MD06G1119900.v1.1
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000212
Physical Location & Seq
Forward (+)
25875718 .. 25877889
2172 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1119900.v1.1.491

Sequence Viewer

Length: 1548 bp
ATGGAAGAAATCATATCCTCATGTTCTCCACCCAATTTCTGCCAAGAAACCTCCTCCAAATTTCAACAGAGCCTACAGTTCATAATTCAGAATAGGCCTGAGTGGTGGGTGTATTCCATTTTCTGGCAAGCCTCCAAAGACAGCATTAGCGATCAAGTTTCCCTGTCGTGGGCTGCCGGCCATTTCCAGGACACTCGCGATCACTTGGCATCGAAAAGAAGCAACCGAGTGACCAACAGTTACCAACCCAAATTTGGGTTCAATAATGTGGGGAGAAAGAAGATGATTAACCGGGAAGTTGAGGCTCTTTTGCATGATGACATGGTGGATTTGGACATGAGGTTGGTGGATCAGGGAGATGTGACTGACACCGAGTGGTTTTACTTTTACACCGTTTCTTTAACCCAGTCATTCTCTGCAAGCCACGGTAATAATAGTGACAATATTCTCGGCAGGGCATTTGGTTCTGGTGGGTTTGTTTGGCTTGCAGCTGACCATGAATTTCAATTTTATGAGTGTGAGAGAGTGAAAGAAGCAAGAATGCATGGGATCCAAACTTTGGTTTGCATTGCAACTCCTTGTGGGGTACTTGAACTGGCCTCTTTGGATGTGATCAAAGAAGATTGGGGTCTAGTGCAGTTATCAAAGTCGCTGTTCGGATCAGACGGCAACATCAACAAGACGCTCTCACAGCAGACCAACCATGACGGCAATGTAATTGCTCCTATCCTAGAAAATGGACTGTTTTCAGCAGCTCAAAAGGAACTCACCCGACAAGATCGAGGTGGTATAAACGAAGCTGCACCTATCAATCTAGGACGGTCGTCACCGGAATCACCTTCTGACTCCGTTGACAATTTCACCTCCGAGAATACGGAGAGCATGACTCGGACAAAAAAGCGAGGGAGATCATCAAACCATGGATCTGCAAGTAGAGAATCACAATTGTTGAACCACGTTGAGGCAGAGAGACAGAGGAGGGAGAAGCTCAACCACCGATTCTATGTCCTCCGGTCAGTTGTTCCCAATGTGTCTAAAATGGACAGGTCCTCTTTGCTTGCCGATGCCGTGGCGTACATCAATCAACTCAAATCAAAAGTAGAGGAATTGGAGGCCAAAGTCCAAGAACAACCACAAAAACCTAAAGCGGGCAATAATGCAAGTAACAGTCTTGACCACCACTCCGGCCAAAGCACCAGCTCCAAAGTCGAACAGCGTCATTGTTCTAATAATAATGATGGTAATATTATTAATAGTAATAACAATAATAATAATAATATTAATAGTGATAGGGGAGCTGCTGCGGTTGTGGAAGTGGATGTAAAGATTCTGGGGTCAGAAGCCATAATACATGTTCAGTGTCCGGATCAAGGCTACCCATATGCTAAGTTGATGAATGCACTCAAAGGCCTAGGGCTACAAGTTTACCATGCCAGCATCTCGAGCGTGAAAGAGTTGATGATTCAGGATGTTGTGGCCAGACTGCCTTATGGGTTCACTGGTGAGGAGGCATTGAGAAATGGTATTATAAAAAGATGGTACCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

516

Amino Acids

57.6

Weight (kDa)

6.17

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 22 - 219 2.2e-41 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 318 - 364 2.1e-10 Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant PF22754 438 - 494 6.8e-07 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1529
Acc65I GGTACC 1 cut(s) 1539
AccB1I GGYRCC 1 cut(s) 1539
AccB7I CCANNNNNTGG 2 cut(s) 123, 559
AccII CGCG 1 cut(s) 198
AccIII TCCGGA 1 cut(s) 1363
AciI CCGC 2 cut(s) 1148, 1304
AclWI GGATC 6 cut(s) 357, 544, 557, 667, 931, 1374
AcoI YGGCCR 3 cut(s) 178, 1186, 1476
AcsI RAATTY 3 cut(s) 59, 251, 500
AdeI CACNNNGTG 1 cut(s) 375
AfaI GTAC 3 cut(s) 588, 1076, 1541
AflIII ACRYGT 1 cut(s) 1351
AgsI TTSAA 5 cut(s) 65, 262, 506, 593, 952
AjnI CCWGG 1 cut(s) 186
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
AluBI AGCT 6 cut(s) 491, 755, 800, 988, 1200, 1298
AluI AGCT 6 cut(s) 491, 755, 800, 988, 1200, 1298
Alw26I GTCTC 1 cut(s) 964
AlwI GGATC 6 cut(s) 357, 544, 557, 667, 931, 1374
Ama87I CYCGRG 1 cut(s) 1441
Aor13HI TCCGGA 1 cut(s) 1363
AoxI GGCC 7 cut(s) 95, 178, 597, 1113, 1186, 1408, 1476
ApeKI GCWGC 6 cut(s) 173, 488, 752, 800, 1298, 1301
ApoI RAATTY 3 cut(s) 59, 251, 500
AseI ATTAAT 2 cut(s) 1251, 1281
Asp718I GGTACC 1 cut(s) 1539
AspA2I CCTAGG 1 cut(s) 1411
AspS9I GGNCC 1 cut(s) 1047
AsuC2I CCSGG 1 cut(s) 293
AsuHPI GGTGA 5 cut(s) 760, 819, 828, 853, 1514
AvaI CYCGRG 1 cut(s) 1441
AvaII GGWCC 1 cut(s) 1047
AvrII CCTAGG 1 cut(s) 1411
BalI TGGCCA 1 cut(s) 1478
BamHI GGATCC 1 cut(s) 549
BanI GGYRCC 1 cut(s) 1539
BarI GAAGNNNNNNTAC 2 cut(s) 1332, 1364
BbvI GCAGC 6 cut(s) 160, 500, 764, 787, 1285, 1288
BccI CCATC 2 cut(s) 1232, 1530
BceAI ACGGC 3 cut(s) 682, 724, 1052
BciT130I CCWGG 1 cut(s) 188
BclI TGATCA 1 cut(s) 612
BcnI CCSGG 1 cut(s) 293
BcoDI GTCTC 1 cut(s) 964
BfaI CTAG 4 cut(s) 632, 731, 815, 1412
BfmI CTRYAG 1 cut(s) 74
BisI GCNGC 6 cut(s) 174, 489, 753, 801, 1299, 1302
BlnI CCTAGG 1 cut(s) 1411
BlsI GCNGC 6 cut(s) 175, 490, 754, 802, 1300, 1303
Bme1390I CCNGG 2 cut(s) 188, 293
Bme18I GGWCC 1 cut(s) 1047
BmeT110I CYCGRG 1 cut(s) 1441
BmgT120I GGNCC 1 cut(s) 1047
BmiI GGNNCC 2 cut(s) 551, 1541
BmrFI CCNGG 2 cut(s) 188, 293
BmrI ACTGGG 1 cut(s) 400
BmsI GCATC 3 cut(s) 218, 1054, 1446
BmuI ACTGGG 1 cut(s) 400
BoxI GACNNNNGTC 1 cut(s) 823
BplI GAGNNNNNCTC 2 cut(s) 871, 903
BpuMI CCSGG 1 cut(s) 293
BsaJI CCNNGG 4 cut(s) 424, 919, 1068, 1411
BsaWI WCCGGW 3 cut(s) 829, 1011, 1363
BsaXI ACNNNNNCTCC 2 cut(s) 1166, 1196
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 3 cut(s) 406, 600, 1504
Bse3DI GCAATG 2 cut(s) 567, 718
BseAI TCCGGA 1 cut(s) 1363
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 4 cut(s) 424, 919, 1068, 1411
BseGI GGATG 3 cut(s) 613, 1324, 1474
BseMI GCAATG 2 cut(s) 567, 718
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 3 cut(s) 406, 600, 1504
BseRI GAGGAG 3 cut(s) 43, 991, 1520
BseXI GCAGC 6 cut(s) 160, 500, 764, 787, 1285, 1288
BsgI GTGCAG 2 cut(s) 656, 786
Bsh1236I CGCG 1 cut(s) 198
Bsh1285I CGRYCG 1 cut(s) 824
BshFI GGCC 7 cut(s) 97, 180, 599, 1115, 1188, 1410, 1478
BshNI GGYRCC 1 cut(s) 1539
BsiEI CGRYCG 1 cut(s) 824
BsiHKCI CYCGRG 1 cut(s) 1441
BsiSI CCGG 6 cut(s) 177, 292, 830, 1012, 1185, 1364
BsmAI GTCTC 1 cut(s) 964
BsmI GAATGC 2 cut(s) 546, 1402
BsnI GGCC 7 cut(s) 97, 180, 599, 1115, 1188, 1410, 1478
BsoBI CYCGRG 1 cut(s) 1441
Bsp13I TCCGGA 1 cut(s) 1363
Bsp19I CCATGG 1 cut(s) 919
Bsp68I TCGCGA 1 cut(s) 198
BspACI CCGC 2 cut(s) 1148, 1304
BspANI GGCC 7 cut(s) 97, 180, 599, 1115, 1188, 1410, 1478
BspCNI CTCAG 1 cut(s) 91
BspEI TCCGGA 1 cut(s) 1363
BspFNI CGCG 1 cut(s) 198
BspLI GGNNCC 2 cut(s) 551, 1541
BspPI GGATC 6 cut(s) 357, 544, 557, 667, 931, 1374
BspT107I GGYRCC 1 cut(s) 1539
BsrDI GCAATG 2 cut(s) 567, 718
BsrFI RCCGGY 1 cut(s) 176
BsrI ACTGG 3 cut(s) 406, 600, 1504
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 4 cut(s) 424, 919, 1068, 1411
BssT1I CCWWGG 2 cut(s) 919, 1411
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 7 cut(s) 78, 239, 394, 428, 744, 822, 1169
BstC8I GCNNGC 7 cut(s) 129, 178, 421, 486, 1059, 1150, 1435
BstDEI CTNAG 2 cut(s) 99, 1386
BstDSI CCRYGG 3 cut(s) 424, 919, 1068
BstF5I GGATG 3 cut(s) 613, 1324, 1474
BstFNI CGCG 1 cut(s) 198
BstMAI GTCTC 1 cut(s) 964
BstMCI CGRYCG 1 cut(s) 824
BstMWI GCNNNNNNNGC 2 cut(s) 691, 1443
BstNI CCWGG 1 cut(s) 188
BstNSI RCATGY 1 cut(s) 1355
BstPAI GACNNNNGTC 1 cut(s) 823
BstSCI CCNGG 2 cut(s) 186, 291
BstSFI CTRYAG 1 cut(s) 74
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 6 cut(s) 160, 500, 764, 787, 1285, 1288
BstX2I RGATCY 2 cut(s) 549, 923
BstYI RGATCY 2 cut(s) 549, 923
BsuRI GGCC 7 cut(s) 97, 180, 599, 1115, 1188, 1410, 1478
BtgI CCRYGG 3 cut(s) 424, 919, 1068
BtsCI GGATG 3 cut(s) 613, 1324, 1474
BtsIMutI CAGTG 2 cut(s) 1364, 1497
BtuMI TCGCGA 1 cut(s) 198
Cac8I GCNNGC 7 cut(s) 129, 178, 421, 486, 1059, 1150, 1435
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 1047
CseI GACGC 2 cut(s) 691, 1205
Csp6I GTAC 3 cut(s) 587, 1075, 1540
CviQI GTAC 3 cut(s) 587, 1075, 1540
DdeI CTNAG 2 cut(s) 99, 1386
DraIII CACNNNGTG 1 cut(s) 375
EaeI YGGCCR 3 cut(s) 178, 1186, 1476
Eco130I CCWWGG 2 cut(s) 919, 1411
Eco147I AGGCCT 2 cut(s) 97, 1410
Eco47I GGWCC 1 cut(s) 1047
Eco88I CYCGRG 1 cut(s) 1441
EcoO109I RGGNCCY 1 cut(s) 1047
EcoRII CCWGG 1 cut(s) 186
EcoT14I CCWWGG 2 cut(s) 919, 1411
EcoT22I ATGCAT 1 cut(s) 546
ErhI CCWWGG 2 cut(s) 919, 1411
FauI CCCGC 1 cut(s) 1141
FauNDI CATATG 1 cut(s) 1381
FbaI TGATCA 1 cut(s) 612
Fnu4HI GCNGC 6 cut(s) 174, 489, 753, 801, 1299, 1302
FokI GGATG 3 cut(s) 620, 1331, 1481
Fsp4HI GCNGC 6 cut(s) 174, 489, 753, 801, 1299, 1302
FspBI CTAG 4 cut(s) 632, 731, 815, 1412
GluI GCNGC 6 cut(s) 174, 489, 753, 801, 1299, 1302
HaeIII GGCC 7 cut(s) 97, 180, 599, 1115, 1188, 1410, 1478
HapII CCGG 6 cut(s) 177, 292, 830, 1012, 1185, 1364
HgaI GACGC 2 cut(s) 691, 1205
HincII GTYRAC 1 cut(s) 853
HindII GTYRAC 1 cut(s) 853
HinfI GANTC 7 cut(s) 833, 845, 886, 938, 999, 1327, 1462
HpaII CCGG 6 cut(s) 177, 292, 830, 1012, 1185, 1364
HphI GGTGA 5 cut(s) 760, 819, 828, 853, 1514
Hpy166II GTNNAC 3 cut(s) 853, 1426, 1497
Hpy188I TCNGA 7 cut(s) 90, 659, 664, 844, 868, 891, 1339
Hpy188III TCNNGA 5 cut(s) 197, 1172, 1364, 1441, 1466
Hpy8I GTNNAC 3 cut(s) 853, 1426, 1497
HpyAV CCTTC 1 cut(s) 849
HpyCH4III ACNGT 7 cut(s) 78, 239, 394, 428, 744, 822, 1169
HpyCH4IV ACGT 1 cut(s) 957
HpyF10VI GCNNNNNNNGC 2 cut(s) 691, 1443
HpyF3I CTNAG 2 cut(s) 99, 1386
HpySE526I ACGT 1 cut(s) 957
Kpn2I TCCGGA 1 cut(s) 1363
KpnI GGTACC 1 cut(s) 1543
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
Ksp22I TGATCA 1 cut(s) 612
LmnI GCTCC 3 cut(s) 727, 1205, 1295
Lsp1109I GCAGC 6 cut(s) 160, 500, 764, 787, 1285, 1288
LweI GCATC 3 cut(s) 218, 1054, 1446
MaeI CTAG 4 cut(s) 632, 731, 815, 1412
MaeII ACGT 1 cut(s) 957
MaeIII GTNAC 6 cut(s) 229, 239, 361, 437, 825, 1163
MboII GAAGA 3 cut(s) 17, 292, 632
MfeI CAATTG 1 cut(s) 944
MflI RGATCY 2 cut(s) 549, 923
MlsI TGGCCA 1 cut(s) 1478
MluNI TGGCCA 1 cut(s) 1478
MlyI GAGTC 2 cut(s) 839, 880
Mox20I TGGCCA 1 cut(s) 1478
Mph1103I ATGCAT 1 cut(s) 546
MroI TCCGGA 1 cut(s) 1363
MroNI GCCGGC 1 cut(s) 176
MscI TGGCCA 1 cut(s) 1478
MseI TTAA 4 cut(s) 288, 401, 1251, 1281
Msp20I TGGCCA 1 cut(s) 1478
MspA1I CMGCKG 1 cut(s) 491
MspI CCGG 6 cut(s) 177, 292, 830, 1012, 1185, 1364
MspR9I CCNGG 2 cut(s) 188, 293
MunI CAATTG 1 cut(s) 944
Mva1269I GAATGC 2 cut(s) 546, 1402
MvaI CCWGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 2 cut(s) 691, 1443
NaeI GCCGGC 1 cut(s) 178
NciI CCSGG 1 cut(s) 293
NcoI CCATGG 1 cut(s) 919
NdeI CATATG 1 cut(s) 1381
NgoMIV GCCGGC 1 cut(s) 176
NlaIV GGNNCC 2 cut(s) 551, 1541
NmeAIII GCCGAG 1 cut(s) 429
NmuCI GTSAC 4 cut(s) 229, 361, 437, 825
NruI TCGCGA 1 cut(s) 198
NsiI ATGCAT 1 cut(s) 546
NspI RCATGY 1 cut(s) 1355
PaeR7I CTCGAG 1 cut(s) 1441
PceI AGGCCT 2 cut(s) 97, 1410
PciI ACATGT 1 cut(s) 1351
PctI GAATGC 2 cut(s) 546, 1402
PdiI GCCGGC 1 cut(s) 178
PfeI GAWTC 5 cut(s) 833, 938, 999, 1327, 1462
PflMI CCANNNNNTGG 2 cut(s) 123, 559
PfoI TCCNGGA 1 cut(s) 186
PkrI GCNGC 6 cut(s) 175, 490, 754, 802, 1300, 1303
PleI GAGTC 2 cut(s) 839, 880
PpsI GAGTC 2 cut(s) 839, 880
PpuMI RGGWCCY 1 cut(s) 1047
PscI ACATGT 1 cut(s) 1351
PshAI GACNNNNGTC 1 cut(s) 823
PshBI ATTAAT 2 cut(s) 1251, 1281
PsiI TTATAA 1 cut(s) 1529
Psp5II RGGWCCY 1 cut(s) 1047
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 2 cut(s) 551, 1541
PspPI GGNCC 1 cut(s) 1047
PspPPI RGGWCCY 1 cut(s) 1047
PsuI RGATCY 2 cut(s) 549, 923
PvuII CAGCTG 1 cut(s) 491
RruI TCGCGA 1 cut(s) 198
RsaI GTAC 3 cut(s) 588, 1076, 1541
RsaNI GTAC 3 cut(s) 587, 1075, 1540
SaqAI TTAA 4 cut(s) 288, 401, 1251, 1281
SatI GCNGC 6 cut(s) 174, 489, 753, 801, 1299, 1302
Sau96I GGNCC 1 cut(s) 1047
SchI GAGTC 2 cut(s) 839, 880
ScrFI CCNGG 2 cut(s) 188, 293
SfaNI GCATC 3 cut(s) 218, 1054, 1446
SfcI CTRYAG 1 cut(s) 74
Sfr274I CTCGAG 1 cut(s) 1441
SinI GGWCC 1 cut(s) 1047
SlaI CTCGAG 1 cut(s) 1441
SmlI CTYRAG 1 cut(s) 1441
SmoI CTYRAG 1 cut(s) 1441
SseBI AGGCCT 2 cut(s) 97, 1410
SsiI CCGC 2 cut(s) 1148, 1304
SspI AATATT 3 cut(s) 445, 1246, 1279
SspMI CTAG 4 cut(s) 632, 731, 815, 1412
StuI AGGCCT 2 cut(s) 97, 1410
StyD4I CCNGG 2 cut(s) 186, 291
StyI CCWWGG 2 cut(s) 919, 1411
TaaI ACNGT 7 cut(s) 78, 239, 394, 428, 744, 822, 1169
TaiI ACGT 1 cut(s) 960
TaqI TCGA 4 cut(s) 212, 781, 1209, 1442
TfiI GAWTC 5 cut(s) 833, 938, 999, 1327, 1462
Tru1I TTAA 4 cut(s) 288, 401, 1251, 1281
Tru9I TTAA 4 cut(s) 288, 401, 1251, 1281
TscAI CASTG 2 cut(s) 1364, 1504
TseFI GTSAC 4 cut(s) 229, 361, 437, 825
TseI GCWGC 6 cut(s) 173, 488, 752, 800, 1298, 1301
Tsp45I GTSAC 4 cut(s) 229, 361, 437, 825
TspDTI ATGAA 3 cut(s) 70, 513, 1409
TspGWI ACGGA 2 cut(s) 838, 890
TspRI CASTG 2 cut(s) 1364, 1504
Van91I CCANNNNNTGG 2 cut(s) 123, 559
VpaK11BI GGWCC 1 cut(s) 1047
VspI ATTAAT 2 cut(s) 1251, 1281
XapI RAATTY 3 cut(s) 59, 251, 500
XceI RCATGY 1 cut(s) 1355
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XhoI CTCGAG 1 cut(s) 1441
XmaJI CCTAGG 1 cut(s) 1411
XspI CTAG 4 cut(s) 632, 731, 815, 1412
Zsp2I ATGCAT 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.