Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004301.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Forward (+)

80989 .. 82942

Gene Structure 1954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004301.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgtacagcgcagcaaggcggcgcagtttggtattttctgaccaggtcagaaaacgtagctccggcgacgttttcaacaactgcgagagagccaaagaggcccaaatccacgggatcgagaccttgatctgcatcccaacttccgacggtgtccttgaaatgggttcctccgatttgatcaaagagaactgggggttgatccagcaagccaagtcgttgttcgggtcggatcagcctgacccggaaccaagatcgctcgagttcatcaaccggaacttctccatttttgacatcggcatcattgccggtgtgcaggaagaggatcacagctcgtacaatgacaacaagaaacatgtttttggttctaacaagaagaagaacggagctccgagcccaaacccggacttccagattccgactgccagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

142

Amino Acids

15.86

Weight (kDa)

6.29

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	19
AclWI	GGATC	4 cut(s)	122, 193, 237, 330
AfaI	GTAC	2 cut(s)	5, 335
AfiI	CCNNNNNNNGG	2 cut(s)	160, 400
AflIII	ACRYGT	1 cut(s)	352
AgsI	TTSAA	2 cut(s)	76, 158
AjnI	CCWGG	1 cut(s)	42
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	3 cut(s)	60, 330, 386
AluI	AGCT	3 cut(s)	60, 330, 386
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	4 cut(s)	122, 193, 237, 330
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	11
AspLEI	GCGC	2 cut(s)	11, 24
AspS9I	GGNCC	1 cut(s)	100
AsuC2I	CCSGG	2 cut(s)	242, 401
AvaI	CYCGRG	1 cut(s)	257
BanII	GRGCYC	2 cut(s)	388, 395
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	44
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	2 cut(s)	242, 401
BcoDI	GTCTC	1 cut(s)	113
BglI	GCCNNNNNGGC	1 cut(s)	98
BisI	GCNGC	2 cut(s)	12, 20
BlsI	GCNGC	2 cut(s)	13, 21
Bme1390I	CCNGG	3 cut(s)	44, 242, 401
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	2 cut(s)	166, 246
BmrFI	CCNGG	3 cut(s)	44, 242, 401
BmrI	ACTGGG	1 cut(s)	199
BmsI	GCATC	2 cut(s)	141, 306
BmuI	ACTGGG	1 cut(s)	199
BpuMI	CCSGG	2 cut(s)	242, 401
BsaBI	GATNNNNATC	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	109
BsaWI	WCCGGW	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 400
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	300
Bse8I	GATNNNNATC	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	1 cut(s)	132
BseJI	GATNNNNATC	1 cut(s)	131
BseLI	CCNNNNNNNGG	2 cut(s)	160, 400
BseMI	GCAATG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	332
BshFI	GGCC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	388
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	5 cut(s)	63, 242, 271, 306, 401
BslI	CCNNNNNNNGG	2 cut(s)	160, 400
BsmAI	GTCTC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	101
Bso31I	GGTCTC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	388, 395
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	7 cut(s)	114, 126, 177, 198, 229, 251, 322
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	1 cut(s)	101
BspLI	GGNNCC	2 cut(s)	166, 246
BspPI	GGATC	4 cut(s)	122, 193, 237, 330
BspTNI	GGTCTC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	300
BsrFI	RCCGGY	1 cut(s)	305
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	7 cut(s)	114, 126, 177, 198, 229, 251, 322
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	1 cut(s)	312
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	207
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	132
BstHHI	GCGC	2 cut(s)	11, 24
BstKTI	GATC	7 cut(s)	117, 129, 180, 201, 232, 254, 325
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	7 cut(s)	114, 126, 177, 198, 229, 251, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	44
BstNSI	RCATGY	1 cut(s)	356
BstSCI	CCNGG	3 cut(s)	42, 240, 399
BstV1I	GCAGC	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	101
BtgI	CCRYGG	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	207
CfoI	GCGC	2 cut(s)	11, 24
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	100
CsiI	ACCWGGT	1 cut(s)	42
Csp6I	GTAC	2 cut(s)	4, 334
CviAII	CATG	1 cut(s)	353
CviJI	RGCY	8 cut(s)	60, 92, 101, 209, 235, 330, 386, 393
CviKI_1	RGCY	8 cut(s)	60, 92, 101, 209, 235, 330, 386, 393
CviQI	GTAC	2 cut(s)	4, 334
DpnI	GATC	7 cut(s)	116, 128, 179, 200, 231, 253, 324
DpnII	GATC	7 cut(s)	114, 126, 177, 198, 229, 251, 322
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Ecl136II	GAGCTC	1 cut(s)	386
Eco24I	GRGCYC	2 cut(s)	388, 395
Eco31I	GGTCTC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	386
Eco88I	CYCGRG	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	42
EcoT38I	GRGCYC	2 cut(s)	388, 395
FaeI	CATG	1 cut(s)	356
FaiI	YATR	1 cut(s)	354
FatI	CATG	1 cut(s)	352
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	2 cut(s)	12, 20
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	2 cut(s)	388, 395
Fsp4HI	GCNGC	2 cut(s)	12, 20
GlaI	GCGC	2 cut(s)	10, 23
GluI	GCNGC	2 cut(s)	12, 20
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	5 cut(s)	63, 242, 271, 306, 401
HhaI	GCGC	2 cut(s)	11, 24
Hin1II	CATG	1 cut(s)	356
Hin6I	GCGC	2 cut(s)	9, 22
HinP1I	GCGC	2 cut(s)	9, 22
HinfI	GANTC	1 cut(s)	412
HpaII	CCGG	5 cut(s)	63, 242, 271, 306, 401
Hpy188I	TCNGA	7 cut(s)	40, 50, 145, 172, 229, 390, 417
Hpy188III	TCNNGA	2 cut(s)	118, 409
Hpy99I	CGWCG	2 cut(s)	71, 149
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	2 cut(s)	55, 69
HpyCH4V	TGCA	2 cut(s)	132, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpySE526I	ACGT	2 cut(s)	55, 69
Hsp92II	CATG	1 cut(s)	356
HspAI	GCGC	2 cut(s)	9, 22
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	7 cut(s)	114, 126, 177, 198, 229, 251, 322
LmnI	GCTCC	3 cut(s)	65, 383, 391
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	2 cut(s)	141, 306
MabI	ACCWGGT	1 cut(s)	42
MaeII	ACGT	2 cut(s)	55, 69
MalI	GATC	7 cut(s)	116, 128, 179, 200, 231, 253, 324
MboI	GATC	7 cut(s)	114, 126, 177, 198, 229, 251, 322
MboII	GAAGA	3 cut(s)	329, 385, 388
MhlI	GDGCHC	2 cut(s)	388, 395
MmeI	TCCRAC	2 cut(s)	168, 207
MnlI	CCTC	3 cut(s)	91, 178, 313
MspI	CCGG	5 cut(s)	63, 242, 271, 306, 401
MspR9I	CCNGG	3 cut(s)	44, 242, 401
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	98
NciI	CCSGG	2 cut(s)	242, 401
NdeII	GATC	7 cut(s)	114, 126, 177, 198, 229, 251, 322
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	2 cut(s)	166, 246
NspI	RCATGY	1 cut(s)	356
PaeR7I	CTCGAG	1 cut(s)	257
PciI	ACATGT	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	412
PflFI	GACNNNGTC	2 cut(s)	44, 149
PkrI	GCNGC	2 cut(s)	13, 21
PscI	ACATGT	1 cut(s)	352
Psp124BI	GAGCTC	1 cut(s)	388
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	2 cut(s)	166, 246
PspPI	GGNCC	1 cut(s)	100
PspXI	VCTCGAGB	1 cut(s)	257
PsyI	GACNNNGTC	2 cut(s)	44, 149
RsaI	GTAC	2 cut(s)	5, 335
RsaNI	GTAC	2 cut(s)	4, 334
SacI	GAGCTC	1 cut(s)	388
SatI	GCNGC	2 cut(s)	12, 20
Sau3AI	GATC	7 cut(s)	114, 126, 177, 198, 229, 251, 322
Sau96I	GGNCC	1 cut(s)	100
ScrFI	CCNGG	3 cut(s)	44, 242, 401
SduI	GDGCHC	2 cut(s)	388, 395
SetI	ASST	7 cut(s)	48, 58, 62, 72, 125, 332, 388
SexAI	ACCWGGT	1 cut(s)	42
SfaNI	GCATC	2 cut(s)	141, 306
Sfr274I	CTCGAG	1 cut(s)	257
SlaI	CTCGAG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SsiI	CCGC	1 cut(s)	19
SstI	GAGCTC	1 cut(s)	388
StyD4I	CCNGG	3 cut(s)	42, 240, 399
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	2 cut(s)	58, 72
TaqI	TCGA	2 cut(s)	117, 258
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	412
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	253
TspGWI	ACGGA	1 cut(s)	396
Tth111I	GACNNNGTC	2 cut(s)	44, 149
XceI	RCATGY	1 cut(s)	356
XhoI	CTCGAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.