Rmu_sc0004748.1_g000007
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004748.1
OG0000212
Physical Location & Seq
Forward (+)
26278 .. 28390
2113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004748.1_g000007.1.cds

Sequence Viewer

Length: 408 bp
atgcttcagctatcttggcgggtgttgacttttttgacttcggcagccggcgtggggtttaggggattggacggctctgttccaggcaaggtcttcggctccgggacctcaatctggctaagtggggcccacgagcttcagttcaacaactgcgagagagccaaagaggctcaaatccacgggatcgagaccttgatttgcatcccaacttccgacggtgaagaggatcacagctcgtacaatgacgacaagaaacatgtttttggttctagcaagaagaagaacggagctccgaacccaaactcggacttcgcagattccgactgccagatgaaaagagcaccgaagaaacggggccagaaacccgggctgggccgagacactcctctcaaccacgtggaggcatag

Protein Analysis

135

Amino Acids

14.63

Weight (kDa)

7.76

Isoelectric Point (pI)

24.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 19
AclWI GGATC 2 cut(s) 191, 234
AcuI CTGAAG 1 cut(s) 122
AcvI CACGTG 1 cut(s) 397
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 5 cut(s) 54, 114, 304, 371, 400
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 4 cut(s) 10, 136, 234, 290
AluI AGCT 4 cut(s) 10, 136, 234, 290
Alw21I GWGCWC 2 cut(s) 292, 343
Alw26I GTCTC 2 cut(s) 182, 372
AlwI GGATC 2 cut(s) 191, 234
Ama87I CYCGRG 1 cut(s) 365
AoxI GGCC 3 cut(s) 126, 355, 373
ApaI GGGCCC 1 cut(s) 130
ApeKI GCWGC 1 cut(s) 44
AspS9I GGNCC 5 cut(s) 105, 126, 127, 355, 373
AsuC2I CCSGG 3 cut(s) 103, 366, 367
AsuHPI GGTGA 1 cut(s) 230
AvaI CYCGRG 1 cut(s) 365
AvaII GGWCC 1 cut(s) 105
BaeGI GKGCMC 1 cut(s) 130
BanII GRGCYC 2 cut(s) 130, 292
BauI CACGAG 1 cut(s) 131
BbrPI CACGTG 1 cut(s) 397
BbsI GAAGAC 1 cut(s) 85
Bbv12I GWGCWC 2 cut(s) 292, 343
BbvI GCAGC 1 cut(s) 56
BceAI ACGGC 1 cut(s) 88
BcgI CGANNNNNNTGC 2 cut(s) 76, 110
BciT130I CCWGG 1 cut(s) 84
BcnI CCSGG 3 cut(s) 103, 366, 367
BcoDI GTCTC 2 cut(s) 182, 372
BfaI CTAG 1 cut(s) 270
BglI GCCNNNNNGGC 1 cut(s) 167
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 4 cut(s) 84, 103, 366, 367
Bme18I GGWCC 1 cut(s) 105
BmeT110I CYCGRG 1 cut(s) 365
BmgT120I GGNCC 5 cut(s) 105, 126, 127, 355, 373
BmiI GGNNCC 5 cut(s) 100, 106, 127, 128, 356
BmrFI CCNGG 4 cut(s) 84, 103, 366, 367
BmsI GCATC 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 85
BpuMI CCSGG 3 cut(s) 103, 366, 367
BsaAI YACGTR 1 cut(s) 397
BsaBI GATNNNNATC 1 cut(s) 200
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 2 cut(s) 178, 365
Bsc4I CCNNNNNNNGG 5 cut(s) 54, 114, 304, 371, 400
Bse118I RCCGGY 1 cut(s) 47
Bse8I GATNNNNATC 1 cut(s) 200
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 2 cut(s) 178, 365
BseGI GGATG 1 cut(s) 201
BseJI GATNNNNATC 1 cut(s) 200
BseLI CCNNNNNNNGG 5 cut(s) 54, 114, 304, 371, 400
BseRI GAGGAG 1 cut(s) 375
BseSI GKGCMC 1 cut(s) 130
BseXI GCAGC 1 cut(s) 56
BseYI CCCAGC 1 cut(s) 370
BshFI GGCC 3 cut(s) 128, 357, 375
BsiHKAI GWGCWC 2 cut(s) 292, 343
BsiHKCI CYCGRG 1 cut(s) 365
BsiSI CCGG 3 cut(s) 48, 102, 366
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 5 cut(s) 54, 114, 304, 371, 400
BsmAI GTCTC 2 cut(s) 182, 372
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 3 cut(s) 128, 357, 375
Bso31I GGTCTC 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 365
Bsp120I GGGCCC 1 cut(s) 126
Bsp1286I GDGCHC 3 cut(s) 130, 292, 343
Bsp143I GATC 2 cut(s) 183, 226
BspACI CCGC 1 cut(s) 19
BspANI GGCC 3 cut(s) 128, 357, 375
BspLI GGNNCC 5 cut(s) 100, 106, 127, 128, 356
BspPI GGATC 2 cut(s) 191, 234
BspTNI GGTCTC 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 178, 365
BssMI GATC 2 cut(s) 183, 226
BssSI CACGAG 1 cut(s) 131
Bst2BI CACGAG 1 cut(s) 131
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 216
BstBAI YACGTR 1 cut(s) 397
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 1 cut(s) 119
BstDSI CCRYGG 1 cut(s) 178
BstF5I GGATG 1 cut(s) 201
BstKTI GATC 2 cut(s) 186, 229
BstMAI GTCTC 2 cut(s) 182, 372
BstMBI GATC 2 cut(s) 183, 226
BstMWI GCNNNNNNNGC 2 cut(s) 16, 167
BstNI CCWGG 1 cut(s) 84
BstNSI RCATGY 1 cut(s) 260
BstSCI CCNGG 4 cut(s) 82, 101, 364, 365
BstSLI GKGCMC 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 56
BstV2I GAAGAC 1 cut(s) 85
BsuRI GGCC 3 cut(s) 128, 357, 375
BtgI CCRYGG 1 cut(s) 178
BtsCI GGATG 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 5 cut(s) 105, 126, 127, 355, 373
Cfr9I CCCGGG 1 cut(s) 365
Csp6I GTAC 1 cut(s) 238
CviAII CATG 1 cut(s) 257
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 1 cut(s) 119
DpnI GATC 2 cut(s) 185, 228
DpnII GATC 2 cut(s) 183, 226
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Ecl136II GAGCTC 1 cut(s) 290
Eco24I GRGCYC 2 cut(s) 130, 292
Eco31I GGTCTC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 122
Eco72I CACGTG 1 cut(s) 397
Eco88I CYCGRG 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 290
EcoO109I RGGNCCY 2 cut(s) 105, 126
EcoRII CCWGG 1 cut(s) 82
EcoT38I GRGCYC 2 cut(s) 130, 292
FaeI CATG 1 cut(s) 260
FaiI YATR 2 cut(s) 258, 406
FaqI GGGAC 1 cut(s) 118
FatI CATG 1 cut(s) 256
FauI CCCGC 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 1 cut(s) 188
FriOI GRGCYC 2 cut(s) 130, 292
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 1 cut(s) 270
GluI GCNGC 1 cut(s) 45
GsaI CCCAGC 1 cut(s) 374
HaeIII GGCC 3 cut(s) 128, 357, 375
HapII CCGG 3 cut(s) 48, 102, 366
Hin1II CATG 1 cut(s) 260
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HinfI GANTC 1 cut(s) 317
HpaII CCGG 3 cut(s) 48, 102, 366
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 4 cut(s) 214, 294, 307, 322
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 27
Hpy99I CGWCG 1 cut(s) 218
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 1 cut(s) 201
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 167
HpyF3I CTNAG 1 cut(s) 119
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 1 cut(s) 260
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
Kzo9I GATC 2 cut(s) 183, 226
LmnI GCTCC 3 cut(s) 104, 287, 295
LpnPI CCDG 9 cut(s) 61, 69, 96, 100, 115, 341, 356, 371, 379
Lsp1109I GCAGC 1 cut(s) 56
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 270
MaeII ACGT 1 cut(s) 396
MalI GATC 2 cut(s) 185, 228
MboI GATC 2 cut(s) 183, 226
MboII GAAGA 5 cut(s) 85, 233, 289, 292, 358
MhlI GDGCHC 3 cut(s) 130, 292, 343
MmeI TCCRAC 2 cut(s) 237, 345
MnlI CCTC 5 cut(s) 118, 160, 217, 394, 396
MroNI GCCGGC 1 cut(s) 47
MspI CCGG 3 cut(s) 48, 102, 366
MspR9I CCNGG 4 cut(s) 84, 103, 366, 367
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 16, 167
NaeI GCCGGC 1 cut(s) 49
NciI CCSGG 3 cut(s) 103, 366, 367
NdeII GATC 2 cut(s) 183, 226
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 5 cut(s) 100, 106, 127, 128, 356
NmeAIII GCCGAG 1 cut(s) 401
NspI RCATGY 1 cut(s) 260
PciI ACATGT 1 cut(s) 256
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PdiI GCCGGC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 317
PfoI TCCNGGA 1 cut(s) 101
PkrI GCNGC 1 cut(s) 46
PmaCI CACGTG 1 cut(s) 397
PmlI CACGTG 1 cut(s) 397
Ppu21I YACGTR 1 cut(s) 397
PpuMI RGGWCCY 1 cut(s) 105
PscI ACATGT 1 cut(s) 256
Psp124BI GAGCTC 1 cut(s) 292
Psp5II RGGWCCY 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 82
PspCI CACGTG 1 cut(s) 397
PspFI CCCAGC 1 cut(s) 370
PspGI CCWGG 1 cut(s) 82
PspN4I GGNNCC 5 cut(s) 100, 106, 127, 128, 356
PspOMI GGGCCC 1 cut(s) 126
PspPI GGNCC 5 cut(s) 105, 126, 127, 355, 373
PspPPI RGGWCCY 1 cut(s) 105
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SacI GAGCTC 1 cut(s) 292
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 2 cut(s) 183, 226
Sau96I GGNCC 5 cut(s) 105, 126, 127, 355, 373
ScrFI CCNGG 4 cut(s) 84, 103, 366, 367
SduI GDGCHC 3 cut(s) 130, 292, 343
SetI ASST 8 cut(s) 12, 93, 110, 138, 194, 236, 292, 399
SfaNI GCATC 1 cut(s) 210
SinI GGWCC 1 cut(s) 105
SmaI CCCGGG 1 cut(s) 367
SsiI CCGC 1 cut(s) 19
SspMI CTAG 1 cut(s) 270
SstI GAGCTC 1 cut(s) 292
StyD4I CCNGG 4 cut(s) 82, 101, 364, 365
TaaI ACNGT 1 cut(s) 218
TaiI ACGT 1 cut(s) 399
TaqI TCGA 1 cut(s) 186
TfiI GAWTC 1 cut(s) 317
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 347
TspGWI ACGGA 1 cut(s) 300
TspMI CCCGGG 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 105
XceI RCATGY 1 cut(s) 260
XmaI CCCGGG 1 cut(s) 365
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.