transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 262, 283 |
| AciI | CCGC | 5 cut(s) | 260, 278, 283, 289, 321 |
| AclWI | GGATC | 2 cut(s) | 65, 108 |
| AcvI | CACGTG | 1 cut(s) | 271 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 245, 274, 317 |
| AflIII | ACRYGT | 1 cut(s) | 130 |
| AgsI | TTSAA | 1 cut(s) | 19 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 350, 382 |
| AluBI | AGCT | 3 cut(s) | 108, 164, 301 |
| AluI | AGCT | 3 cut(s) | 108, 164, 301 |
| Alw21I | GWGCWC | 1 cut(s) | 166 |
| Alw26I | GTCTC | 2 cut(s) | 56, 246 |
| AlwI | GGATC | 2 cut(s) | 65, 108 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 194 |
| Ama87I | CYCGRG | 1 cut(s) | 239 |
| AoxI | GGCC | 3 cut(s) | 42, 229, 247 |
| ApeKI | GCWGC | 2 cut(s) | 286, 362 |
| AspLEI | GCGC | 1 cut(s) | 217 |
| AspS9I | GGNCC | 3 cut(s) | 43, 229, 247 |
| AsuC2I | CCSGG | 3 cut(s) | 179, 240, 241 |
| AsuHPI | GGTGA | 4 cut(s) | 104, 295, 300, 364 |
| AvaI | CYCGRG | 1 cut(s) | 239 |
| BanII | GRGCYC | 1 cut(s) | 166 |
| BbrPI | CACGTG | 1 cut(s) | 271 |
| Bbv12I | GWGCWC | 1 cut(s) | 166 |
| BbvI | GCAGC | 2 cut(s) | 298, 374 |
| BcnI | CCSGG | 3 cut(s) | 179, 240, 241 |
| BcoDI | GTCTC | 2 cut(s) | 56, 246 |
| BfoI | RGCGCY | 1 cut(s) | 218 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 41 |
| BisI | GCNGC | 4 cut(s) | 260, 284, 287, 363 |
| BlsI | GCNGC | 4 cut(s) | 261, 285, 288, 364 |
| Bme1390I | CCNGG | 3 cut(s) | 179, 240, 241 |
| BmeT110I | CYCGRG | 1 cut(s) | 239 |
| BmgT120I | GGNCC | 3 cut(s) | 43, 229, 247 |
| BmrFI | CCNGG | 3 cut(s) | 179, 240, 241 |
| BmsI | GCATC | 1 cut(s) | 84 |
| BpuMI | CCSGG | 3 cut(s) | 179, 240, 241 |
| BsaAI | YACGTR | 1 cut(s) | 271 |
| BsaBI | GATNNNNATC | 1 cut(s) | 74 |
| BsaI | GGTCTC | 1 cut(s) | 56 |
| BsaJI | CCNNGG | 2 cut(s) | 52, 239 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 330, 360 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 245, 274, 317 |
| Bse8I | GATNNNNATC | 1 cut(s) | 74 |
| BseDI | CCNNGG | 2 cut(s) | 52, 239 |
| BseGI | GGATG | 1 cut(s) | 75 |
| BseJI | GATNNNNATC | 1 cut(s) | 74 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 245, 274, 317 |
| BseMII | CTCAG | 1 cut(s) | 201 |
| BseRI | GAGGAG | 1 cut(s) | 391 |
| BseXI | GCAGC | 2 cut(s) | 298, 374 |
| BseYI | CCCAGC | 1 cut(s) | 244 |
| BshFI | GGCC | 3 cut(s) | 44, 231, 249 |
| BsiHKAI | GWGCWC | 1 cut(s) | 166 |
| BsiHKCI | CYCGRG | 1 cut(s) | 239 |
| BsiSI | CCGG | 3 cut(s) | 179, 232, 240 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 245, 274, 317 |
| BsmAI | GTCTC | 2 cut(s) | 56, 246 |
| BsnI | GGCC | 3 cut(s) | 44, 231, 249 |
| Bso31I | GGTCTC | 1 cut(s) | 56 |
| BsoBI | CYCGRG | 1 cut(s) | 239 |
| Bsp1286I | GDGCHC | 1 cut(s) | 166 |
| Bsp143I | GATC | 3 cut(s) | 57, 69, 100 |
| BspACI | CCGC | 5 cut(s) | 260, 278, 283, 289, 321 |
| BspANI | GGCC | 3 cut(s) | 44, 231, 249 |
| BspCNI | CTCAG | 1 cut(s) | 200 |
| BspPI | GGATC | 2 cut(s) | 65, 108 |
| BspTNI | GGTCTC | 1 cut(s) | 56 |
| BsrBI | CCGCTC | 2 cut(s) | 262, 283 |
| BssECI | CCNNGG | 2 cut(s) | 52, 239 |
| BssMI | GATC | 3 cut(s) | 57, 69, 100 |
| Bst4CI | ACNGT | 1 cut(s) | 92 |
| Bst6I | CTCTTC | 1 cut(s) | 90 |
| BstBAI | YACGTR | 1 cut(s) | 271 |
| BstDEI | CTNAG | 1 cut(s) | 187 |
| BstDSI | CCRYGG | 1 cut(s) | 52 |
| BstF5I | GGATG | 1 cut(s) | 75 |
| BstH2I | RGCGCY | 1 cut(s) | 218 |
| BstHHI | GCGC | 1 cut(s) | 217 |
| BstKTI | GATC | 3 cut(s) | 60, 72, 103 |
| BstMAI | GTCTC | 2 cut(s) | 56, 246 |
| BstMBI | GATC | 3 cut(s) | 57, 69, 100 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 41 |
| BstNSI | RCATGY | 1 cut(s) | 134 |
| BstSCI | CCNGG | 3 cut(s) | 177, 238, 239 |
| BstV1I | GCAGC | 2 cut(s) | 298, 374 |
| BsuRI | GGCC | 3 cut(s) | 44, 231, 249 |
| BtgI | CCRYGG | 1 cut(s) | 52 |
| BtsCI | GGATG | 1 cut(s) | 75 |
| CaiI | CAGNNNCTG | 1 cut(s) | 194 |
| CfoI | GCGC | 1 cut(s) | 217 |
| Cfr13I | GGNCC | 3 cut(s) | 43, 229, 247 |
| Cfr9I | CCCGGG | 1 cut(s) | 239 |
| CviAII | CATG | 1 cut(s) | 131 |
| CviJI | RGCY | 9 cut(s) | 35, 44, 108, 164, 231, 244, 249, 301, 385 |
| CviKI_1 | RGCY | 9 cut(s) | 35, 44, 108, 164, 231, 244, 249, 301, 385 |
| DdeI | CTNAG | 1 cut(s) | 187 |
| DpnI | GATC | 3 cut(s) | 59, 71, 102 |
| DpnII | GATC | 3 cut(s) | 57, 69, 100 |
| Eam1104I | CTCTTC | 1 cut(s) | 90 |
| EarI | CTCTTC | 1 cut(s) | 90 |
| EciI | GGCGGA | 1 cut(s) | 293 |
| Ecl136II | GAGCTC | 1 cut(s) | 164 |
| Eco24I | GRGCYC | 1 cut(s) | 166 |
| Eco31I | GGTCTC | 1 cut(s) | 56 |
| Eco53kI | GAGCTC | 1 cut(s) | 164 |
| Eco72I | CACGTG | 1 cut(s) | 271 |
| Eco88I | CYCGRG | 1 cut(s) | 239 |
| EcoICRI | GAGCTC | 1 cut(s) | 164 |
| EcoT38I | GRGCYC | 1 cut(s) | 166 |
| FaeI | CATG | 1 cut(s) | 134 |
| FaiI | YATR | 2 cut(s) | 114, 132 |
| FatI | CATG | 1 cut(s) | 130 |
| Fnu4HI | GCNGC | 4 cut(s) | 260, 284, 287, 363 |
| FokI | GGATG | 1 cut(s) | 62 |
| FriOI | GRGCYC | 1 cut(s) | 166 |
| Fsp4HI | GCNGC | 4 cut(s) | 260, 284, 287, 363 |
| GlaI | GCGC | 1 cut(s) | 216 |
| GluI | GCNGC | 4 cut(s) | 260, 284, 287, 363 |
| GsaI | CCCAGC | 1 cut(s) | 248 |
| HaeII | RGCGCY | 1 cut(s) | 218 |
| HaeIII | GGCC | 3 cut(s) | 44, 231, 249 |
| HapII | CCGG | 3 cut(s) | 179, 232, 240 |
| HhaI | GCGC | 1 cut(s) | 217 |
| Hin1II | CATG | 1 cut(s) | 134 |
| Hin6I | GCGC | 1 cut(s) | 215 |
| HinP1I | GCGC | 1 cut(s) | 215 |
| HinfI | GANTC | 2 cut(s) | 5, 191 |
| HpaII | CCGG | 3 cut(s) | 179, 232, 240 |
| HphI | GGTGA | 4 cut(s) | 104, 295, 300, 364 |
| Hpy188I | TCNGA | 4 cut(s) | 88, 168, 190, 196 |
| Hpy188III | TCNNGA | 1 cut(s) | 61 |
| Hpy99I | CGWCG | 1 cut(s) | 92 |
| HpyAV | CCTTC | 1 cut(s) | 352 |
| HpyCH4III | ACNGT | 1 cut(s) | 92 |
| HpyCH4IV | ACGT | 1 cut(s) | 270 |
| HpyCH4V | TGCA | 1 cut(s) | 75 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 41 |
| HpyF3I | CTNAG | 1 cut(s) | 187 |
| HpySE526I | ACGT | 1 cut(s) | 270 |
| Hsp92II | CATG | 1 cut(s) | 134 |
| HspAI | GCGC | 1 cut(s) | 215 |
| Kzo9I | GATC | 3 cut(s) | 57, 69, 100 |
| LmnI | GCTCC | 2 cut(s) | 169, 280 |
| LpnPI | CCDG | 6 cut(s) | 192, 212, 215, 230, 245, 253 |
| Lsp1109I | GCAGC | 2 cut(s) | 298, 374 |
| LweI | GCATC | 1 cut(s) | 84 |
| MaeII | ACGT | 1 cut(s) | 270 |
| MalI | GATC | 3 cut(s) | 59, 71, 102 |
| MbiI | CCGCTC | 2 cut(s) | 262, 283 |
| MboI | GATC | 3 cut(s) | 57, 69, 100 |
| MboII | GAAGA | 4 cut(s) | 107, 163, 166, 232 |
| MhlI | GDGCHC | 1 cut(s) | 166 |
| MmeI | TCCRAC | 2 cut(s) | 111, 348 |
| MspA1I | CMGCKG | 1 cut(s) | 289 |
| MspI | CCGG | 3 cut(s) | 179, 232, 240 |
| MspR9I | CCNGG | 3 cut(s) | 179, 240, 241 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 41 |
| NciI | CCSGG | 3 cut(s) | 179, 240, 241 |
| NdeII | GATC | 3 cut(s) | 57, 69, 100 |
| NlaIII | CATG | 1 cut(s) | 134 |
| NmeAIII | GCCGAG | 1 cut(s) | 275 |
| NspI | RCATGY | 1 cut(s) | 134 |
| PciI | ACATGT | 1 cut(s) | 130 |
| PfeI | GAWTC | 2 cut(s) | 5, 191 |
| PkrI | GCNGC | 4 cut(s) | 261, 285, 288, 364 |
| PmaCI | CACGTG | 1 cut(s) | 271 |
| PmlI | CACGTG | 1 cut(s) | 271 |
| Ppu21I | YACGTR | 1 cut(s) | 271 |
| PscI | ACATGT | 1 cut(s) | 130 |
| Psp124BI | GAGCTC | 1 cut(s) | 166 |
| PspCI | CACGTG | 1 cut(s) | 271 |
| PspFI | CCCAGC | 1 cut(s) | 244 |
| PspPI | GGNCC | 3 cut(s) | 43, 229, 247 |
| PstNI | CAGNNNCTG | 1 cut(s) | 194 |
| SacI | GAGCTC | 1 cut(s) | 166 |
| SatI | GCNGC | 4 cut(s) | 260, 284, 287, 363 |
| Sau3AI | GATC | 3 cut(s) | 57, 69, 100 |
| Sau96I | GGNCC | 3 cut(s) | 43, 229, 247 |
| ScrFI | CCNGG | 3 cut(s) | 179, 240, 241 |
| SduI | GDGCHC | 1 cut(s) | 166 |
| SetI | ASST | 8 cut(s) | 68, 110, 166, 273, 303, 308, 313, 354 |
| SfaNI | GCATC | 1 cut(s) | 84 |
| SmaI | CCCGGG | 1 cut(s) | 241 |
| SsiI | CCGC | 5 cut(s) | 260, 278, 283, 289, 321 |
| SstI | GAGCTC | 1 cut(s) | 166 |
| StyD4I | CCNGG | 3 cut(s) | 177, 238, 239 |
| TaaI | ACNGT | 1 cut(s) | 92 |
| TaiI | ACGT | 1 cut(s) | 273 |
| TaqI | TCGA | 2 cut(s) | 60, 387 |
| TauI | GCSGC | 2 cut(s) | 262, 286 |
| TfiI | GAWTC | 2 cut(s) | 5, 191 |
| TseI | GCWGC | 2 cut(s) | 286, 362 |
| TspDTI | ATGAA | 1 cut(s) | 221 |
| TspMI | CCCGGG | 1 cut(s) | 239 |
| XceI | RCATGY | 1 cut(s) | 134 |
| XmaI | CCCGGG | 1 cut(s) | 239 |