Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003546.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Reverse (-)

131086 .. 131667

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003546.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ctgagcagggcccacgagcttcagttcaacaactgcaagagagccaaaaaggcccaagtccacgggatcgagaccttgatctgcatcccaacttctgacggtgttcttgaaatgggttcctccggtttgatcagagagaactgggggttgatccaggaagccaagtcgttgttcgggtcggatcagcccgacccgaaaacaagaccgtttgagttcatcaaccggaacttctccatttttaacatcggcatcattaccggcgtgcagaaagaggatcacagctcgtacaatgacgacaagaaacatgtttttggttctagcaagaagaaaaacggagctccgaacccaaacccggacttcgcagattccgactgccagatgaaaagagcgccgaagaaacggggccggaaaccagagctgggtcgagacatgctgcttaaccacgtagaggcggagcggcagcggcgggagaagctcacctcccaagggagacgttggaagcgagggagtgagcgtggaggtgaggaaggcggcgttggaagcgagggagtgagcccggaagaaggaagaagaaagagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

193

Amino Acids

21.73

Weight (kDa)

9.71

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	457
AciI	CCGC	5 cut(s)	452, 457, 463, 466, 531
AclWI	GGATC	4 cut(s)	74, 145, 189, 282
AcuI	CTGAAG	1 cut(s)	5
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	5 cut(s)	352, 419, 448, 486, 563
AflIII	ACRYGT	1 cut(s)	304
AgsI	TTSAA	2 cut(s)	28, 110
AjnI	CCWGG	1 cut(s)	153
AjuI	GAANNNNNNNTTGG	4 cut(s)	155, 187, 519, 551
AluBI	AGCT	5 cut(s)	19, 282, 338, 418, 475
AluI	AGCT	5 cut(s)	19, 282, 338, 418, 475
Alw21I	GWGCWC	1 cut(s)	340
Alw26I	GTCTC	3 cut(s)	65, 420, 484
AlwI	GGATC	4 cut(s)	74, 145, 189, 282
AoxI	GGCC	3 cut(s)	9, 51, 403
ApaI	GGGCCC	1 cut(s)	13
ApeKI	GCWGC	2 cut(s)	433, 460
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	4 cut(s)	9, 10, 52, 403
AsuC2I	CCSGG	2 cut(s)	353, 557
AsuHPI	GGTGA	2 cut(s)	469, 533
BaeGI	GKGCMC	1 cut(s)	13
BanII	GRGCYC	3 cut(s)	13, 340, 557
BauI	CACGAG	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	2 cut(s)	420, 472
BciT130I	CCWGG	1 cut(s)	155
BclI	TGATCA	1 cut(s)	129
BcnI	CCSGG	2 cut(s)	353, 557
BcoDI	GTCTC	3 cut(s)	65, 420, 484
BfaI	CTAG	1 cut(s)	318
BfoI	RGCGCY	1 cut(s)	392
BglI	GCCNNNNNGGC	1 cut(s)	50
BisI	GCNGC	5 cut(s)	434, 458, 461, 464, 532
BlsI	GCNGC	5 cut(s)	435, 459, 462, 465, 533
Bme1390I	CCNGG	3 cut(s)	155, 353, 557
BmgT120I	GGNCC	4 cut(s)	9, 10, 52, 403
BmiI	GGNNCC	3 cut(s)	11, 118, 404
BmrFI	CCNGG	3 cut(s)	155, 353, 557
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	2 cut(s)	93, 258
BmuI	ACTGGG	1 cut(s)	151
BpuMI	CCSGG	2 cut(s)	353, 557
BsaAI	YACGTR	1 cut(s)	445
BsaBI	GATNNNNATC	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	2 cut(s)	61, 484
BsaWI	WCCGGW	2 cut(s)	122, 222
BsaXI	ACNNNNNCTCC	2 cut(s)	499, 529
Bsc4I	CCNNNNNNNGG	5 cut(s)	352, 419, 448, 486, 563
Bse118I	RCCGGY	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	146
Bse8I	GATNNNNATC	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	61, 484
BseGI	GGATG	1 cut(s)	84
BseJI	GATNNNNATC	1 cut(s)	83
BseLI	CCNNNNNNNGG	5 cut(s)	352, 419, 448, 486, 563
BseNI	ACTGG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	13
BseXI	GCAGC	2 cut(s)	420, 472
BseYI	CCCAGC	1 cut(s)	418
BsgI	GTGCAG	1 cut(s)	284
BshFI	GGCC	3 cut(s)	11, 53, 405
BsiHKAI	GWGCWC	1 cut(s)	340
BsiSI	CCGG	6 cut(s)	123, 223, 258, 353, 406, 557
BslI	CCNNNNNNNGG	5 cut(s)	352, 419, 448, 486, 563
BsmAI	GTCTC	3 cut(s)	65, 420, 484
BsmBI	CGTCTC	1 cut(s)	484
BsnI	GGCC	3 cut(s)	11, 53, 405
Bso31I	GGTCTC	1 cut(s)	65
Bsp120I	GGGCCC	1 cut(s)	9
Bsp1286I	GDGCHC	3 cut(s)	13, 340, 557
Bsp143I	GATC	6 cut(s)	66, 78, 129, 150, 181, 274
BspACI	CCGC	5 cut(s)	452, 457, 463, 466, 531
BspANI	GGCC	3 cut(s)	11, 53, 405
BspLI	GGNNCC	3 cut(s)	11, 118, 404
BspPI	GGATC	4 cut(s)	74, 145, 189, 282
BspTNI	GGTCTC	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	457
BsrFI	RCCGGY	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	2 cut(s)	61, 484
BssMI	GATC	6 cut(s)	66, 78, 129, 150, 181, 274
BssSI	CACGAG	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	484
Bst2BI	CACGAG	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	2 cut(s)	101, 207
BstBAI	YACGTR	1 cut(s)	445
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	1 cut(s)	2
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	84
BstH2I	RGCGCY	1 cut(s)	392
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	6 cut(s)	69, 81, 132, 153, 184, 277
BstMAI	GTCTC	3 cut(s)	65, 420, 484
BstMBI	GATC	6 cut(s)	66, 78, 129, 150, 181, 274
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 463, 472, 540
BstNI	CCWGG	1 cut(s)	155
BstNSI	RCATGY	2 cut(s)	308, 433
BstSCI	CCNGG	3 cut(s)	153, 351, 555
BstSLI	GKGCMC	1 cut(s)	13
BstV1I	GCAGC	2 cut(s)	420, 472
BsuRI	GGCC	3 cut(s)	11, 53, 405
BtgI	CCRYGG	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	263
CfoI	GCGC	1 cut(s)	391
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	4 cut(s)	9, 10, 52, 403
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	2 cut(s)	305, 430
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	1 cut(s)	2
DpnI	GATC	6 cut(s)	68, 80, 131, 152, 183, 276
DpnII	GATC	6 cut(s)	66, 78, 129, 150, 181, 274
EciI	GGCGGA	1 cut(s)	467
Ecl136II	GAGCTC	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	484
Eco24I	GRGCYC	3 cut(s)	13, 340, 557
Eco31I	GGTCTC	1 cut(s)	65
Eco53kI	GAGCTC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	5
EcoICRI	GAGCTC	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	484
EcoT38I	GRGCYC	3 cut(s)	13, 340, 557
ErhI	CCWWGG	1 cut(s)	484
Esp3I	CGTCTC	1 cut(s)	484
FaeI	CATG	2 cut(s)	308, 433
FaiI	YATR	2 cut(s)	306, 431
FatI	CATG	2 cut(s)	304, 429
FauI	CCCGC	1 cut(s)	459
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	5 cut(s)	434, 458, 461, 464, 532
FokI	GGATG	1 cut(s)	71
FriOI	GRGCYC	3 cut(s)	13, 340, 557
Fsp4HI	GCNGC	5 cut(s)	434, 458, 461, 464, 532
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	5 cut(s)	434, 458, 461, 464, 532
GsaI	CCCAGC	1 cut(s)	422
HaeII	RGCGCY	1 cut(s)	392
HaeIII	GGCC	3 cut(s)	11, 53, 405
HapII	CCGG	6 cut(s)	123, 223, 258, 353, 406, 557
HhaI	GCGC	1 cut(s)	391
Hin1II	CATG	2 cut(s)	308, 433
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HinfI	GANTC	1 cut(s)	365
HpaII	CCGG	6 cut(s)	123, 223, 258, 353, 406, 557
HphI	GGTGA	2 cut(s)	469, 533
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	5 cut(s)	97, 134, 181, 342, 370
Hpy188III	TCNNGA	3 cut(s)	70, 107, 425
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	521, 557
HpyCH4III	ACNGT	2 cut(s)	101, 207
HpyCH4IV	ACGT	2 cut(s)	444, 493
HpyCH4V	TGCA	3 cut(s)	36, 84, 265
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 463, 472, 540
HpyF3I	CTNAG	1 cut(s)	2
HpySE526I	ACGT	2 cut(s)	444, 493
Hsp92II	CATG	2 cut(s)	308, 433
HspAI	GCGC	1 cut(s)	389
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	6 cut(s)	66, 78, 129, 150, 181, 274
LmnI	GCTCC	3 cut(s)	335, 343, 454
Lsp1109I	GCAGC	2 cut(s)	420, 472
LweI	GCATC	2 cut(s)	93, 258
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	2 cut(s)	444, 493
MalI	GATC	6 cut(s)	68, 80, 131, 152, 183, 276
MbiI	CCGCTC	1 cut(s)	457
MboI	GATC	6 cut(s)	66, 78, 129, 150, 181, 274
MboII	GAAGA	5 cut(s)	337, 406, 572, 579, 582
MhlI	GDGCHC	3 cut(s)	13, 340, 557
MmeI	TCCRAC	4 cut(s)	159, 393, 476, 517
MnlI	CCTC	8 cut(s)	130, 265, 442, 490, 497, 512, 517, 538
MseI	TTAA	2 cut(s)	240, 438
MspA1I	CMGCKG	1 cut(s)	463
MspI	CCGG	6 cut(s)	123, 223, 258, 353, 406, 557
MspR9I	CCNGG	3 cut(s)	155, 353, 557
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	4 cut(s)	50, 463, 472, 540
NciI	CCSGG	2 cut(s)	353, 557
NdeII	GATC	6 cut(s)	66, 78, 129, 150, 181, 274
NlaIII	CATG	2 cut(s)	308, 433
NlaIV	GGNNCC	3 cut(s)	11, 118, 404
NspI	RCATGY	2 cut(s)	308, 433
PciI	ACATGT	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	2 cut(s)	366, 499
PfeI	GAWTC	1 cut(s)	365
PfoI	TCCNGGA	1 cut(s)	153
PkrI	GCNGC	5 cut(s)	435, 459, 462, 465, 533
Ppu21I	YACGTR	1 cut(s)	445
PscI	ACATGT	1 cut(s)	304
Psp124BI	GAGCTC	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	3 cut(s)	11, 118, 404
PspOMI	GGGCCC	1 cut(s)	9
PspPI	GGNCC	4 cut(s)	9, 10, 52, 403
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SacI	GAGCTC	1 cut(s)	340
SaqAI	TTAA	2 cut(s)	240, 438
SatI	GCNGC	5 cut(s)	434, 458, 461, 464, 532
Sau3AI	GATC	6 cut(s)	66, 78, 129, 150, 181, 274
Sau96I	GGNCC	4 cut(s)	9, 10, 52, 403
ScrFI	CCNGG	3 cut(s)	155, 353, 557
SduI	GDGCHC	3 cut(s)	13, 340, 557
SfaNI	GCATC	2 cut(s)	93, 258
SsiI	CCGC	5 cut(s)	452, 457, 463, 466, 531
SspMI	CTAG	1 cut(s)	318
SstI	GAGCTC	1 cut(s)	340
StyD4I	CCNGG	3 cut(s)	153, 351, 555
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	2 cut(s)	101, 207
TaiI	ACGT	2 cut(s)	447, 496
TaqI	TCGA	2 cut(s)	69, 424
TauI	GCSGC	3 cut(s)	460, 466, 534
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	2 cut(s)	240, 438
Tru9I	TTAA	2 cut(s)	240, 438
TseI	GCWGC	2 cut(s)	433, 460
TspDTI	ATGAA	2 cut(s)	205, 395
TspGWI	ACGGA	1 cut(s)	348
XceI	RCATGY	2 cut(s)	308, 433
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.