Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003197.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Reverse (-)

23753 .. 24229

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003197.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgggttcctccggtttgatcagagagaactcggggttgatccagcaagccaagtcgttgtttgggtcggatcagcccgactcgaaaacaagaccgctcgagttcatcaaccggaacttctccatttttgacatcggcatcattgtcggcgtgcaggaagaggatcacagctcgtacaatgacgacaagaaacatgtttttggttctagcaagaagaagaacggagctccaaacccaaacccaaacccgaacttcgcagattccgactgccaaatgaaaagagcgccgaagaaacagggcaggaaacccgggctgggccgagacacgccgctcaaccacgtggaggcggagcggcagcggtgggagaaactcacctcgcaagggcggcgttggaagcgagagagtgagcgtggaggtgaggaaggcggagttggaagcgagggagtgagcccggaagaaggaagaagaaagagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

158

Amino Acids

17.65

Weight (kDa)

9.58

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	97, 331, 352
AciI	CCGC	7 cut(s)	95, 329, 347, 352, 358, 385, 426
AclWI	GGATC	3 cut(s)	34, 78, 171
AcvI	CACGTG	1 cut(s)	340
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	4 cut(s)	314, 343, 381, 458
AflIII	ACRYGT	1 cut(s)	193
AjuI	GAANNNNNNNTTGG	2 cut(s)	414, 446
AluBI	AGCT	2 cut(s)	171, 227
AluI	AGCT	2 cut(s)	171, 227
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	3 cut(s)	34, 78, 171
Ama87I	CYCGRG	3 cut(s)	31, 98, 308
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	355
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	316
AsuC2I	CCSGG	3 cut(s)	309, 310, 452
AsuHPI	GGTGA	2 cut(s)	364, 428
AvaI	CYCGRG	3 cut(s)	31, 98, 308
BanII	GRGCYC	2 cut(s)	229, 452
BbrPI	CACGTG	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	367
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BclI	TGATCA	1 cut(s)	18
BcnI	CCSGG	3 cut(s)	309, 310, 452
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	1 cut(s)	207
BfoI	RGCGCY	1 cut(s)	287
BisI	GCNGC	4 cut(s)	329, 353, 356, 386
BlsI	GCNGC	4 cut(s)	330, 354, 357, 387
Bme1390I	CCNGG	3 cut(s)	309, 310, 452
BmeT110I	CYCGRG	3 cut(s)	31, 98, 308
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	3 cut(s)	309, 310, 452
BmsI	GCATC	1 cut(s)	147
BpuMI	CCSGG	3 cut(s)	309, 310, 452
BsaAI	YACGTR	1 cut(s)	340
BsaJI	CCNNGG	1 cut(s)	308
BsaWI	WCCGGW	2 cut(s)	11, 111
Bsc4I	CCNNNNNNNGG	4 cut(s)	314, 343, 381, 458
BseDI	CCNNGG	1 cut(s)	308
BseLI	CCNNNNNNNGG	4 cut(s)	314, 343, 381, 458
BseXI	GCAGC	1 cut(s)	367
BseYI	CCCAGC	1 cut(s)	313
BsgI	GTGCAG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	229
BsiHKCI	CYCGRG	3 cut(s)	31, 98, 308
BsiSI	CCGG	4 cut(s)	12, 112, 309, 452
BslI	CCNNNNNNNGG	4 cut(s)	314, 343, 381, 458
BsmAI	GTCTC	1 cut(s)	315
BsnI	GGCC	1 cut(s)	318
BsoBI	CYCGRG	3 cut(s)	31, 98, 308
Bsp1286I	GDGCHC	2 cut(s)	229, 452
Bsp143I	GATC	4 cut(s)	18, 39, 70, 163
BspACI	CCGC	7 cut(s)	95, 329, 347, 352, 358, 385, 426
BspANI	GGCC	1 cut(s)	318
BspLI	GGNNCC	1 cut(s)	7
BspPI	GGATC	3 cut(s)	34, 78, 171
BsrBI	CCGCTC	3 cut(s)	97, 331, 352
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	4 cut(s)	18, 39, 70, 163
Bst6I	CTCTTC	1 cut(s)	153
BstBAI	YACGTR	1 cut(s)	340
BstC8I	GCNNGC	2 cut(s)	48, 152
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	4 cut(s)	21, 42, 73, 166
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	4 cut(s)	18, 39, 70, 163
BstMWI	GCNNNNNNNGC	2 cut(s)	385, 394
BstNSI	RCATGY	1 cut(s)	197
BstSCI	CCNGG	3 cut(s)	307, 308, 450
BstV1I	GCAGC	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	318
Cac8I	GCNNGC	2 cut(s)	48, 152
CfoI	GCGC	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	316
Cfr9I	CCCGGG	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	7 cut(s)	50, 76, 171, 227, 313, 318, 450
CviKI_1	RGCY	7 cut(s)	50, 76, 171, 227, 313, 318, 450
CviQI	GTAC	1 cut(s)	175
DpnI	GATC	4 cut(s)	20, 41, 72, 165
DpnII	GATC	4 cut(s)	18, 39, 70, 163
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EciI	GGCGGA	2 cut(s)	362, 441
Ecl136II	GAGCTC	1 cut(s)	227
Eco24I	GRGCYC	2 cut(s)	229, 452
Eco53kI	GAGCTC	1 cut(s)	227
Eco72I	CACGTG	1 cut(s)	340
Eco88I	CYCGRG	3 cut(s)	31, 98, 308
EcoICRI	GAGCTC	1 cut(s)	227
EcoT38I	GRGCYC	2 cut(s)	229, 452
FaeI	CATG	1 cut(s)	197
FaiI	YATR	1 cut(s)	195
FatI	CATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	18
Fnu4HI	GCNGC	4 cut(s)	329, 353, 356, 386
FriOI	GRGCYC	2 cut(s)	229, 452
Fsp4HI	GCNGC	4 cut(s)	329, 353, 356, 386
FspBI	CTAG	1 cut(s)	207
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	4 cut(s)	329, 353, 356, 386
GsaI	CCCAGC	1 cut(s)	317
HaeII	RGCGCY	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	4 cut(s)	12, 112, 309, 452
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	1 cut(s)	197
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HinfI	GANTC	2 cut(s)	80, 260
HpaII	CCGG	4 cut(s)	12, 112, 309, 452
HphI	GGTGA	2 cut(s)	364, 428
Hpy188I	TCNGA	3 cut(s)	23, 70, 265
HpyAV	CCTTC	2 cut(s)	416, 452
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	385, 394
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	1 cut(s)	197
HspAI	GCGC	1 cut(s)	284
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	4 cut(s)	18, 39, 70, 163
LmnI	GCTCC	3 cut(s)	224, 232, 349
LpnPI	CCDG	9 cut(s)	25, 56, 125, 140, 281, 286, 299, 322, 465
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	1 cut(s)	339
MalI	GATC	4 cut(s)	20, 41, 72, 165
MbiI	CCGCTC	3 cut(s)	97, 331, 352
MboI	GATC	4 cut(s)	18, 39, 70, 163
MboII	GAAGA	7 cut(s)	170, 226, 229, 301, 467, 474, 477
MhlI	GDGCHC	2 cut(s)	229, 452
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	4 cut(s)	48, 288, 371, 412
MnlI	CCTC	7 cut(s)	19, 154, 337, 385, 407, 412, 433
MspA1I	CMGCKG	1 cut(s)	358
MspI	CCGG	4 cut(s)	12, 112, 309, 452
MspR9I	CCNGG	3 cut(s)	309, 310, 452
MwoI	GCNNNNNNNGC	2 cut(s)	385, 394
NciI	CCSGG	3 cut(s)	309, 310, 452
NdeII	GATC	4 cut(s)	18, 39, 70, 163
NlaIII	CATG	1 cut(s)	197
NlaIV	GGNNCC	1 cut(s)	7
NmeAIII	GCCGAG	1 cut(s)	344
NspI	RCATGY	1 cut(s)	197
PaeR7I	CTCGAG	1 cut(s)	98
PciI	ACATGT	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	4 cut(s)	330, 354, 357, 387
PleI	GAGTC	1 cut(s)	74
PmaCI	CACGTG	1 cut(s)	340
PmlI	CACGTG	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	74
Ppu21I	YACGTR	1 cut(s)	340
PscI	ACATGT	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	229
PspCI	CACGTG	1 cut(s)	340
PspFI	CCCAGC	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	316
PspXI	VCTCGAGB	1 cut(s)	98
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	229
SatI	GCNGC	4 cut(s)	329, 353, 356, 386
Sau3AI	GATC	4 cut(s)	18, 39, 70, 163
Sau96I	GGNCC	1 cut(s)	316
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	3 cut(s)	309, 310, 452
SduI	GDGCHC	2 cut(s)	229, 452
SetI	ASST	5 cut(s)	173, 229, 342, 377, 418
SfaNI	GCATC	1 cut(s)	147
Sfr274I	CTCGAG	1 cut(s)	98
SlaI	CTCGAG	1 cut(s)	98
SmaI	CCCGGG	1 cut(s)	310
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
SsiI	CCGC	7 cut(s)	95, 329, 347, 352, 358, 385, 426
SspMI	CTAG	1 cut(s)	207
SstI	GAGCTC	1 cut(s)	229
StyD4I	CCNGG	3 cut(s)	307, 308, 450
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	2 cut(s)	83, 99
TauI	GCSGC	3 cut(s)	331, 355, 388
TfiI	GAWTC	1 cut(s)	260
TseI	GCWGC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	94, 290
TspGWI	ACGGA	1 cut(s)	237
TspMI	CCCGGG	1 cut(s)	308
XceI	RCATGY	1 cut(s)	197
XhoI	CTCGAG	1 cut(s)	98
XmaI	CCCGGG	1 cut(s)	308
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.