Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004842.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Forward (+)

9126 .. 10101

Gene Structure 976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004842.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgcgattccgcatattctattggtggcaattgaattcagctcccatgatggcattgactacggccttctgctctgggacctcaatctggctgagaggggcccacgagtttcagttcaacaactgcgagagagccaaagaggcccaaatccacgaaattgagaccttgatctacatcccaacttccgacagtgatcttgaaatgggtcggatcagctcgacccggaaacaagaccgctcgagttcatcaatcggaacttctccatttttgacatcggcatcattgccggcgtgcaggaagaaggatcacagctcgtacaatgacgacaagaaacatgtttttggttctagtaagaagaagaacggagttcagaacccaaacccagacttcgcagattccgactgccagatgaaaagagcaccgaagaaatggtgcgggaaatccgggctgggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

151

Amino Acids

17.06

Weight (kDa)

9.3

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	237
AciI	CCGC	3 cut(s)	10, 235, 435
AclWI	GGATC	2 cut(s)	218, 312
AcsI	RAATTY	1 cut(s)	34
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	87
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	3 cut(s)	34, 118, 200
AluBI	AGCT	3 cut(s)	41, 216, 312
AluI	AGCT	3 cut(s)	41, 216, 312
Alw21I	GWGCWC	1 cut(s)	421
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	2 cut(s)	218, 312
Ama87I	CYCGRG	1 cut(s)	238
AoxI	GGCC	3 cut(s)	63, 99, 141
ApaI	GGGCCC	1 cut(s)	103
ApoI	RAATTY	1 cut(s)	34
AspS9I	GGNCC	4 cut(s)	78, 99, 100, 142
AsuC2I	CCSGG	2 cut(s)	223, 445
AvaI	CYCGRG	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	103
BauI	CACGAG	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	421
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	1 cut(s)	78
BcnI	CCSGG	2 cut(s)	223, 445
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	348
BglI	GCCNNNNNGGC	1 cut(s)	140
Bme1390I	CCNGG	2 cut(s)	223, 445
Bme18I	GGWCC	1 cut(s)	78
BmeT110I	CYCGRG	1 cut(s)	238
BmgT120I	GGNCC	4 cut(s)	78, 99, 100, 142
BmiI	GGNNCC	3 cut(s)	79, 100, 101
BmrFI	CCNGG	2 cut(s)	223, 445
BmsI	GCATC	1 cut(s)	287
BpuMI	CCSGG	2 cut(s)	223, 445
BsaBI	GATNNNNATC	1 cut(s)	173
BsaI	GGTCTC	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse118I	RCCGGY	1 cut(s)	286
Bse3DI	GCAATG	1 cut(s)	281
Bse8I	GATNNNNATC	1 cut(s)	173
BseGI	GGATG	1 cut(s)	174
BseJI	GATNNNNATC	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	103
BseYI	CCCAGC	1 cut(s)	448
BsgI	GTGCAG	1 cut(s)	313
BshFI	GGCC	3 cut(s)	65, 101, 143
BsiHKAI	GWGCWC	1 cut(s)	421
BsiHKCI	CYCGRG	1 cut(s)	238
BsiSI	CCGG	3 cut(s)	223, 287, 444
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	3 cut(s)	65, 101, 143
Bso31I	GGTCTC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	238
Bsp120I	GGGCCC	1 cut(s)	99
Bsp1286I	GDGCHC	2 cut(s)	103, 421
Bsp143I	GATC	4 cut(s)	168, 193, 210, 304
BspACI	CCGC	3 cut(s)	10, 235, 435
BspANI	GGCC	3 cut(s)	65, 101, 143
BspCNI	CTCAG	1 cut(s)	84
BspLI	GGNNCC	3 cut(s)	79, 100, 101
BspPI	GGATC	2 cut(s)	218, 312
BspTNI	GGTCTC	1 cut(s)	155
BsrBI	CCGCTC	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	281
BsrFI	RCCGGY	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	286
BssMI	GATC	4 cut(s)	168, 193, 210, 304
BssSI	CACGAG	1 cut(s)	104
Bst2BI	CACGAG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	191
BstC8I	GCNNGC	2 cut(s)	288, 292
BstDEI	CTNAG	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	174
BstKTI	GATC	4 cut(s)	171, 196, 213, 307
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	4 cut(s)	168, 193, 210, 304
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	221, 443
BstSLI	GKGCMC	1 cut(s)	103
BsuRI	GGCC	3 cut(s)	65, 101, 143
BtsCI	GGATG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	288, 292
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	4 cut(s)	78, 99, 100, 142
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	2 cut(s)	46, 335
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	4 cut(s)	170, 195, 212, 306
DpnII	GATC	4 cut(s)	168, 193, 210, 304
Eco24I	GRGCYC	1 cut(s)	103
Eco31I	GGTCTC	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	238
EcoO109I	RGGNCCY	2 cut(s)	78, 99
EcoRI	GAATTC	1 cut(s)	34
EcoT38I	GRGCYC	1 cut(s)	103
FaeI	CATG	2 cut(s)	49, 338
FaiI	YATR	3 cut(s)	14, 47, 336
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	2 cut(s)	45, 334
FauI	CCCGC	1 cut(s)	428
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	103
FspBI	CTAG	1 cut(s)	348
GsaI	CCCAGC	1 cut(s)	452
HaeIII	GGCC	3 cut(s)	65, 101, 143
HapII	CCGG	3 cut(s)	223, 287, 444
Hin1II	CATG	2 cut(s)	49, 338
HinfI	GANTC	2 cut(s)	6, 395
HpaII	CCGG	3 cut(s)	223, 287, 444
Hpy188I	TCNGA	5 cut(s)	187, 210, 254, 372, 400
Hpy188III	TCNNGA	1 cut(s)	197
HpyAV	CCTTC	2 cut(s)	76, 295
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4V	TGCA	1 cut(s)	294
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	92
Hsp92II	CATG	2 cut(s)	49, 338
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
Kzo9I	GATC	4 cut(s)	168, 193, 210, 304
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	8 cut(s)	60, 73, 236, 280, 300, 396, 419, 434
LweI	GCATC	1 cut(s)	287
MaeI	CTAG	1 cut(s)	348
MalI	GATC	4 cut(s)	170, 195, 212, 306
MbiI	CCGCTC	1 cut(s)	237
MboI	GATC	4 cut(s)	168, 193, 210, 304
MboII	GAAGA	4 cut(s)	310, 367, 370, 436
MfeI	CAATTG	1 cut(s)	29
MhlI	GDGCHC	2 cut(s)	103, 421
MluCI	AATT	3 cut(s)	29, 34, 156
MmeI	TCCRAC	3 cut(s)	188, 210, 423
MnlI	CCTC	3 cut(s)	89, 91, 133
MroNI	GCCGGC	1 cut(s)	286
MspI	CCGG	3 cut(s)	223, 287, 444
MspR9I	CCNGG	2 cut(s)	223, 445
MunI	CAATTG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	140
NaeI	GCCGGC	1 cut(s)	288
NciI	CCSGG	2 cut(s)	223, 445
NdeII	GATC	4 cut(s)	168, 193, 210, 304
NgoMIV	GCCGGC	1 cut(s)	286
NlaIII	CATG	2 cut(s)	49, 338
NlaIV	GGNNCC	3 cut(s)	79, 100, 101
NspI	RCATGY	1 cut(s)	338
PaeR7I	CTCGAG	1 cut(s)	238
PciI	ACATGT	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PdiI	GCCGGC	1 cut(s)	288
PfeI	GAWTC	2 cut(s)	6, 395
PpuMI	RGGWCCY	1 cut(s)	78
PscI	ACATGT	1 cut(s)	334
Psp5II	RGGWCCY	1 cut(s)	78
PspFI	CCCAGC	1 cut(s)	448
PspN4I	GGNNCC	3 cut(s)	79, 100, 101
PspOMI	GGGCCC	1 cut(s)	99
PspPI	GGNCC	4 cut(s)	78, 99, 100, 142
PspPPI	RGGWCCY	1 cut(s)	78
PspXI	VCTCGAGB	1 cut(s)	238
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
Sau3AI	GATC	4 cut(s)	168, 193, 210, 304
Sau96I	GGNCC	4 cut(s)	78, 99, 100, 142
ScrFI	CCNGG	2 cut(s)	223, 445
SduI	GDGCHC	2 cut(s)	103, 421
SetI	ASST	5 cut(s)	43, 83, 167, 218, 314
SfaNI	GCATC	1 cut(s)	287
Sfr274I	CTCGAG	1 cut(s)	238
SinI	GGWCC	1 cut(s)	78
SlaI	CTCGAG	1 cut(s)	238
SmlI	CTYRAG	1 cut(s)	238
SmoI	CTYRAG	1 cut(s)	238
Sse9I	AATT	3 cut(s)	29, 34, 156
SsiI	CCGC	3 cut(s)	10, 235, 435
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	2 cut(s)	221, 443
TaaI	ACNGT	1 cut(s)	191
TaqI	TCGA	2 cut(s)	218, 239
TasI	AATT	3 cut(s)	29, 34, 156
TfiI	GAWTC	2 cut(s)	6, 395
TscAI	CASTG	1 cut(s)	196
TspDTI	ATGAA	2 cut(s)	234, 425
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	78
XapI	RAATTY	1 cut(s)	34
XceI	RCATGY	1 cut(s)	338
XhoI	CTCGAG	1 cut(s)	238
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.