTGTTGATTTTCATCATTCAAGTAGTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAGGAGCTGGTGTTGTGGAAGTGGATGTAAAGATTTTGGGATCGGAAGCGATGATTCGTGTTCAGTGTCCAGATCAAGATTACCCATATGCTAAGTTGATGAATGCGCTCAAATCCCTGGGGTTACAAGTTTATCATGCAAGCATTTCAAGTGTAAAAGAGATGATGATTCAAGATATTGTGGCAAGAGTGCCTTATGGGTTCACTAGTGAGGAGGCCATGAGAATGGGTATTATAAAAAGGTGGTACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

500

Amino Acids

55.82

Weight (kDa)

6.55

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1481
AarI CACCTGC 1 cut(s) 476
Acc36I ACCTGC 1 cut(s) 476
AccBSI CCGCTC 1 cut(s) 993
AciI CCGC 1 cut(s) 991
AclWI GGATC 4 cut(s) 354, 664, 680, 1294
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 2 cut(s) 245, 546
AfaI GTAC 1 cut(s) 1493
AfiI CCNNNNNNNGG 6 cut(s) 105, 248, 249, 725, 940, 1127
AflIII ACRYGT 1 cut(s) 59
AgsI TTSAA 9 cut(s) 184, 256, 503, 551, 590, 877, 1197, 1395, 1418
AhlI ACTAGT 1 cut(s) 1451
AjnI CCWGG 2 cut(s) 907, 1362
AjuI GAANNNNNNNTTGG 4 cut(s) 236, 268, 635, 667
AluBI AGCT 7 cut(s) 189, 499, 533, 785, 967, 1173, 1253
AluI AGCT 7 cut(s) 189, 499, 533, 785, 967, 1173, 1253
Alw21I GWGCWC 2 cut(s) 493, 636
Alw26I GTCTC 2 cut(s) 77, 943
Alw44I GTGCAC 1 cut(s) 632
AlwI GGATC 4 cut(s) 354, 664, 680, 1294
AlwNI CAGNNNCTG 1 cut(s) 1046
AoxI GGCC 5 cut(s) 95, 175, 424, 1092, 1461
ApaLI GTGCAC 1 cut(s) 632
ApeKI GCWGC 4 cut(s) 419, 687, 785, 1158
ApoI RAATTY 2 cut(s) 245, 546
ArsI GACNNNNNNTTYG 2 cut(s) 1062, 1094
AspLEI GCGC 1 cut(s) 1354
AspS9I GGNCC 3 cut(s) 96, 740, 905
AsuC2I CCSGG 2 cut(s) 311, 719
AsuHPI GGTGA 4 cut(s) 21, 289, 782, 813
AvaII GGWCC 2 cut(s) 740, 905
BaeGI GKGCMC 1 cut(s) 636
BalI TGGCCA 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 321
Bbv12I GWGCWC 2 cut(s) 493, 636
BbvCI CCTCAGC 1 cut(s) 52
BbvI GCAGC 4 cut(s) 406, 699, 772, 1170
BccI CCATC 2 cut(s) 981, 1012
BceAI ACGGC 2 cut(s) 675, 712
BciT130I CCWGG 2 cut(s) 909, 1364
BclI TGATCA 2 cut(s) 609, 1147
BcnI CCSGG 2 cut(s) 311, 719
BcoDI GTCTC 2 cut(s) 77, 943
BcuI ACTAGT 1 cut(s) 1451
BfaI CTAG 3 cut(s) 534, 1452, 1498
BfmI CTRYAG 1 cut(s) 420
BfuAI ACCTGC 1 cut(s) 476
BglI GCCNNNNNGGC 1 cut(s) 696
BglII AGATCT 1 cut(s) 1025
BisI GCNGC 4 cut(s) 420, 688, 786, 1159
BlsI GCNGC 4 cut(s) 421, 689, 787, 1160
Bme1390I CCNGG 4 cut(s) 311, 719, 909, 1364
Bme18I GGWCC 2 cut(s) 740, 905
BmgT120I GGNCC 3 cut(s) 96, 740, 905
BmiI GGNNCC 1 cut(s) 808
BmrFI CCNGG 4 cut(s) 311, 719, 909, 1364
BmrI ACTGGG 1 cut(s) 403
BmsI GCATC 2 cut(s) 212, 1033
BmuI ACTGGG 1 cut(s) 403
BpiI GAAGAC 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 59
Bpu10I CCTNAGC 1 cut(s) 52
BpuMI CCSGG 2 cut(s) 311, 719
BsaBI GATNNNNATC 1 cut(s) 1188
BsaJI CCNNGG 4 cut(s) 192, 901, 1362, 1363
BsaXI ACNNNNNCTCC 6 cut(s) 57, 87, 659, 689, 1242, 1272
Bsc4I CCNNNNNNNGG 6 cut(s) 105, 248, 249, 725, 940, 1127
Bse1I ACTGG 3 cut(s) 76, 409, 597
Bse3DI GCAATG 2 cut(s) 151, 706
Bse8I GATNNNNATC 1 cut(s) 1188
BseBI CCWGG 2 cut(s) 909, 1364
BseDI CCNNGG 4 cut(s) 192, 901, 1362, 1363
BseGI GGATG 5 cut(s) 203, 296, 610, 735, 1276
BseJI GATNNNNATC 1 cut(s) 1188
BseLI CCNNNNNNNGG 6 cut(s) 105, 248, 249, 725, 940, 1127
BseMI GCAATG 2 cut(s) 151, 706
BseMII CTCAG 3 cut(s) 66, 366, 936
BseNI ACTGG 3 cut(s) 76, 409, 597
BseRI GAGGAG 2 cut(s) 799, 1472
BseSI GKGCMC 1 cut(s) 636
BseXI GCAGC 4 cut(s) 406, 699, 772, 1170
BsgI GTGCAG 1 cut(s) 771
BshFI GGCC 5 cut(s) 97, 177, 426, 1094, 1463
BsiHKAI GWGCWC 2 cut(s) 493, 636
BsiSI CCGG 2 cut(s) 311, 719
BslI CCNNNNNNNGG 6 cut(s) 105, 248, 249, 725, 940, 1127
BsmAI GTCTC 2 cut(s) 77, 943
BsmBI CGTCTC 1 cut(s) 77
BsmI GAATGC 2 cut(s) 543, 1354
BsnI GGCC 5 cut(s) 97, 177, 426, 1094, 1463
Bsp1286I GDGCHC 2 cut(s) 493, 636
Bsp143I GATC 9 cut(s) 346, 609, 656, 672, 890, 1025, 1147, 1286, 1318
Bsp19I CCATGG 1 cut(s) 901
BspACI CCGC 1 cut(s) 991
BspANI GGCC 5 cut(s) 97, 177, 426, 1094, 1463
BspCNI CTCAG 3 cut(s) 65, 367, 937
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 1 cut(s) 808
BspMAI CTGCAG 1 cut(s) 424
BspMI ACCTGC 1 cut(s) 476
BspPI GGATC 4 cut(s) 354, 664, 680, 1294
BsrBI CCGCTC 1 cut(s) 993
BsrDI GCAATG 2 cut(s) 151, 706
BsrI ACTGG 3 cut(s) 76, 409, 597
BssECI CCNNGG 4 cut(s) 192, 901, 1362, 1363
BssMI GATC 9 cut(s) 346, 609, 656, 672, 890, 1025, 1147, 1286, 1318
BssT1I CCWWGG 2 cut(s) 192, 901
Bst2UI CCWGG 2 cut(s) 909, 1364
Bst6I CTCTTC 1 cut(s) 656
BstAPI GCANNNNNTGC 1 cut(s) 428
BstC8I GCNNGC 5 cut(s) 129, 424, 483, 1038, 1387
BstDEI CTNAG 4 cut(s) 52, 375, 945, 1338
BstDSI CCRYGG 1 cut(s) 901
BstF5I GGATG 5 cut(s) 203, 296, 610, 735, 1276
BstHHI GCGC 1 cut(s) 1354
BstKTI GATC 9 cut(s) 349, 612, 659, 675, 893, 1028, 1150, 1289, 1321
BstMAI GTCTC 2 cut(s) 77, 943
BstMBI GATC 9 cut(s) 346, 609, 656, 672, 890, 1025, 1147, 1286, 1318
BstMWI GCNNNNNNNGC 4 cut(s) 428, 696, 964, 1164
BstNI CCWGG 2 cut(s) 909, 1364
BstNSI RCATGY 1 cut(s) 63
BstSCI CCNGG 4 cut(s) 309, 717, 907, 1362
BstSFI CTRYAG 1 cut(s) 420
BstSLI GKGCMC 1 cut(s) 636
BstV1I GCAGC 4 cut(s) 406, 699, 772, 1170
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 2 cut(s) 672, 1025
BstXI CCANNNNNNTGG 2 cut(s) 199, 1471
BstYI RGATCY 2 cut(s) 672, 1025
BsuRI GGCC 5 cut(s) 97, 177, 426, 1094, 1463
BtgI CCRYGG 1 cut(s) 901
BtgZI GCGATG 2 cut(s) 959, 1310
BtsCI GGATG 5 cut(s) 203, 296, 610, 735, 1276
BtsIMutI CAGTG 1 cut(s) 1316
BveI ACCTGC 1 cut(s) 476
Cac8I GCNNGC 5 cut(s) 129, 424, 483, 1038, 1387
CaiI CAGNNNCTG 1 cut(s) 1046
CciI TCATGA 1 cut(s) 493
CfoI GCGC 1 cut(s) 1354
Cfr13I GGNCC 3 cut(s) 96, 740, 905
CseI GACGC 1 cut(s) 59
CsiI ACCWGGT 1 cut(s) 907
Csp6I GTAC 1 cut(s) 1492
CspCI CAANNNNNGTGG 2 cut(s) 784, 819
CviQI GTAC 1 cut(s) 1492
DdeI CTNAG 4 cut(s) 52, 375, 945, 1338
DpnI GATC 9 cut(s) 348, 611, 658, 674, 892, 1027, 1149, 1288, 1320
DpnII GATC 9 cut(s) 346, 609, 656, 672, 890, 1025, 1147, 1286, 1318
EaeI YGGCCR 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 656
EarI CTCTTC 1 cut(s) 656
Eco130I CCWWGG 2 cut(s) 192, 901
Eco47I GGWCC 2 cut(s) 740, 905
EcoO109I RGGNCCY 1 cut(s) 740
EcoRI GAATTC 1 cut(s) 546
EcoRII CCWGG 2 cut(s) 907, 1362
EcoT14I CCWWGG 2 cut(s) 192, 901
EcoT22I ATGCAT 1 cut(s) 543
ErhI CCWWGG 2 cut(s) 192, 901
Esp3I CGTCTC 1 cut(s) 77
FalI AAGNNNNNCTT 2 cut(s) 1423, 1455
FauNDI CATATG 1 cut(s) 1333
FbaI TGATCA 2 cut(s) 609, 1147
Fnu4HI GCNGC 4 cut(s) 420, 688, 786, 1159
FokI GGATG 5 cut(s) 190, 303, 617, 742, 1283
Fsp4HI GCNGC 4 cut(s) 420, 688, 786, 1159
FspBI CTAG 3 cut(s) 534, 1452, 1498
GlaI GCGC 1 cut(s) 1353
GluI GCNGC 4 cut(s) 420, 688, 786, 1159
GsuI CTGGAG 1 cut(s) 59
HaeIII GGCC 5 cut(s) 97, 177, 426, 1094, 1463
HapII CCGG 2 cut(s) 311, 719
HgaI GACGC 1 cut(s) 59
HhaI GCGC 1 cut(s) 1354
Hin6I GCGC 1 cut(s) 1352
HinP1I GCGC 1 cut(s) 1352
HincII GTYRAC 1 cut(s) 65
HindII GTYRAC 1 cut(s) 65
HindIII AAGCTT 1 cut(s) 965
HinfI GANTC 8 cut(s) 299, 371, 818, 830, 868, 917, 1300, 1414
HpaII CCGG 2 cut(s) 311, 719
HphI GGTGA 4 cut(s) 21, 289, 782, 813
Hpy166II GTNNAC 3 cut(s) 65, 634, 1449
Hpy188I TCNGA 9 cut(s) 90, 376, 656, 661, 817, 829, 853, 1005, 1291
Hpy188III TCNNGA 8 cut(s) 44, 494, 602, 738, 1145, 1316, 1322, 1418
Hpy8I GTNNAC 3 cut(s) 65, 634, 1449
HpyAV CCTTC 2 cut(s) 268, 834
HpyCH4IV ACGT 1 cut(s) 984
HpyCH4V TGCA 9 cut(s) 422, 485, 541, 569, 634, 704, 788, 1040, 1385
HpyF10VI GCNNNNNNNGC 4 cut(s) 428, 696, 964, 1164
HpyF3I CTNAG 4 cut(s) 52, 375, 945, 1338
HpySE526I ACGT 1 cut(s) 984
HspAI GCGC 1 cut(s) 1352
Ksp22I TGATCA 2 cut(s) 609, 1147
Kzo9I GATC 9 cut(s) 346, 609, 656, 672, 890, 1025, 1147, 1286, 1318
LmnI GCTCC 4 cut(s) 194, 812, 1178, 1250
Lsp1109I GCAGC 4 cut(s) 406, 699, 772, 1170
LweI GCATC 2 cut(s) 212, 1033
MabI ACCWGGT 1 cut(s) 907
MaeI CTAG 3 cut(s) 534, 1452, 1498
MaeII ACGT 1 cut(s) 984
MaeIII GTNAC 3 cut(s) 364, 692, 1368
MalI GATC 9 cut(s) 348, 611, 658, 674, 892, 1027, 1149, 1288, 1320
MbiI CCGCTC 1 cut(s) 993
MboI GATC 9 cut(s) 346, 609, 656, 672, 890, 1025, 1147, 1286, 1318
MfeI CAATTG 1 cut(s) 923
MflI RGATCY 2 cut(s) 672, 1025
MhlI GDGCHC 2 cut(s) 493, 636
MlsI TGGCCA 1 cut(s) 177
MluCI AATT 7 cut(s) 35, 245, 503, 546, 841, 923, 1085
MluNI TGGCCA 1 cut(s) 177
MlyI GAGTC 3 cut(s) 365, 812, 862
MmeI TCCRAC 1 cut(s) 337
Mox20I TGGCCA 1 cut(s) 177
Mph1103I ATGCAT 1 cut(s) 543
MscI TGGCCA 1 cut(s) 177
MseI TTAA 4 cut(s) 282, 404, 929, 969
MslI CAYNNNNRTG 1 cut(s) 1469
Msp20I TGGCCA 1 cut(s) 177
MspI CCGG 2 cut(s) 311, 719
MspR9I CCNGG 4 cut(s) 311, 719, 909, 1364
MunI CAATTG 1 cut(s) 923
Mva1269I GAATGC 2 cut(s) 543, 1354
MvaI CCWGG 2 cut(s) 909, 1364
MwoI GCNNNNNNNGC 4 cut(s) 428, 696, 964, 1164
NciI CCSGG 2 cut(s) 311, 719
NcoI CCATGG 1 cut(s) 901
NdeI CATATG 1 cut(s) 1333
NdeII GATC 9 cut(s) 346, 609, 656, 672, 890, 1025, 1147, 1286, 1318
NlaIV GGNNCC 1 cut(s) 808
NmuCI GTSAC 1 cut(s) 692
NsiI ATGCAT 1 cut(s) 543
NspI RCATGY 1 cut(s) 63
PagI TCATGA 1 cut(s) 493
PaqCI CACCTGC 1 cut(s) 476
PasI CCCWGGG 1 cut(s) 1363
PciI ACATGT 1 cut(s) 59
PctI GAATGC 2 cut(s) 543, 1354
PfeI GAWTC 5 cut(s) 299, 830, 917, 1300, 1414
PfoI TCCNGGA 2 cut(s) 309, 717
PkrI GCNGC 4 cut(s) 421, 689, 787, 1160
PleI GAGTC 3 cut(s) 365, 812, 862
PpsI GAGTC 3 cut(s) 365, 812, 862
PpuMI RGGWCCY 1 cut(s) 740
PscI ACATGT 1 cut(s) 59
PsiI TTATAA 1 cut(s) 1481
Psp5II RGGWCCY 1 cut(s) 740
Psp6I CCWGG 2 cut(s) 907, 1362
PspGI CCWGG 2 cut(s) 907, 1362
PspN4I GGNNCC 1 cut(s) 808
PspPI GGNCC 3 cut(s) 96, 740, 905
PspPPI RGGWCCY 1 cut(s) 740
PstI CTGCAG 1 cut(s) 424
PstNI CAGNNNCTG 1 cut(s) 1046
PsuI RGATCY 2 cut(s) 672, 1025
RsaI GTAC 1 cut(s) 1493
RsaNI GTAC 1 cut(s) 1492
RseI CAYNNNNRTG 1 cut(s) 1469
SaqAI TTAA 4 cut(s) 282, 404, 929, 969
SatI GCNGC 4 cut(s) 420, 688, 786, 1159
Sau3AI GATC 9 cut(s) 346, 609, 656, 672, 890, 1025, 1147, 1286, 1318
Sau96I GGNCC 3 cut(s) 96, 740, 905
SchI GAGTC 3 cut(s) 365, 812, 862
ScrFI CCNGG 4 cut(s) 311, 719, 909, 1364
SduI GDGCHC 2 cut(s) 493, 636
SexAI ACCWGGT 1 cut(s) 907
SfaNI GCATC 2 cut(s) 212, 1033
SfcI CTRYAG 1 cut(s) 420
SinI GGWCC 2 cut(s) 740, 905
SmiMI CAYNNNNRTG 1 cut(s) 1469
SpeI ACTAGT 1 cut(s) 1451
Sse9I AATT 7 cut(s) 35, 245, 503, 546, 841, 923, 1085
SsiI CCGC 1 cut(s) 991
SspI AATATT 1 cut(s) 799
SspMI CTAG 3 cut(s) 534, 1452, 1498
StyD4I CCNGG 4 cut(s) 309, 717, 907, 1362
StyI CCWWGG 2 cut(s) 192, 901
TaiI ACGT 1 cut(s) 987
TaqI TCGA 5 cut(s) 134, 451, 871, 1013, 1080
TasI AATT 7 cut(s) 35, 245, 503, 546, 841, 923, 1085
TfiI GAWTC 5 cut(s) 299, 830, 917, 1300, 1414
Tru1I TTAA 4 cut(s) 282, 404, 929, 969
Tru9I TTAA 4 cut(s) 282, 404, 929, 969
TscAI CASTG 1 cut(s) 1316
TseFI GTSAC 1 cut(s) 692
TseI GCWGC 4 cut(s) 419, 687, 785, 1158
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 4 cut(s) 70, 242, 1178, 1361
TspRI CASTG 1 cut(s) 1316
VneI GTGCAC 1 cut(s) 632
VpaK11BI GGWCC 2 cut(s) 740, 905
XapI RAATTY 2 cut(s) 245, 546
XceI RCATGY 1 cut(s) 63
XcmI CCANNNNNNNNNTGG 1 cut(s) 245
XspI CTAG 3 cut(s) 534, 1452, 1498
Zsp2I ATGCAT 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.