RchiOBHm_Chr5g0055891
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000212
Physical Location & Seq
Forward (+)
59256443 .. 59257117
675 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33283

Sequence Viewer

Length: 675 bp
ATGCCCTCAGTTCTTTTTTTTTTTTTAATAATTTTTTTTCTGTTATTTTTTTTTCCTTCGTTTTTATCTCTTTCTTCTTCCTTCTTCCGAGCTTACTCCCTCACTCGATCTTTCGTCGTCGGGGACGGCTTTGTTCCCAACAAGGCCTTCGGCTCCGGGACCTCAATCTGGCTGAGCGGGGCCCACGAGCTTCAGTTCAACAACTGTGAGAGAGCCAAAGAGGCCCAAATCCACTGGATCGAGACCTTGATCTGCATCCCAACTTTCGACGGTGTTCTTGAAATGGGTTCCTCCGGTTTGATCAGAGAGAACTGGGGGTTGATCCAGCAAGCCAAGTCGTTGTTCCGGTCGGATCAGCCCGACCCGGAAACAAGACCGCTCGAGTTCATCAACCAGAACTTCTCCATTTTTGACATCGGCATCATTGCCGGCGTGCAGGAAGAGGATCACAGCTCGTACAATTACAACAAGAAACATGTTTTTGGTTCTAGCAAGAAGAAGAACGGAGCTCCGAACCCAAACCCGGACTTCGCAGATTCCGACTGCCAGATGAAAAGAGCGCCGAAGAAACTGGGCCGGAAACCCGAGCTGGGCCGAGACACGCCGCTCAACCACGTGGAGGCGAAGCGGCAGCGGCGGGAGAAGCTCACCTCGCAAGGGCGATGTTGGAAGTGA

Protein Analysis

224

Amino Acids

25.52

Weight (kDa)

9.06

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 27 - 115 5.8e-22 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 177, 379, 607
AciI CCGC 6 cut(s) 177, 377, 605, 628, 634, 637
AclWI GGATC 4 cut(s) 245, 316, 360, 453
AcuI CTGAAG 1 cut(s) 176
AcvI CACGTG 1 cut(s) 616
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 5 cut(s) 168, 523, 590, 619, 657
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 2 cut(s) 199, 281
AjuI GAANNNNNNNTTGG 4 cut(s) 131, 163, 326, 358
AluBI AGCT 6 cut(s) 92, 190, 453, 509, 589, 646
AluI AGCT 6 cut(s) 92, 190, 453, 509, 589, 646
Alw21I GWGCWC 1 cut(s) 511
Alw26I GTCTC 2 cut(s) 236, 591
AlwI GGATC 4 cut(s) 245, 316, 360, 453
Ama87I CYCGRG 2 cut(s) 380, 584
AoxI GGCC 5 cut(s) 144, 180, 222, 574, 592
ApaI GGGCCC 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 631
AspLEI GCGC 1 cut(s) 562
AspS9I GGNCC 6 cut(s) 159, 180, 181, 223, 574, 592
AsuC2I CCSGG 3 cut(s) 157, 365, 524
AsuHPI GGTGA 1 cut(s) 640
AvaI CYCGRG 2 cut(s) 380, 584
AvaII GGWCC 1 cut(s) 159
BaeGI GKGCMC 1 cut(s) 184
BanII GRGCYC 2 cut(s) 184, 511
BauI CACGAG 1 cut(s) 185
BbrPI CACGTG 1 cut(s) 616
Bbv12I GWGCWC 1 cut(s) 511
BbvI GCAGC 1 cut(s) 643
BceAI ACGGC 1 cut(s) 142
BclI TGATCA 1 cut(s) 300
BcnI CCSGG 3 cut(s) 157, 365, 524
BcoDI GTCTC 2 cut(s) 236, 591
BfaI CTAG 1 cut(s) 489
BfoI RGCGCY 1 cut(s) 563
BglI GCCNNNNNGGC 1 cut(s) 221
BisI GCNGC 4 cut(s) 605, 629, 632, 635
BlpI GCTNAGC 1 cut(s) 173
BlsI GCNGC 4 cut(s) 606, 630, 633, 636
Bme1390I CCNGG 3 cut(s) 157, 365, 524
Bme18I GGWCC 1 cut(s) 159
BmeT110I CYCGRG 2 cut(s) 380, 584
BmgT120I GGNCC 6 cut(s) 159, 180, 181, 223, 574, 592
BmiI GGNNCC 5 cut(s) 154, 160, 181, 182, 289
BmrFI CCNGG 3 cut(s) 157, 365, 524
BmrI ACTGGG 2 cut(s) 322, 581
BmsI GCATC 2 cut(s) 264, 429
BmuI ACTGGG 2 cut(s) 322, 581
Bpu1102I GCTNAGC 1 cut(s) 173
BpuMI CCSGG 3 cut(s) 157, 365, 524
BsaAI YACGTR 1 cut(s) 616
BsaBI GATNNNNATC 1 cut(s) 254
BsaI GGTCTC 1 cut(s) 236
BsaWI WCCGGW 2 cut(s) 293, 345
Bsc4I CCNNNNNNNGG 5 cut(s) 168, 523, 590, 619, 657
Bse118I RCCGGY 1 cut(s) 428
Bse1I ACTGG 3 cut(s) 239, 317, 576
Bse3DI GCAATG 1 cut(s) 423
Bse8I GATNNNNATC 1 cut(s) 254
BseGI GGATG 1 cut(s) 255
BseJI GATNNNNATC 1 cut(s) 254
BseLI CCNNNNNNNGG 5 cut(s) 168, 523, 590, 619, 657
BseMI GCAATG 1 cut(s) 423
BseMII CTCAG 2 cut(s) 21, 164
BseNI ACTGG 3 cut(s) 239, 317, 576
BseSI GKGCMC 1 cut(s) 184
BseXI GCAGC 1 cut(s) 643
BseYI CCCAGC 1 cut(s) 589
BsgI GTGCAG 1 cut(s) 455
Bsh1285I CGRYCG 1 cut(s) 350
BshFI GGCC 5 cut(s) 146, 182, 224, 576, 594
BsiEI CGRYCG 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 511
BsiHKCI CYCGRG 2 cut(s) 380, 584
BsiSI CCGG 7 cut(s) 156, 294, 346, 365, 429, 524, 577
BslFI GGGAC 2 cut(s) 137, 172
BslI CCNNNNNNNGG 5 cut(s) 168, 523, 590, 619, 657
BsmAI GTCTC 2 cut(s) 236, 591
BsmFI GGGAC 2 cut(s) 137, 172
BsnI GGCC 5 cut(s) 146, 182, 224, 576, 594
Bso31I GGTCTC 1 cut(s) 236
BsoBI CYCGRG 2 cut(s) 380, 584
Bsp120I GGGCCC 1 cut(s) 180
Bsp1286I GDGCHC 2 cut(s) 184, 511
Bsp143I GATC 7 cut(s) 107, 237, 249, 300, 321, 352, 445
Bsp1720I GCTNAGC 1 cut(s) 173
BspACI CCGC 6 cut(s) 177, 377, 605, 628, 634, 637
BspANI GGCC 5 cut(s) 146, 182, 224, 576, 594
BspCNI CTCAG 2 cut(s) 20, 165
BspLI GGNNCC 5 cut(s) 154, 160, 181, 182, 289
BspPI GGATC 4 cut(s) 245, 316, 360, 453
BspTNI GGTCTC 1 cut(s) 236
BsrBI CCGCTC 3 cut(s) 177, 379, 607
BsrDI GCAATG 1 cut(s) 423
BsrFI RCCGGY 1 cut(s) 428
BsrI ACTGG 3 cut(s) 239, 317, 576
BssAI RCCGGY 1 cut(s) 428
BssMI GATC 7 cut(s) 107, 237, 249, 300, 321, 352, 445
BssSI CACGAG 1 cut(s) 185
Bst2BI CACGAG 1 cut(s) 185
Bst4CI ACNGT 2 cut(s) 206, 272
Bst6I CTCTTC 1 cut(s) 435
BstBAI YACGTR 1 cut(s) 616
BstC8I GCNNGC 3 cut(s) 330, 430, 434
BstDEI CTNAG 2 cut(s) 7, 173
BstF5I GGATG 1 cut(s) 255
BstH2I RGCGCY 1 cut(s) 563
BstHHI GCGC 1 cut(s) 562
BstKTI GATC 7 cut(s) 110, 240, 252, 303, 324, 355, 448
BstMAI GTCTC 2 cut(s) 236, 591
BstMBI GATC 7 cut(s) 107, 237, 249, 300, 321, 352, 445
BstMCI CGRYCG 1 cut(s) 350
BstMWI GCNNNNNNNGC 4 cut(s) 221, 634, 643, 652
BstNSI RCATGY 1 cut(s) 479
BstSCI CCNGG 3 cut(s) 155, 363, 522
BstSLI GKGCMC 1 cut(s) 184
BstV1I GCAGC 1 cut(s) 643
BsuRI GGCC 5 cut(s) 146, 182, 224, 576, 594
BtsCI GGATG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 232
Cac8I GCNNGC 3 cut(s) 330, 430, 434
CfoI GCGC 1 cut(s) 562
Cfr10I RCCGGY 1 cut(s) 428
Cfr13I GGNCC 6 cut(s) 159, 180, 181, 223, 574, 592
Csp6I GTAC 1 cut(s) 457
CviAII CATG 1 cut(s) 476
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 2 cut(s) 7, 173
DpnI GATC 7 cut(s) 109, 239, 251, 302, 323, 354, 447
DpnII GATC 7 cut(s) 107, 237, 249, 300, 321, 352, 445
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Ecl136II GAGCTC 1 cut(s) 509
Eco147I AGGCCT 1 cut(s) 146
Eco24I GRGCYC 2 cut(s) 184, 511
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 509
Eco57I CTGAAG 1 cut(s) 176
Eco72I CACGTG 1 cut(s) 616
Eco88I CYCGRG 2 cut(s) 380, 584
EcoICRI GAGCTC 1 cut(s) 509
EcoO109I RGGNCCY 2 cut(s) 159, 180
EcoT38I GRGCYC 2 cut(s) 184, 511
FaeI CATG 1 cut(s) 479
FaiI YATR 1 cut(s) 477
FaqI GGGAC 2 cut(s) 137, 172
FatI CATG 1 cut(s) 475
FauI CCCGC 2 cut(s) 170, 630
FbaI TGATCA 1 cut(s) 300
Fnu4HI GCNGC 4 cut(s) 605, 629, 632, 635
FokI GGATG 1 cut(s) 242
FriOI GRGCYC 2 cut(s) 184, 511
Fsp4HI GCNGC 4 cut(s) 605, 629, 632, 635
FspBI CTAG 1 cut(s) 489
GlaI GCGC 1 cut(s) 561
GluI GCNGC 4 cut(s) 605, 629, 632, 635
GsaI CCCAGC 1 cut(s) 593
HaeII RGCGCY 1 cut(s) 563
HaeIII GGCC 5 cut(s) 146, 182, 224, 576, 594
HapII CCGG 7 cut(s) 156, 294, 346, 365, 429, 524, 577
HhaI GCGC 1 cut(s) 562
Hin1II CATG 1 cut(s) 479
Hin6I GCGC 1 cut(s) 560
HinP1I GCGC 1 cut(s) 560
HinfI GANTC 1 cut(s) 536
HpaII CCGG 7 cut(s) 156, 294, 346, 365, 429, 524, 577
HphI GGTGA 1 cut(s) 640
Hpy188I TCNGA 5 cut(s) 89, 305, 352, 513, 541
Hpy188III TCNNGA 2 cut(s) 241, 278
Hpy99I CGWCG 3 cut(s) 119, 122, 272
HpyAV CCTTC 3 cut(s) 66, 91, 157
HpyCH4III ACNGT 2 cut(s) 206, 272
HpyCH4IV ACGT 1 cut(s) 615
HpyCH4V TGCA 2 cut(s) 255, 436
HpyF10VI GCNNNNNNNGC 4 cut(s) 221, 634, 643, 652
HpyF3I CTNAG 2 cut(s) 7, 173
HpySE526I ACGT 1 cut(s) 615
Hsp92II CATG 1 cut(s) 479
HspAI GCGC 1 cut(s) 560
KroI GCCGGC 1 cut(s) 428
KroNI GCCGGC 1 cut(s) 430
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 7 cut(s) 107, 237, 249, 300, 321, 352, 445
LmnI GCTCC 3 cut(s) 158, 506, 514
Lsp1109I GCAGC 1 cut(s) 643
LweI GCATC 2 cut(s) 264, 429
MaeI CTAG 1 cut(s) 489
MaeII ACGT 1 cut(s) 615
MalI GATC 7 cut(s) 109, 239, 251, 302, 323, 354, 447
MbiI CCGCTC 3 cut(s) 177, 379, 607
MboI GATC 7 cut(s) 107, 237, 249, 300, 321, 352, 445
MboII GAAGA 7 cut(s) 66, 69, 76, 452, 508, 511, 577
MhlI GDGCHC 2 cut(s) 184, 511
MluCI AATT 2 cut(s) 30, 460
MmeI TCCRAC 3 cut(s) 330, 564, 647
MnlI CCTC 8 cut(s) 16, 110, 172, 214, 301, 436, 613, 661
MroNI GCCGGC 1 cut(s) 428
MseI TTAA 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 634
MspI CCGG 7 cut(s) 156, 294, 346, 365, 429, 524, 577
MspR9I CCNGG 3 cut(s) 157, 365, 524
MwoI GCNNNNNNNGC 4 cut(s) 221, 634, 643, 652
NaeI GCCGGC 1 cut(s) 430
NciI CCSGG 3 cut(s) 157, 365, 524
NdeII GATC 7 cut(s) 107, 237, 249, 300, 321, 352, 445
NgoMIV GCCGGC 1 cut(s) 428
NlaIII CATG 1 cut(s) 479
NlaIV GGNNCC 5 cut(s) 154, 160, 181, 182, 289
NmeAIII GCCGAG 1 cut(s) 620
NspI RCATGY 1 cut(s) 479
PaeR7I CTCGAG 1 cut(s) 380
PceI AGGCCT 1 cut(s) 146
PciI ACATGT 1 cut(s) 475
PcsI WCGNNNNNNNCGW 1 cut(s) 537
PdiI GCCGGC 1 cut(s) 430
PfeI GAWTC 1 cut(s) 536
PfoI TCCNGGA 1 cut(s) 155
PkrI GCNGC 4 cut(s) 606, 630, 633, 636
PmaCI CACGTG 1 cut(s) 616
PmlI CACGTG 1 cut(s) 616
Ppu21I YACGTR 1 cut(s) 616
PpuMI RGGWCCY 1 cut(s) 159
PscI ACATGT 1 cut(s) 475
Psp124BI GAGCTC 1 cut(s) 511
Psp5II RGGWCCY 1 cut(s) 159
PspCI CACGTG 1 cut(s) 616
PspFI CCCAGC 1 cut(s) 589
PspN4I GGNNCC 5 cut(s) 154, 160, 181, 182, 289
PspOMI GGGCCC 1 cut(s) 180
PspPI GGNCC 6 cut(s) 159, 180, 181, 223, 574, 592
PspPPI RGGWCCY 1 cut(s) 159
PspXI VCTCGAGB 1 cut(s) 380
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
SacI GAGCTC 1 cut(s) 511
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 4 cut(s) 605, 629, 632, 635
Sau3AI GATC 7 cut(s) 107, 237, 249, 300, 321, 352, 445
Sau96I GGNCC 6 cut(s) 159, 180, 181, 223, 574, 592
ScrFI CCNGG 3 cut(s) 157, 365, 524
SduI GDGCHC 2 cut(s) 184, 511
SfaNI GCATC 2 cut(s) 264, 429
Sfr274I CTCGAG 1 cut(s) 380
SinI GGWCC 1 cut(s) 159
SlaI CTCGAG 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 2 cut(s) 30, 460
SseBI AGGCCT 1 cut(s) 146
SsiI CCGC 6 cut(s) 177, 377, 605, 628, 634, 637
SspMI CTAG 1 cut(s) 489
SstI GAGCTC 1 cut(s) 511
StuI AGGCCT 1 cut(s) 146
StyD4I CCNGG 3 cut(s) 155, 363, 522
TaaI ACNGT 2 cut(s) 206, 272
TaiI ACGT 1 cut(s) 618
TaqI TCGA 4 cut(s) 106, 240, 267, 381
TasI AATT 2 cut(s) 30, 460
TauI GCSGC 3 cut(s) 607, 631, 637
TfiI GAWTC 1 cut(s) 536
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 1 cut(s) 239
TseI GCWGC 1 cut(s) 631
TspDTI ATGAA 2 cut(s) 376, 566
TspGWI ACGGA 1 cut(s) 519
TspRI CASTG 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 159
XceI RCATGY 1 cut(s) 479
XhoI CTCGAG 1 cut(s) 380
XspI CTAG 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.