Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000559.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Forward (+)

132687 .. 133446

Gene Structure 760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000559.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgtccattatgccctcagctcactccctcactcgatctttcgccgtcggggacggctctgttcccggaaaggccttcggctccgggacctcaatatggctgagcggggcccacgagcttcagttcaacaactgcaagagagccaaaaaggcccaaatccacgggatcgagaccttgatctgcatcccaacttctgacggtgttcttgaaatgggttcctccggtttgatcagagagaactggggcaagaagaaaaacggagctccgaacccaaccccggacttcacagattccaactgccagatgaaaagagcgccgaagaaacggggccggaaacccgagctgggccgagacatgctgcttaaccacgtggaggcgaagcggcagcgacgggagaagctcacctcccaagggagacgttggaagcgagggagtgagcgtggaggtgaggaaggcggcgttggaagcgagggagtgagcccggaagaaggaagaagaaagagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

168

Amino Acids

18.4

Weight (kDa)

10.28

Isoelectric Point (pI)

57.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	105
AciI	CCGC	3 cut(s)	105, 382, 456
AclWI	GGATC	1 cut(s)	173
AcuI	CTGAAG	1 cut(s)	104
AcvI	CACGTG	1 cut(s)	370
AfiI	CCNNNNNNNGG	6 cut(s)	96, 277, 344, 373, 411, 488
AgsI	TTSAA	2 cut(s)	127, 209
AjuI	GAANNNNNNNTTGG	2 cut(s)	444, 476
AluBI	AGCT	5 cut(s)	20, 118, 263, 343, 400
AluI	AGCT	5 cut(s)	20, 118, 263, 343, 400
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	3 cut(s)	164, 345, 409
AlwI	GGATC	1 cut(s)	173
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	5 cut(s)	72, 108, 150, 328, 346
ApaI	GGGCCC	1 cut(s)	112
ApeKI	GCWGC	2 cut(s)	358, 385
AspLEI	GCGC	1 cut(s)	316
AspS9I	GGNCC	6 cut(s)	87, 108, 109, 151, 328, 346
AsuC2I	CCSGG	4 cut(s)	66, 85, 278, 482
AsuHPI	GGTGA	2 cut(s)	394, 458
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	87
BaeGI	GKGCMC	1 cut(s)	112
BanII	GRGCYC	3 cut(s)	112, 265, 482
BauI	CACGAG	1 cut(s)	113
BbrPI	CACGTG	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	265
BbvCI	CCTCAGC	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	345, 397
BceAI	ACGGC	2 cut(s)	29, 70
BclI	TGATCA	1 cut(s)	228
BcnI	CCSGG	4 cut(s)	66, 85, 278, 482
BcoDI	GTCTC	3 cut(s)	164, 345, 409
BfoI	RGCGCY	1 cut(s)	317
BglI	GCCNNNNNGGC	1 cut(s)	149
BisI	GCNGC	4 cut(s)	359, 383, 386, 457
BlpI	GCTNAGC	1 cut(s)	101
BlsI	GCNGC	4 cut(s)	360, 384, 387, 458
Bme1390I	CCNGG	4 cut(s)	66, 85, 278, 482
Bme18I	GGWCC	1 cut(s)	87
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	6 cut(s)	87, 108, 109, 151, 328, 346
BmiI	GGNNCC	6 cut(s)	82, 88, 109, 110, 217, 329
BmrFI	CCNGG	4 cut(s)	66, 85, 278, 482
BmrI	ACTGGG	1 cut(s)	250
BmsI	GCATC	1 cut(s)	192
BmuI	ACTGGG	1 cut(s)	250
Bpu10I	CCTNAGC	1 cut(s)	16
Bpu1102I	GCTNAGC	1 cut(s)	101
BpuMI	CCSGG	4 cut(s)	66, 85, 278, 482
BsaAI	YACGTR	1 cut(s)	370
BsaBI	GATNNNNATC	1 cut(s)	182
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	3 cut(s)	160, 276, 409
BsaWI	WCCGGW	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	6 cut(s)	96, 277, 344, 373, 411, 488
Bse1I	ACTGG	1 cut(s)	245
Bse8I	GATNNNNATC	1 cut(s)	182
BseDI	CCNNGG	3 cut(s)	160, 276, 409
BseGI	GGATG	1 cut(s)	183
BseJI	GATNNNNATC	1 cut(s)	182
BseLI	CCNNNNNNNGG	6 cut(s)	96, 277, 344, 373, 411, 488
BseMII	CTCAG	2 cut(s)	30, 92
BseNI	ACTGG	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	345, 397
BseYI	CCCAGC	1 cut(s)	343
BshFI	GGCC	5 cut(s)	74, 110, 152, 330, 348
BsiHKAI	GWGCWC	1 cut(s)	265
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	6 cut(s)	66, 84, 222, 278, 331, 482
BslFI	GGGAC	2 cut(s)	65, 100
BslI	CCNNNNNNNGG	6 cut(s)	96, 277, 344, 373, 411, 488
BsmAI	GTCTC	3 cut(s)	164, 345, 409
BsmBI	CGTCTC	1 cut(s)	409
BsmFI	GGGAC	2 cut(s)	65, 100
BsnI	GGCC	5 cut(s)	74, 110, 152, 330, 348
Bso31I	GGTCTC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	338
Bsp120I	GGGCCC	1 cut(s)	108
Bsp1286I	GDGCHC	3 cut(s)	112, 265, 482
Bsp143I	GATC	4 cut(s)	35, 165, 177, 228
Bsp1720I	GCTNAGC	1 cut(s)	101
BspACI	CCGC	3 cut(s)	105, 382, 456
BspANI	GGCC	5 cut(s)	74, 110, 152, 330, 348
BspCNI	CTCAG	2 cut(s)	29, 93
BspLI	GGNNCC	6 cut(s)	82, 88, 109, 110, 217, 329
BspPI	GGATC	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	164
BsrBI	CCGCTC	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	3 cut(s)	160, 276, 409
BssMI	GATC	4 cut(s)	35, 165, 177, 228
BssSI	CACGAG	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	409
Bst2BI	CACGAG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	200
BstBAI	YACGTR	1 cut(s)	370
BstDEI	CTNAG	2 cut(s)	16, 101
BstDSI	CCRYGG	1 cut(s)	160
BstF5I	GGATG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	317
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	4 cut(s)	38, 168, 180, 231
BstMAI	GTCTC	3 cut(s)	164, 345, 409
BstMBI	GATC	4 cut(s)	35, 165, 177, 228
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 465
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	4 cut(s)	64, 83, 276, 480
BstSLI	GKGCMC	1 cut(s)	112
BstV1I	GCAGC	2 cut(s)	345, 397
BsuRI	GGCC	5 cut(s)	74, 110, 152, 330, 348
BtgI	CCRYGG	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	183
CfoI	GCGC	1 cut(s)	316
Cfr13I	GGNCC	6 cut(s)	87, 108, 109, 151, 328, 346
CviAII	CATG	1 cut(s)	355
DdeI	CTNAG	2 cut(s)	16, 101
DpnI	GATC	4 cut(s)	37, 167, 179, 230
DpnII	GATC	4 cut(s)	35, 165, 177, 228
Ecl136II	GAGCTC	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	409
Eco147I	AGGCCT	1 cut(s)	74
Eco24I	GRGCYC	3 cut(s)	112, 265, 482
Eco31I	GGTCTC	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	87
Eco53kI	GAGCTC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	104
Eco72I	CACGTG	1 cut(s)	370
Eco88I	CYCGRG	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	263
EcoO109I	RGGNCCY	2 cut(s)	87, 108
EcoT14I	CCWWGG	1 cut(s)	409
EcoT38I	GRGCYC	3 cut(s)	112, 265, 482
ErhI	CCWWGG	1 cut(s)	409
Esp3I	CGTCTC	1 cut(s)	409
FaeI	CATG	1 cut(s)	358
FaiI	YATR	3 cut(s)	11, 97, 356
FaqI	GGGAC	2 cut(s)	65, 100
FatI	CATG	1 cut(s)	354
FauI	CCCGC	1 cut(s)	98
FbaI	TGATCA	1 cut(s)	228
Fnu4HI	GCNGC	4 cut(s)	359, 383, 386, 457
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	3 cut(s)	112, 265, 482
Fsp4HI	GCNGC	4 cut(s)	359, 383, 386, 457
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	4 cut(s)	359, 383, 386, 457
GsaI	CCCAGC	1 cut(s)	347
HaeII	RGCGCY	1 cut(s)	317
HaeIII	GGCC	5 cut(s)	74, 110, 152, 330, 348
HapII	CCGG	6 cut(s)	66, 84, 222, 278, 331, 482
HhaI	GCGC	1 cut(s)	316
Hin1II	CATG	1 cut(s)	358
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	6 cut(s)	66, 84, 222, 278, 331, 482
HphI	GGTGA	2 cut(s)	394, 458
Hpy188I	TCNGA	3 cut(s)	196, 233, 267
Hpy188III	TCNNGA	2 cut(s)	169, 206
Hpy99I	CGWCG	2 cut(s)	50, 393
HpyAV	CCTTC	3 cut(s)	85, 446, 482
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	2 cut(s)	369, 418
HpyCH4V	TGCA	2 cut(s)	135, 183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 465
HpyF3I	CTNAG	2 cut(s)	16, 101
HpySE526I	ACGT	2 cut(s)	369, 418
Hsp92II	CATG	1 cut(s)	358
HspAI	GCGC	1 cut(s)	314
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	4 cut(s)	35, 165, 177, 228
LmnI	GCTCC	3 cut(s)	86, 260, 268
LpnPI	CCDG	9 cut(s)	79, 97, 226, 235, 291, 314, 329, 344, 495
Lsp1109I	GCAGC	2 cut(s)	345, 397
LweI	GCATC	1 cut(s)	192
MaeII	ACGT	2 cut(s)	369, 418
MalI	GATC	4 cut(s)	37, 167, 179, 230
MbiI	CCGCTC	1 cut(s)	105
MboI	GATC	4 cut(s)	35, 165, 177, 228
MboII	GAAGA	5 cut(s)	262, 331, 497, 504, 507
MhlI	GDGCHC	3 cut(s)	112, 265, 482
MmeI	TCCRAC	3 cut(s)	318, 401, 442
MseI	TTAA	1 cut(s)	363
MspI	CCGG	6 cut(s)	66, 84, 222, 278, 331, 482
MspR9I	CCNGG	4 cut(s)	66, 85, 278, 482
MwoI	GCNNNNNNNGC	2 cut(s)	149, 465
NciI	CCSGG	4 cut(s)	66, 85, 278, 482
NdeII	GATC	4 cut(s)	35, 165, 177, 228
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	6 cut(s)	82, 88, 109, 110, 217, 329
NmeAIII	GCCGAG	1 cut(s)	374
NspI	RCATGY	1 cut(s)	358
PceI	AGGCCT	1 cut(s)	74
PcsI	WCGNNNNNNNCGW	1 cut(s)	424
PfeI	GAWTC	1 cut(s)	290
PfoI	TCCNGGA	2 cut(s)	64, 83
PkrI	GCNGC	4 cut(s)	360, 384, 387, 458
PmaCI	CACGTG	1 cut(s)	370
PmlI	CACGTG	1 cut(s)	370
Ppu21I	YACGTR	1 cut(s)	370
PpuMI	RGGWCCY	1 cut(s)	87
Psp124BI	GAGCTC	1 cut(s)	265
Psp5II	RGGWCCY	1 cut(s)	87
PspCI	CACGTG	1 cut(s)	370
PspFI	CCCAGC	1 cut(s)	343
PspN4I	GGNNCC	6 cut(s)	82, 88, 109, 110, 217, 329
PspOMI	GGGCCC	1 cut(s)	108
PspPI	GGNCC	6 cut(s)	87, 108, 109, 151, 328, 346
PspPPI	RGGWCCY	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	265
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	4 cut(s)	359, 383, 386, 457
Sau3AI	GATC	4 cut(s)	35, 165, 177, 228
Sau96I	GGNCC	6 cut(s)	87, 108, 109, 151, 328, 346
ScrFI	CCNGG	4 cut(s)	66, 85, 278, 482
SduI	GDGCHC	3 cut(s)	112, 265, 482
SfaNI	GCATC	1 cut(s)	192
SinI	GGWCC	1 cut(s)	87
SseBI	AGGCCT	1 cut(s)	74
SsiI	CCGC	3 cut(s)	105, 382, 456
SstI	GAGCTC	1 cut(s)	265
StuI	AGGCCT	1 cut(s)	74
StyD4I	CCNGG	4 cut(s)	64, 83, 276, 480
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	2 cut(s)	372, 421
TaqI	TCGA	2 cut(s)	34, 168
TauI	GCSGC	2 cut(s)	385, 459
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TseI	GCWGC	2 cut(s)	358, 385
TspDTI	ATGAA	1 cut(s)	320
TspGWI	ACGGA	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	87
XceI	RCATGY	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.