Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001826.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Reverse (-)

40993 .. 41373

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001826.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ctgagaggggcccacgagattcagttcaacaactgcgagagagccaaagaggcccaaatccacgagatcgagaccttgatctgcatcccaacttccgtcggtgttcttgaaatgggttcctccggtttgatcagagagagctgggggttgatccagcaaaccaagtcattgttcgggtcggatcagcccgactcgaaaacaagaccgctcgagttcatcaaccggaacttctccatttttgacatcggcatcattgccggcgtgcaggaagaggatcacagctcgtacaatgacgacaagaaacatgtttttggttctagtaggaagaagaacggagctccgaaccaaacccagacttcgcagattccgactgccagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

126

Amino Acids

14.04

Weight (kDa)

6.09

Isoelectric Point (pI)

32.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	208
AciI	CCGC	1 cut(s)	206
AclWI	GGATC	3 cut(s)	145, 189, 282
AfaI	GTAC	1 cut(s)	287
AflIII	ACRYGT	1 cut(s)	304
AgsI	TTSAA	2 cut(s)	28, 110
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AluBI	AGCT	3 cut(s)	141, 282, 338
AluI	AGCT	3 cut(s)	141, 282, 338
Alw21I	GWGCWC	1 cut(s)	340
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	3 cut(s)	145, 189, 282
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	2 cut(s)	9, 51
ApaI	GGGCCC	1 cut(s)	13
AspS9I	GGNCC	3 cut(s)	9, 10, 52
AvaI	CYCGRG	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	13
BanII	GRGCYC	2 cut(s)	13, 340
BauI	CACGAG	2 cut(s)	14, 62
Bbv12I	GWGCWC	1 cut(s)	340
BclI	TGATCA	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	318
BglI	GCCNNNNNGGC	1 cut(s)	50
BmeT110I	CYCGRG	1 cut(s)	209
BmgT120I	GGNCC	3 cut(s)	9, 10, 52
BmiI	GGNNCC	3 cut(s)	10, 11, 118
BmsI	GCATC	2 cut(s)	93, 258
BsaBI	GATNNNNATC	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	65
BsaWI	WCCGGW	2 cut(s)	122, 222
Bse118I	RCCGGY	1 cut(s)	257
Bse3DI	GCAATG	1 cut(s)	252
Bse8I	GATNNNNATC	1 cut(s)	83
BseGI	GGATG	1 cut(s)	84
BseJI	GATNNNNATC	1 cut(s)	83
BseMI	GCAATG	1 cut(s)	252
BseSI	GKGCMC	1 cut(s)	13
BseYI	CCCAGC	1 cut(s)	141
BsgI	GTGCAG	1 cut(s)	284
BshFI	GGCC	2 cut(s)	11, 53
BsiHKAI	GWGCWC	1 cut(s)	340
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	3 cut(s)	123, 223, 258
BsmAI	GTCTC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	11, 53
Bso31I	GGTCTC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	209
Bsp120I	GGGCCC	1 cut(s)	9
Bsp1286I	GDGCHC	2 cut(s)	13, 340
Bsp143I	GATC	6 cut(s)	66, 78, 129, 150, 181, 274
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	2 cut(s)	11, 53
BspLI	GGNNCC	3 cut(s)	10, 11, 118
BspPI	GGATC	3 cut(s)	145, 189, 282
BspTNI	GGTCTC	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	252
BsrFI	RCCGGY	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	257
BssMI	GATC	6 cut(s)	66, 78, 129, 150, 181, 274
BssSI	CACGAG	2 cut(s)	14, 62
Bst2BI	CACGAG	2 cut(s)	14, 62
Bst6I	CTCTTC	1 cut(s)	264
BstC8I	GCNNGC	2 cut(s)	259, 263
BstDEI	CTNAG	1 cut(s)	2
BstF5I	GGATG	1 cut(s)	84
BstKTI	GATC	6 cut(s)	69, 81, 132, 153, 184, 277
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	6 cut(s)	66, 78, 129, 150, 181, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNSI	RCATGY	1 cut(s)	308
BstSLI	GKGCMC	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	11, 53
BtsCI	GGATG	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	259, 263
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	3 cut(s)	9, 10, 52
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	1 cut(s)	305
CviJI	RGCY	7 cut(s)	11, 44, 53, 141, 187, 282, 338
CviKI_1	RGCY	7 cut(s)	11, 44, 53, 141, 187, 282, 338
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	1 cut(s)	2
DpnI	GATC	6 cut(s)	68, 80, 131, 152, 183, 276
DpnII	GATC	6 cut(s)	66, 78, 129, 150, 181, 274
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Ecl136II	GAGCTC	1 cut(s)	338
Eco24I	GRGCYC	2 cut(s)	13, 340
Eco31I	GGTCTC	1 cut(s)	65
Eco53kI	GAGCTC	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	9
EcoT38I	GRGCYC	2 cut(s)	13, 340
FaeI	CATG	1 cut(s)	308
FaiI	YATR	1 cut(s)	306
FatI	CATG	1 cut(s)	304
FbaI	TGATCA	1 cut(s)	129
FokI	GGATG	1 cut(s)	71
FriOI	GRGCYC	2 cut(s)	13, 340
FspBI	CTAG	1 cut(s)	318
GsaI	CCCAGC	1 cut(s)	145
HaeIII	GGCC	2 cut(s)	11, 53
HapII	CCGG	3 cut(s)	123, 223, 258
Hin1II	CATG	1 cut(s)	308
HinfI	GANTC	3 cut(s)	19, 191, 364
HpaII	CCGG	3 cut(s)	123, 223, 258
Hpy188I	TCNGA	4 cut(s)	134, 181, 342, 369
Hpy188III	TCNNGA	2 cut(s)	70, 107
Hpy99I	CGWCG	1 cut(s)	101
HpyCH4V	TGCA	2 cut(s)	84, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	2
Hsp92II	CATG	1 cut(s)	308
KroI	GCCGGC	1 cut(s)	257
KroNI	GCCGGC	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	6 cut(s)	66, 78, 129, 150, 181, 274
LmnI	GCTCC	2 cut(s)	335, 343
LpnPI	CCDG	7 cut(s)	127, 136, 167, 236, 251, 271, 365
LweI	GCATC	2 cut(s)	93, 258
MaeI	CTAG	1 cut(s)	318
MalI	GATC	6 cut(s)	68, 80, 131, 152, 183, 276
MbiI	CCGCTC	1 cut(s)	208
MboI	GATC	6 cut(s)	66, 78, 129, 150, 181, 274
MboII	GAAGA	3 cut(s)	281, 337, 340
MhlI	GDGCHC	2 cut(s)	13, 340
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	3 cut(s)	43, 130, 265
MroNI	GCCGGC	1 cut(s)	257
MspI	CCGG	3 cut(s)	123, 223, 258
MwoI	GCNNNNNNNGC	1 cut(s)	50
NaeI	GCCGGC	1 cut(s)	259
NdeII	GATC	6 cut(s)	66, 78, 129, 150, 181, 274
NgoMIV	GCCGGC	1 cut(s)	257
NlaIII	CATG	1 cut(s)	308
NlaIV	GGNNCC	3 cut(s)	10, 11, 118
NspI	RCATGY	1 cut(s)	308
PaeR7I	CTCGAG	1 cut(s)	209
PciI	ACATGT	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	1 cut(s)	365
PdiI	GCCGGC	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	19, 364
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PscI	ACATGT	1 cut(s)	304
Psp124BI	GAGCTC	1 cut(s)	340
PspFI	CCCAGC	1 cut(s)	141
PspN4I	GGNNCC	3 cut(s)	10, 11, 118
PspOMI	GGGCCC	1 cut(s)	9
PspPI	GGNCC	3 cut(s)	9, 10, 52
PspXI	VCTCGAGB	1 cut(s)	209
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SacI	GAGCTC	1 cut(s)	340
Sau3AI	GATC	6 cut(s)	66, 78, 129, 150, 181, 274
Sau96I	GGNCC	3 cut(s)	9, 10, 52
SchI	GAGTC	1 cut(s)	185
SduI	GDGCHC	2 cut(s)	13, 340
SetI	ASST	4 cut(s)	77, 143, 284, 340
SfaNI	GCATC	2 cut(s)	93, 258
Sfr274I	CTCGAG	1 cut(s)	209
SlaI	CTCGAG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SsiI	CCGC	1 cut(s)	206
SspMI	CTAG	1 cut(s)	318
SstI	GAGCTC	1 cut(s)	340
TaqI	TCGA	3 cut(s)	69, 194, 210
TfiI	GAWTC	2 cut(s)	19, 364
TspDTI	ATGAA	1 cut(s)	205
TspGWI	ACGGA	2 cut(s)	85, 348
XceI	RCATGY	1 cut(s)	308
XhoI	CTCGAG	1 cut(s)	209
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.