Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000141.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Reverse (-)

28736 .. 29662

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000141.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atgtggtttcgcttcgattggcgccactttggggactttagttcaaaacgggggtttcgaattgggaaaatttcgcaaacagccttcggctccgggacctcaatctggctgagcgggacccacgagcttcagtttaacaactgcgagagagccaaagcggcccaaatccacaggatcgagatattgatctgcatcccaacttccgacgatgttcttgaaatgggttcctccggtttgatcagagagaactgggggttaatccagcaagccaagtcgttgtttgggtcggatcagcccaacccggaaacaagaccactcgagttcatcaaccggaacttctccatttttgacatcggcatcattgcaggcgtgcaggaagaggatcacagctcgtacaatgacgacaagaaacatgtttttcgttctagcaagaagaagaaaggagctccgaacccaaacccagacttcacagattccaactgccagatgaaaagagcccgaagaaacgctgtcgaaaacccacgctgggctgagacacgccgctcaaccacatggaggcgaagcggcagcggtgggagaagctcacctcgcaagggaggcgttggaagtaagggagtgagcgtggaggtgaggaaggcggcattggaagcgagggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

219

Amino Acids

24.75

Weight (kDa)

9.95

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	21
AccBSI	CCGCTC	2 cut(s)	114, 543
AciI	CCGC	6 cut(s)	114, 158, 541, 564, 570, 638
AclWI	GGATC	3 cut(s)	182, 297, 390
AcsI	RAATTY	1 cut(s)	69
AcuI	CTGAAG	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	22
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	5 cut(s)	31, 105, 526, 555, 593
AflIII	ACRYGT	1 cut(s)	412
AgsI	TTSAA	2 cut(s)	45, 218
AjuI	GAANNNNNNNTTGG	2 cut(s)	626, 658
AluBI	AGCT	4 cut(s)	127, 390, 446, 582
AluI	AGCT	4 cut(s)	127, 390, 446, 582
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	1 cut(s)	527
AlwI	GGATC	3 cut(s)	182, 297, 390
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	567
ApoI	RAATTY	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	3 cut(s)	96, 117, 160
AsuC2I	CCSGG	2 cut(s)	94, 302
AsuHPI	GGTGA	2 cut(s)	576, 640
AsuII	TTCGAA	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	2 cut(s)	96, 117
BanI	GGYRCC	1 cut(s)	21
BanII	GRGCYC	2 cut(s)	448, 499
BauI	CACGAG	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	1 cut(s)	579
BclI	TGATCA	1 cut(s)	237
BcnI	CCSGG	2 cut(s)	94, 302
BcoDI	GTCTC	1 cut(s)	527
BfaI	CTAG	1 cut(s)	426
BfoI	RGCGCY	1 cut(s)	25
BglI	GCCNNNNNGGC	1 cut(s)	158
BisI	GCNGC	5 cut(s)	159, 541, 565, 568, 639
BlpI	GCTNAGC	1 cut(s)	110
BlsI	GCNGC	5 cut(s)	160, 542, 566, 569, 640
Bme1390I	CCNGG	2 cut(s)	94, 302
Bme18I	GGWCC	2 cut(s)	96, 117
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	3 cut(s)	96, 117, 160
BmiI	GGNNCC	6 cut(s)	23, 91, 97, 118, 119, 226
BmrFI	CCNGG	2 cut(s)	94, 302
BmrI	ACTGGG	1 cut(s)	259
BmsI	GCATC	2 cut(s)	201, 366
BmuI	ACTGGG	1 cut(s)	259
Bpu1102I	GCTNAGC	1 cut(s)	110
Bpu14I	TTCGAA	1 cut(s)	58
BpuMI	CCSGG	2 cut(s)	94, 302
BsaBI	GATNNNNATC	2 cut(s)	185, 191
BsaHI	GRCGYC	1 cut(s)	22
BsaWI	WCCGGW	2 cut(s)	230, 330
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	5 cut(s)	31, 105, 526, 555, 593
Bse1I	ACTGG	1 cut(s)	254
Bse3DI	GCAATG	1 cut(s)	360
Bse8I	GATNNNNATC	2 cut(s)	185, 191
BseGI	GGATG	1 cut(s)	192
BseJI	GATNNNNATC	2 cut(s)	185, 191
BseLI	CCNNNNNNNGG	5 cut(s)	31, 105, 526, 555, 593
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	2 cut(s)	101, 522
BseNI	ACTGG	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	579
BseYI	CCCAGC	1 cut(s)	525
BsgI	GTGCAG	1 cut(s)	392
BshFI	GGCC	1 cut(s)	161
BshNI	GGYRCC	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	448
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	4 cut(s)	93, 231, 302, 331
BslFI	GGGAC	3 cut(s)	47, 109, 130
BslI	CCNNNNNNNGG	5 cut(s)	31, 105, 526, 555, 593
BsmAI	GTCTC	1 cut(s)	527
BsmFI	GGGAC	3 cut(s)	47, 109, 130
BsnI	GGCC	1 cut(s)	161
BsoBI	CYCGRG	1 cut(s)	317
Bsp119I	TTCGAA	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	448, 499
Bsp143I	GATC	5 cut(s)	174, 186, 237, 289, 382
Bsp1720I	GCTNAGC	1 cut(s)	110
BspACI	CCGC	6 cut(s)	114, 158, 541, 564, 570, 638
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	2 cut(s)	102, 523
BspLI	GGNNCC	6 cut(s)	23, 91, 97, 118, 119, 226
BspPI	GGATC	3 cut(s)	182, 297, 390
BspT104I	TTCGAA	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	21
BsrBI	CCGCTC	2 cut(s)	114, 543
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	254
BssMI	GATC	5 cut(s)	174, 186, 237, 289, 382
BssNI	GRCGYC	1 cut(s)	22
BssSI	CACGAG	1 cut(s)	122
Bst2BI	CACGAG	1 cut(s)	122
Bst6I	CTCTTC	1 cut(s)	372
BstACI	GRCGYC	1 cut(s)	22
BstBI	TTCGAA	1 cut(s)	58
BstC8I	GCNNGC	3 cut(s)	267, 367, 371
BstDEI	CTNAG	2 cut(s)	110, 531
BstF5I	GGATG	1 cut(s)	192
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	5 cut(s)	177, 189, 240, 292, 385
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	5 cut(s)	174, 186, 237, 289, 382
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 588, 597, 647
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	92, 300
BstV1I	GCAGC	1 cut(s)	579
BsuRI	GGCC	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	192
Cac8I	GCNNGC	3 cut(s)	267, 367, 371
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	3 cut(s)	96, 117, 160
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	2 cut(s)	413, 552
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	2 cut(s)	110, 531
DinI	GGCGCC	1 cut(s)	23
DpnI	GATC	5 cut(s)	176, 188, 239, 291, 384
DpnII	GATC	5 cut(s)	174, 186, 237, 289, 382
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Ecl136II	GAGCTC	1 cut(s)	446
Eco24I	GRGCYC	2 cut(s)	448, 499
Eco47I	GGWCC	2 cut(s)	96, 117
Eco53kI	GAGCTC	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	113
Eco88I	CYCGRG	1 cut(s)	317
EcoICRI	GAGCTC	1 cut(s)	446
EcoO109I	RGGNCCY	2 cut(s)	96, 117
EcoT38I	GRGCYC	2 cut(s)	448, 499
EgeI	GGCGCC	1 cut(s)	23
EheI	GGCGCC	1 cut(s)	23
FaeI	CATG	2 cut(s)	416, 555
FaiI	YATR	2 cut(s)	414, 553
FaqI	GGGAC	3 cut(s)	47, 109, 130
FatI	CATG	2 cut(s)	412, 551
FauI	CCCGC	1 cut(s)	107
FbaI	TGATCA	1 cut(s)	237
Fnu4HI	GCNGC	5 cut(s)	159, 541, 565, 568, 639
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	2 cut(s)	448, 499
Fsp4HI	GCNGC	5 cut(s)	159, 541, 565, 568, 639
FspBI	CTAG	1 cut(s)	426
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	5 cut(s)	159, 541, 565, 568, 639
GsaI	CCCAGC	1 cut(s)	529
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	4 cut(s)	93, 231, 302, 331
HhaI	GCGC	1 cut(s)	24
Hin1I	GRCGYC	1 cut(s)	22
Hin1II	CATG	2 cut(s)	416, 555
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HinfI	GANTC	1 cut(s)	473
HpaII	CCGG	4 cut(s)	93, 231, 302, 331
HphI	GGTGA	2 cut(s)	576, 640
Hpy188I	TCNGA	4 cut(s)	205, 242, 289, 450
Hpy188III	TCNNGA	2 cut(s)	178, 215
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	2 cut(s)	94, 628
HpyCH4V	TGCA	3 cut(s)	192, 365, 373
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 588, 597, 647
HpyF3I	CTNAG	2 cut(s)	110, 531
Hsp92I	GRCGYC	1 cut(s)	22
Hsp92II	CATG	2 cut(s)	416, 555
HspAI	GCGC	1 cut(s)	22
KasI	GGCGCC	1 cut(s)	21
KflI	GGGWCCC	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	5 cut(s)	174, 186, 237, 289, 382
LmnI	GCTCC	3 cut(s)	95, 443, 451
Lsp1109I	GCAGC	1 cut(s)	579
LweI	GCATC	2 cut(s)	201, 366
MaeI	CTAG	1 cut(s)	426
MalI	GATC	5 cut(s)	176, 188, 239, 291, 384
MbiI	CCGCTC	2 cut(s)	114, 543
MboI	GATC	5 cut(s)	174, 186, 237, 289, 382
MboII	GAAGA	4 cut(s)	389, 445, 448, 513
MhlI	GDGCHC	2 cut(s)	448, 499
MluCI	AATT	2 cut(s)	60, 69
Mly113I	GGCGCC	1 cut(s)	22
MmeI	TCCRAC	4 cut(s)	228, 267, 501, 583
MnlI	CCTC	9 cut(s)	109, 238, 373, 549, 590, 597, 619, 624, 645
MseI	TTAA	2 cut(s)	135, 257
MspA1I	CMGCKG	1 cut(s)	570
MspI	CCGG	4 cut(s)	93, 231, 302, 331
MspR9I	CCNGG	2 cut(s)	94, 302
MwoI	GCNNNNNNNGC	4 cut(s)	158, 588, 597, 647
NarI	GGCGCC	1 cut(s)	22
NciI	CCSGG	2 cut(s)	94, 302
NdeII	GATC	5 cut(s)	174, 186, 237, 289, 382
NlaIII	CATG	2 cut(s)	416, 555
NlaIV	GGNNCC	6 cut(s)	23, 91, 97, 118, 119, 226
NspI	RCATGY	1 cut(s)	416
NspV	TTCGAA	1 cut(s)	58
PaeR7I	CTCGAG	1 cut(s)	317
PciI	ACATGT	1 cut(s)	412
PcsI	WCGNNNNNNNCGW	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	473
PfoI	TCCNGGA	1 cut(s)	92
PkrI	GCNGC	5 cut(s)	160, 542, 566, 569, 640
PluTI	GGCGCC	1 cut(s)	25
PpuMI	RGGWCCY	2 cut(s)	96, 117
PscI	ACATGT	1 cut(s)	412
Psp124BI	GAGCTC	1 cut(s)	448
Psp5II	RGGWCCY	2 cut(s)	96, 117
PspFI	CCCAGC	1 cut(s)	525
PspN4I	GGNNCC	6 cut(s)	23, 91, 97, 118, 119, 226
PspPI	GGNCC	3 cut(s)	96, 117, 160
PspPPI	RGGWCCY	2 cut(s)	96, 117
PspXI	VCTCGAGB	1 cut(s)	317
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SacI	GAGCTC	1 cut(s)	448
SaqAI	TTAA	2 cut(s)	135, 257
SatI	GCNGC	5 cut(s)	159, 541, 565, 568, 639
Sau3AI	GATC	5 cut(s)	174, 186, 237, 289, 382
Sau96I	GGNCC	3 cut(s)	96, 117, 160
ScrFI	CCNGG	2 cut(s)	94, 302
SduI	GDGCHC	2 cut(s)	448, 499
SetI	ASST	7 cut(s)	101, 129, 392, 448, 584, 589, 630
SfaNI	GCATC	2 cut(s)	201, 366
SfoI	GGCGCC	1 cut(s)	23
Sfr274I	CTCGAG	1 cut(s)	317
SfuI	TTCGAA	1 cut(s)	58
SinI	GGWCC	2 cut(s)	96, 117
SlaI	CTCGAG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	2 cut(s)	60, 69
SsiI	CCGC	6 cut(s)	114, 158, 541, 564, 570, 638
SspDI	GGCGCC	1 cut(s)	21
SspMI	CTAG	1 cut(s)	426
SstI	GAGCTC	1 cut(s)	448
StyD4I	CCNGG	2 cut(s)	92, 300
TaqI	TCGA	5 cut(s)	15, 58, 177, 318, 513
TasI	AATT	2 cut(s)	60, 69
TauI	GCSGC	4 cut(s)	161, 543, 567, 641
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	2 cut(s)	135, 257
Tru9I	TTAA	2 cut(s)	135, 257
TseI	GCWGC	1 cut(s)	567
TspDTI	ATGAA	2 cut(s)	313, 503
VpaK11BI	GGWCC	2 cut(s)	96, 117
XapI	RAATTY	1 cut(s)	69
XceI	RCATGY	1 cut(s)	416
XhoI	CTCGAG	1 cut(s)	317
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.