transcription factor
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| bHLH-MYC_N | PF14215 | 25 - 142 | 3.8e-16 | bHLH-MYC and R2R3-MYB transcription factors N-terminal |
| HLH | PF00010 | 184 - 230 | 1.4e-11 | Helix-loop-helix DNA-binding domain |
| bHLH-TF_ACT-like_plant | PF22754 | 275 - 347 | 1.3e-09 | Plant bHLH transcription factor, ACT-like domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1043 |
| AccI | GTMKAC | 2 cut(s) | 123, 672 |
| AciI | CCGC | 2 cut(s) | 162, 810 |
| AclWI | GGATC | 3 cut(s) | 267, 463, 606 |
| AcoI | YGGCCR | 2 cut(s) | 107, 187 |
| AcsI | RAATTY | 4 cut(s) | 113, 248, 717, 936 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 559 |
| AflII | CTTAAG | 1 cut(s) | 686 |
| AgsI | TTSAA | 5 cut(s) | 77, 101, 722, 929, 980 |
| AjnI | CCWGG | 1 cut(s) | 309 |
| AluBI | AGCT | 5 cut(s) | 244, 302, 586, 647, 792 |
| AluI | AGCT | 5 cut(s) | 244, 302, 586, 647, 792 |
| Alw21I | GWGCWC | 1 cut(s) | 794 |
| Alw26I | GTCTC | 3 cut(s) | 201, 325, 562 |
| AlwI | GGATC | 3 cut(s) | 267, 463, 606 |
| AoxI | GGCC | 7 cut(s) | 107, 180, 187, 269, 415, 473, 561 |
| ApeKI | GCWGC | 3 cut(s) | 410, 812, 815 |
| ApoI | RAATTY | 4 cut(s) | 113, 248, 717, 936 |
| AseI | ATTAAT | 2 cut(s) | 12, 345 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 968 |
| AspS9I | GGNCC | 2 cut(s) | 180, 473 |
| AsuC2I | CCSGG | 1 cut(s) | 472 |
| AsuHPI | GGTGA | 3 cut(s) | 292, 534, 584 |
| BalI | TGGCCA | 1 cut(s) | 189 |
| BanII | GRGCYC | 1 cut(s) | 794 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 57, 89 |
| BauI | CACGAG | 1 cut(s) | 787 |
| BbsI | GAAGAC | 1 cut(s) | 321 |
| Bbv12I | GWGCWC | 1 cut(s) | 794 |
| BbvI | GCAGC | 3 cut(s) | 397, 799, 802 |
| BccI | CCATC | 2 cut(s) | 631, 998 |
| BceAI | ACGGC | 1 cut(s) | 175 |
| BciT130I | CCWGG | 1 cut(s) | 311 |
| BclI | TGATCA | 1 cut(s) | 282 |
| BcnI | CCSGG | 1 cut(s) | 472 |
| BcoDI | GTCTC | 3 cut(s) | 201, 325, 562 |
| BfaI | CTAG | 2 cut(s) | 900, 1060 |
| BfmI | CTRYAG | 4 cut(s) | 40, 411, 775, 819 |
| BfrI | CTTAAG | 1 cut(s) | 686 |
| BisI | GCNGC | 4 cut(s) | 411, 810, 813, 816 |
| BlsI | GCNGC | 4 cut(s) | 412, 811, 814, 817 |
| Bme1390I | CCNGG | 2 cut(s) | 311, 472 |
| BmgT120I | GGNCC | 2 cut(s) | 180, 473 |
| BmiI | GGNNCC | 1 cut(s) | 847 |
| BmrFI | CCNGG | 2 cut(s) | 311, 472 |
| BmsI | GCATC | 2 cut(s) | 210, 652 |
| BpiI | GAAGAC | 1 cut(s) | 321 |
| BpmI | CTGGAG | 2 cut(s) | 71, 284 |
| BpuMI | CCSGG | 1 cut(s) | 472 |
| BsaBI | GATNNNNATC | 1 cut(s) | 460 |
| BsaJI | CCNNGG | 2 cut(s) | 418, 781 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 69, 99 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 559 |
| Bse118I | RCCGGY | 1 cut(s) | 182 |
| Bse1I | ACTGG | 2 cut(s) | 88, 339 |
| Bse8I | GATNNNNATC | 1 cut(s) | 460 |
| BseBI | CCWGG | 1 cut(s) | 311 |
| BseDI | CCNNGG | 2 cut(s) | 418, 781 |
| BseGI | GGATG | 1 cut(s) | 215 |
| BseJI | GATNNNNATC | 1 cut(s) | 460 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 559 |
| BseNI | ACTGG | 2 cut(s) | 88, 339 |
| BseRI | GAGGAG | 2 cut(s) | 716, 1034 |
| BseX3I | CGGCCG | 1 cut(s) | 107 |
| BseXI | GCAGC | 3 cut(s) | 397, 799, 802 |
| Bsh1285I | CGRYCG | 1 cut(s) | 110 |
| BshFI | GGCC | 7 cut(s) | 109, 182, 189, 271, 417, 475, 563 |
| BsiEI | CGRYCG | 1 cut(s) | 110 |
| BsiHKAI | GWGCWC | 1 cut(s) | 794 |
| BsiSI | CCGG | 3 cut(s) | 110, 183, 471 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 559 |
| BsmAI | GTCTC | 3 cut(s) | 201, 325, 562 |
| BsmI | GAATGC | 1 cut(s) | 916 |
| BsnI | GGCC | 7 cut(s) | 109, 182, 189, 271, 417, 475, 563 |
| Bsp1286I | GDGCHC | 1 cut(s) | 794 |
| Bsp143I | GATC | 6 cut(s) | 151, 259, 282, 455, 518, 611 |
| Bsp19I | CCATGG | 1 cut(s) | 418 |
| BspACI | CCGC | 2 cut(s) | 162, 810 |
| BspANI | GGCC | 7 cut(s) | 109, 182, 189, 271, 417, 475, 563 |
| BspHI | TCATGA | 1 cut(s) | 753 |
| BspLI | GGNNCC | 1 cut(s) | 847 |
| BspMAI | CTGCAG | 1 cut(s) | 415 |
| BspPI | GGATC | 3 cut(s) | 267, 463, 606 |
| BspTI | CTTAAG | 1 cut(s) | 686 |
| BsrFI | RCCGGY | 1 cut(s) | 182 |
| BsrI | ACTGG | 2 cut(s) | 88, 339 |
| BssAI | RCCGGY | 1 cut(s) | 182 |
| BssECI | CCNNGG | 2 cut(s) | 418, 781 |
| BssMI | GATC | 6 cut(s) | 151, 259, 282, 455, 518, 611 |
| BssNAI | GTATAC | 1 cut(s) | 673 |
| BssSI | CACGAG | 1 cut(s) | 787 |
| BssT1I | CCWWGG | 2 cut(s) | 418, 781 |
| Bst1107I | GTATAC | 1 cut(s) | 673 |
| Bst2BI | CACGAG | 1 cut(s) | 787 |
| Bst2UI | CCWGG | 1 cut(s) | 311 |
| Bst4CI | ACNGT | 1 cut(s) | 402 |
| BstAFI | CTTAAG | 1 cut(s) | 686 |
| BstC8I | GCNNGC | 4 cut(s) | 141, 415, 533, 949 |
| BstDEI | CTNAG | 1 cut(s) | 449 |
| BstDSI | CCRYGG | 1 cut(s) | 418 |
| BstF5I | GGATG | 1 cut(s) | 215 |
| BstKTI | GATC | 6 cut(s) | 154, 262, 285, 458, 521, 614 |
| BstMAI | GTCTC | 3 cut(s) | 201, 325, 562 |
| BstMBI | GATC | 6 cut(s) | 151, 259, 282, 455, 518, 611 |
| BstMCI | CGRYCG | 1 cut(s) | 110 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 815 |
| BstNI | CCWGG | 1 cut(s) | 311 |
| BstSCI | CCNGG | 2 cut(s) | 309, 470 |
| BstSFI | CTRYAG | 4 cut(s) | 40, 411, 775, 819 |
| BstV1I | GCAGC | 3 cut(s) | 397, 799, 802 |
| BstV2I | GAAGAC | 1 cut(s) | 321 |
| BstX2I | RGATCY | 1 cut(s) | 259 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 226, 425 |
| BstYI | RGATCY | 1 cut(s) | 259 |
| BstZ17I | GTATAC | 1 cut(s) | 673 |
| BstZI | CGGCCG | 1 cut(s) | 107 |
| BsuRI | GGCC | 7 cut(s) | 109, 182, 189, 271, 417, 475, 563 |
| BtgI | CCRYGG | 1 cut(s) | 418 |
| BtsCI | GGATG | 1 cut(s) | 215 |
| Cac8I | GCNNGC | 4 cut(s) | 141, 415, 533, 949 |
| CciI | TCATGA | 1 cut(s) | 753 |
| Cfr10I | RCCGGY | 1 cut(s) | 182 |
| Cfr13I | GGNCC | 2 cut(s) | 180, 473 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 433, 468 |
| CviAII | CATG | 9 cut(s) | 177, 319, 325, 419, 554, 754, 856, 944, 973 |
| DdeI | CTNAG | 1 cut(s) | 449 |
| DpnI | GATC | 6 cut(s) | 153, 261, 284, 457, 520, 613 |
| DpnII | GATC | 6 cut(s) | 151, 259, 282, 455, 518, 611 |
| EaeI | YGGCCR | 2 cut(s) | 107, 187 |
| EagI | CGGCCG | 1 cut(s) | 107 |
| Ecl136II | GAGCTC | 1 cut(s) | 792 |
| EclXI | CGGCCG | 1 cut(s) | 107 |
| Eco130I | CCWWGG | 2 cut(s) | 418, 781 |
| Eco24I | GRGCYC | 1 cut(s) | 794 |
| Eco52I | CGGCCG | 1 cut(s) | 107 |
| Eco53kI | GAGCTC | 1 cut(s) | 792 |
| EcoICRI | GAGCTC | 1 cut(s) | 792 |
| EcoRII | CCWGG | 1 cut(s) | 309 |
| EcoT14I | CCWWGG | 2 cut(s) | 418, 781 |
| EcoT38I | GRGCYC | 1 cut(s) | 794 |
| ErhI | CCWWGG | 2 cut(s) | 418, 781 |
| FaeI | CATG | 9 cut(s) | 180, 322, 328, 422, 557, 757, 859, 947, 976 |
| FatI | CATG | 9 cut(s) | 176, 318, 324, 418, 553, 753, 855, 943, 972 |
| FbaI | TGATCA | 1 cut(s) | 282 |
| FblI | GTMKAC | 2 cut(s) | 123, 672 |
| Fnu4HI | GCNGC | 4 cut(s) | 411, 810, 813, 816 |
| FokI | GGATG | 1 cut(s) | 202 |
| FriOI | GRGCYC | 1 cut(s) | 794 |
| Fsp4HI | GCNGC | 4 cut(s) | 411, 810, 813, 816 |
| FspBI | CTAG | 2 cut(s) | 900, 1060 |
| GluI | GCNGC | 4 cut(s) | 411, 810, 813, 816 |
| GsuI | CTGGAG | 2 cut(s) | 71, 284 |
| HaeIII | GGCC | 7 cut(s) | 109, 182, 189, 271, 417, 475, 563 |
| HapII | CCGG | 3 cut(s) | 110, 183, 471 |
| Hin1II | CATG | 9 cut(s) | 180, 322, 328, 422, 557, 757, 859, 947, 976 |
| HincII | GTYRAC | 1 cut(s) | 445 |
| HindII | GTYRAC | 1 cut(s) | 445 |
| HindIII | AAGCTT | 2 cut(s) | 584, 645 |
| HinfI | GANTC | 7 cut(s) | 362, 467, 539, 597, 859, 864, 1008 |
| HpaII | CCGG | 3 cut(s) | 110, 183, 471 |
| HphI | GGTGA | 3 cut(s) | 292, 534, 584 |
| Hpy166II | GTNNAC | 6 cut(s) | 67, 124, 340, 445, 673, 964 |
| Hpy188III | TCNNGA | 7 cut(s) | 53, 263, 754, 770, 875, 980, 1001 |
| Hpy8I | GTNNAC | 6 cut(s) | 67, 124, 340, 445, 673, 964 |
| Hpy99I | CGWCG | 2 cut(s) | 579, 620 |
| HpyAV | CCTTC | 2 cut(s) | 271, 486 |
| HpyCH4III | ACNGT | 1 cut(s) | 402 |
| HpyCH4V | TGCA | 4 cut(s) | 413, 665, 914, 947 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 815 |
| HpyF3I | CTNAG | 1 cut(s) | 449 |
| Hsp92II | CATG | 9 cut(s) | 180, 322, 328, 422, 557, 757, 859, 947, 976 |
| Ksp22I | TGATCA | 1 cut(s) | 282 |
| Kzo9I | GATC | 6 cut(s) | 151, 259, 282, 455, 518, 611 |
| LmnI | GCTCC | 2 cut(s) | 797, 851 |
| Lsp1109I | GCAGC | 3 cut(s) | 397, 799, 802 |
| LweI | GCATC | 2 cut(s) | 210, 652 |
| MaeI | CTAG | 2 cut(s) | 900, 1060 |
| MaeIII | GTNAC | 2 cut(s) | 355, 758 |
| MalI | GATC | 6 cut(s) | 153, 261, 284, 457, 520, 613 |
| MboI | GATC | 6 cut(s) | 151, 259, 282, 455, 518, 611 |
| MboII | GAAGA | 6 cut(s) | 17, 286, 326, 528, 646, 847 |
| MflI | RGATCY | 1 cut(s) | 259 |
| MhlI | GDGCHC | 1 cut(s) | 794 |
| MlsI | TGGCCA | 1 cut(s) | 189 |
| MluCI | AATT | 6 cut(s) | 113, 235, 248, 717, 929, 936 |
| MluNI | TGGCCA | 1 cut(s) | 189 |
| MlyI | GAGTC | 2 cut(s) | 461, 873 |
| MmeI | TCCRAC | 3 cut(s) | 207, 237, 687 |
| Mox20I | TGGCCA | 1 cut(s) | 189 |
| MroXI | GAANNNNTTC | 1 cut(s) | 968 |
| MscI | TGGCCA | 1 cut(s) | 189 |
| MseI | TTAA | 5 cut(s) | 12, 345, 588, 687, 797 |
| MslI | CAYNNNNRTG | 2 cut(s) | 323, 423 |
| Msp20I | TGGCCA | 1 cut(s) | 189 |
| MspA1I | CMGCKG | 1 cut(s) | 812 |
| MspCI | CTTAAG | 1 cut(s) | 686 |
| MspI | CCGG | 3 cut(s) | 110, 183, 471 |
| MspR9I | CCNGG | 2 cut(s) | 311, 472 |
| Mva1269I | GAATGC | 1 cut(s) | 916 |
| MvaI | CCWGG | 1 cut(s) | 311 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 815 |
| NciI | CCSGG | 1 cut(s) | 472 |
| NcoI | CCATGG | 1 cut(s) | 418 |
| NdeII | GATC | 6 cut(s) | 151, 259, 282, 455, 518, 611 |
| NlaIII | CATG | 9 cut(s) | 180, 322, 328, 422, 557, 757, 859, 947, 976 |
| NlaIV | GGNNCC | 1 cut(s) | 847 |
| NmeAIII | GCCGAG | 1 cut(s) | 589 |
| NmuCI | GTSAC | 2 cut(s) | 355, 758 |
| PagI | TCATGA | 1 cut(s) | 753 |
| PctI | GAATGC | 1 cut(s) | 916 |
| PdmI | GAANNNNTTC | 1 cut(s) | 968 |
| PfeI | GAWTC | 5 cut(s) | 362, 539, 597, 859, 1008 |
| PflFI | GACNNNGTC | 1 cut(s) | 400 |
| PfoI | TCCNGGA | 1 cut(s) | 309 |
| PkrI | GCNGC | 4 cut(s) | 412, 811, 814, 817 |
| PleI | GAGTC | 2 cut(s) | 461, 872 |
| PpsI | GAGTC | 2 cut(s) | 461, 872 |
| PshBI | ATTAAT | 2 cut(s) | 12, 345 |
| PsiI | TTATAA | 1 cut(s) | 1043 |
| Psp124BI | GAGCTC | 1 cut(s) | 794 |
| Psp6I | CCWGG | 1 cut(s) | 309 |
| PspGI | CCWGG | 1 cut(s) | 309 |
| PspN4I | GGNNCC | 1 cut(s) | 847 |
| PspPI | GGNCC | 2 cut(s) | 180, 473 |
| PstI | CTGCAG | 1 cut(s) | 415 |
| PsuI | RGATCY | 1 cut(s) | 259 |
| PsyI | GACNNNGTC | 1 cut(s) | 400 |
| RseI | CAYNNNNRTG | 2 cut(s) | 323, 423 |
| SacI | GAGCTC | 1 cut(s) | 794 |
| SaqAI | TTAA | 5 cut(s) | 12, 345, 588, 687, 797 |
| SatI | GCNGC | 4 cut(s) | 411, 810, 813, 816 |
| Sau3AI | GATC | 6 cut(s) | 151, 259, 282, 455, 518, 611 |
| Sau96I | GGNCC | 2 cut(s) | 180, 473 |
| SchI | GAGTC | 2 cut(s) | 461, 873 |
| ScrFI | CCNGG | 2 cut(s) | 311, 472 |
| SduI | GDGCHC | 1 cut(s) | 794 |
| SfaNI | GCATC | 2 cut(s) | 210, 652 |
| SfcI | CTRYAG | 4 cut(s) | 40, 411, 775, 819 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 323, 423 |
| SmlI | CTYRAG | 1 cut(s) | 686 |
| SmoI | CTYRAG | 1 cut(s) | 686 |
| Sse9I | AATT | 6 cut(s) | 113, 235, 248, 717, 929, 936 |
| SsiI | CCGC | 2 cut(s) | 162, 810 |
| SspI | AATATT | 1 cut(s) | 16 |
| SspMI | CTAG | 2 cut(s) | 900, 1060 |
| SstI | GAGCTC | 1 cut(s) | 794 |
| StyD4I | CCNGG | 2 cut(s) | 309, 470 |
| StyI | CCWWGG | 2 cut(s) | 418, 781 |
| TaaI | ACNGT | 1 cut(s) | 402 |
| TaqI | TCGA | 5 cut(s) | 146, 297, 499, 632, 862 |
| TasI | AATT | 6 cut(s) | 113, 235, 248, 717, 929, 936 |
| TauI | GCSGC | 1 cut(s) | 812 |
| TfiI | GAWTC | 5 cut(s) | 362, 539, 597, 859, 1008 |
| Tru1I | TTAA | 5 cut(s) | 12, 345, 588, 687, 797 |
| Tru9I | TTAA | 5 cut(s) | 12, 345, 588, 687, 797 |
| TseFI | GTSAC | 2 cut(s) | 355, 758 |
| TseI | GCWGC | 3 cut(s) | 410, 812, 815 |
| Tsp45I | GTSAC | 2 cut(s) | 355, 758 |
| TspDTI | ATGAA | 3 cut(s) | 923, 929, 961 |
| TspGWI | ACGGA | 2 cut(s) | 12, 604 |
| Tth111I | GACNNNGTC | 1 cut(s) | 400 |
| Vha464I | CTTAAG | 1 cut(s) | 686 |
| VspI | ATTAAT | 2 cut(s) | 12, 345 |
| XapI | RAATTY | 4 cut(s) | 113, 248, 717, 936 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 248 |
| XmiI | GTMKAC | 2 cut(s) | 123, 672 |
| XmnI | GAANNNNTTC | 1 cut(s) | 968 |
| XspI | CTAG | 2 cut(s) | 900, 1060 |