Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006836.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Forward (+)

50008 .. 50382

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006836.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atgggttcctgtggtttgatcagagagaactgggggttgatccaacaagccaagtcgttgttcgggtcggatcagcctgacccggaaacaagaccgctcgagttcatcaaccggaacttctccatttttgacatcggcatcattgccggcttgcaaaaagaggatcacaactcgtacaatgacgacaagaaacatgtttttggttctagcaagaagaagaacggagctccgaacccaaacccggactttgcagattccgactgccagatgaaaagagcgccgaagaaacggggccggaaacccaggctgggccgagacacatcgctcaaccacgtggagacggagcggcagcggcgggagaagctcacctcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

124

Amino Acids

14.11

Weight (kDa)

9.55

Isoelectric Point (pI)

32.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	97, 346
AciI	CCGC	4 cut(s)	95, 346, 352, 355
AclWI	GGATC	3 cut(s)	34, 78, 171
AcvI	CACGTG	1 cut(s)	334
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	241, 308
AflIII	ACRYGT	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	302
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	2 cut(s)	227, 364
AluI	AGCT	2 cut(s)	227, 364
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	2 cut(s)	309, 332
AlwI	GGATC	3 cut(s)	34, 78, 171
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	2 cut(s)	292, 310
ApeKI	GCWGC	1 cut(s)	349
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	2 cut(s)	292, 310
AsuC2I	CCSGG	2 cut(s)	83, 242
AsuHPI	GGTGA	1 cut(s)	358
AvaI	CYCGRG	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	229
BbrPI	CACGTG	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	361
BciT130I	CCWGG	1 cut(s)	304
BclI	TGATCA	1 cut(s)	18
BcnI	CCSGG	2 cut(s)	83, 242
BcoDI	GTCTC	2 cut(s)	309, 332
BfaI	CTAG	1 cut(s)	207
BfoI	RGCGCY	1 cut(s)	281
BisI	GCNGC	3 cut(s)	347, 350, 353
BlsI	GCNGC	3 cut(s)	348, 351, 354
Bme1390I	CCNGG	3 cut(s)	83, 242, 304
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	292, 310
BmiI	GGNNCC	2 cut(s)	7, 293
BmrFI	CCNGG	3 cut(s)	83, 242, 304
BmrI	ACTGGG	1 cut(s)	40
BmsI	GCATC	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	40
BpuMI	CCSGG	2 cut(s)	83, 242
BsaAI	YACGTR	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	302
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 308
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	35
Bse3DI	GCAATG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	302
BseLI	CCNNNNNNNGG	2 cut(s)	241, 308
BseMI	GCAATG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	361
BseYI	CCCAGC	1 cut(s)	307
BshFI	GGCC	2 cut(s)	294, 312
BsiHKAI	GWGCWC	1 cut(s)	229
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	5 cut(s)	83, 112, 147, 242, 295
BslI	CCNNNNNNNGG	2 cut(s)	241, 308
BsmAI	GTCTC	2 cut(s)	309, 332
BsmBI	CGTCTC	1 cut(s)	332
BsnI	GGCC	2 cut(s)	294, 312
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	4 cut(s)	18, 39, 70, 163
BspACI	CCGC	4 cut(s)	95, 346, 352, 355
BspANI	GGCC	2 cut(s)	294, 312
BspLI	GGNNCC	2 cut(s)	7, 293
BspPI	GGATC	3 cut(s)	34, 78, 171
BsrBI	CCGCTC	2 cut(s)	97, 346
BsrDI	GCAATG	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	4 cut(s)	18, 39, 70, 163
Bst2UI	CCWGG	1 cut(s)	304
BstBAI	YACGTR	1 cut(s)	334
BstC8I	GCNNGC	2 cut(s)	148, 152
BstH2I	RGCGCY	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	4 cut(s)	21, 42, 73, 166
BstMAI	GTCTC	2 cut(s)	309, 332
BstMBI	GATC	4 cut(s)	18, 39, 70, 163
BstMWI	GCNNNNNNNGC	2 cut(s)	352, 361
BstNI	CCWGG	1 cut(s)	304
BstNSI	RCATGY	1 cut(s)	197
BstSCI	CCNGG	3 cut(s)	81, 240, 302
BstV1I	GCAGC	1 cut(s)	361
BsuRI	GGCC	2 cut(s)	294, 312
BtgZI	GCGATG	1 cut(s)	306
Cac8I	GCNNGC	2 cut(s)	148, 152
CfoI	GCGC	1 cut(s)	280
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	292, 310
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	8 cut(s)	50, 76, 150, 227, 294, 307, 312, 364
CviKI_1	RGCY	8 cut(s)	50, 76, 150, 227, 294, 307, 312, 364
CviQI	GTAC	1 cut(s)	175
DpnI	GATC	4 cut(s)	20, 41, 72, 165
DpnII	GATC	4 cut(s)	18, 39, 70, 163
Ecl136II	GAGCTC	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	227
Eco72I	CACGTG	1 cut(s)	334
Eco88I	CYCGRG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	229
Esp3I	CGTCTC	1 cut(s)	332
FaeI	CATG	1 cut(s)	197
FaiI	YATR	1 cut(s)	195
FatI	CATG	1 cut(s)	193
FauI	CCCGC	1 cut(s)	348
FbaI	TGATCA	1 cut(s)	18
Fnu4HI	GCNGC	3 cut(s)	347, 350, 353
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	3 cut(s)	347, 350, 353
FspBI	CTAG	1 cut(s)	207
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	3 cut(s)	347, 350, 353
GsaI	CCCAGC	1 cut(s)	311
HaeII	RGCGCY	1 cut(s)	281
HaeIII	GGCC	2 cut(s)	294, 312
HapII	CCGG	5 cut(s)	83, 112, 147, 242, 295
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	1 cut(s)	197
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	5 cut(s)	83, 112, 147, 242, 295
HphI	GGTGA	1 cut(s)	358
Hpy188I	TCNGA	4 cut(s)	23, 70, 231, 259
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	2 cut(s)	154, 251
HpyF10VI	GCNNNNNNNGC	2 cut(s)	352, 361
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	197
HspAI	GCGC	1 cut(s)	278
KroI	GCCGGC	1 cut(s)	146
KroNI	GCCGGC	1 cut(s)	148
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	4 cut(s)	18, 39, 70, 163
LmnI	GCTCC	3 cut(s)	224, 232, 343
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	1 cut(s)	333
MalI	GATC	4 cut(s)	20, 41, 72, 165
MbiI	CCGCTC	2 cut(s)	97, 346
MboI	GATC	4 cut(s)	18, 39, 70, 163
MboII	GAAGA	3 cut(s)	226, 229, 295
MhlI	GDGCHC	1 cut(s)	229
MmeI	TCCRAC	3 cut(s)	48, 67, 282
MnlI	CCTC	1 cut(s)	154
MroNI	GCCGGC	1 cut(s)	146
MseI	TTAA	1 cut(s)	373
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	5 cut(s)	83, 112, 147, 242, 295
MspR9I	CCNGG	3 cut(s)	83, 242, 304
MvaI	CCWGG	1 cut(s)	304
MwoI	GCNNNNNNNGC	2 cut(s)	352, 361
NaeI	GCCGGC	1 cut(s)	148
NciI	CCSGG	2 cut(s)	83, 242
NdeII	GATC	4 cut(s)	18, 39, 70, 163
NgoMIV	GCCGGC	1 cut(s)	146
NlaIII	CATG	1 cut(s)	197
NlaIV	GGNNCC	2 cut(s)	7, 293
NmeAIII	GCCGAG	1 cut(s)	338
NspI	RCATGY	1 cut(s)	197
PaeR7I	CTCGAG	1 cut(s)	98
PciI	ACATGT	1 cut(s)	193
PdiI	GCCGGC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	3 cut(s)	348, 351, 354
PmaCI	CACGTG	1 cut(s)	334
PmlI	CACGTG	1 cut(s)	334
Ppu21I	YACGTR	1 cut(s)	334
PscI	ACATGT	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	302
PspCI	CACGTG	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	302
PspN4I	GGNNCC	2 cut(s)	7, 293
PspPI	GGNCC	2 cut(s)	292, 310
PspXI	VCTCGAGB	1 cut(s)	98
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	373
SatI	GCNGC	3 cut(s)	347, 350, 353
Sau3AI	GATC	4 cut(s)	18, 39, 70, 163
Sau96I	GGNCC	2 cut(s)	292, 310
ScrFI	CCNGG	3 cut(s)	83, 242, 304
SduI	GDGCHC	1 cut(s)	229
SetI	ASST	4 cut(s)	229, 336, 366, 371
SfaNI	GCATC	1 cut(s)	147
Sfr274I	CTCGAG	1 cut(s)	98
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
SsiI	CCGC	4 cut(s)	95, 346, 352, 355
SspMI	CTAG	1 cut(s)	207
SstI	GAGCTC	1 cut(s)	229
StyD4I	CCNGG	3 cut(s)	81, 240, 302
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	1 cut(s)	99
TauI	GCSGC	2 cut(s)	349, 355
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	373
Tru9I	TTAA	1 cut(s)	373
TseI	GCWGC	1 cut(s)	349
TspDTI	ATGAA	2 cut(s)	94, 284
TspGWI	ACGGA	2 cut(s)	237, 356
XceI	RCATGY	1 cut(s)	197
XhoI	CTCGAG	1 cut(s)	98
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.