Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Forward (+)

19581044 .. 19582534

Gene Structure 1491 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1086800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGGAAGAATTAATAATCTCCCCCTCTTCATCCTCATCCCTAGTCTCCTTGCCTCAAGAAAACCATCCATCCCTCCAACAAAGGCTCCAATTCATTCTTCAATCCCAGCCAGACTGGTGGTCATACGCCATCTTCTGGCAAACCTCGAACGACCACCAGGTGGACAATGGTCGTCTCTTTCTGACCTGGGGAGACGGCCATTTCCAAGGCCCCAAAGACGCATCACCCAACAACCATCACCACAACCCCTACGGAGGTCTATCCGAAAGAAGGAAGATCCTCAAGGGCATCCAGTCCCTCATCAACGACACCAACAATCCAGATAACCATCATCAAGACTTGATCCTCGACAACATGGGTTTAAACGCCGACGTCACCAACGTGGAATGGTTCTACGTCACGTCGTTGGCTCGATCCTTCTCCGTCGGTGAAAGCATTAGTACTAATGTTCCCGGCAAAGCTTTTAGCTCTGGATCTTTGGTGTGGCTGACTGGAAGCCATGAGCTTCAATTCTACAACTGCGAAAGAGCAAAAGAAGCACAAATGCATGGGATTCAAACCCTAGTCTGCATCCCAACCCCCACCGGAGTTCTCGAGCTGGGCTCTTCAGATTTGATCCGAGAAAATGGGAACCTGGTTCAGCAAACCGAATCCTTATTCGGCTCGGATGTCGTTTGGGGCCAACCCGACCCTGGAACCAGATCCCCCATCGATTTAATCAACCGAAACTTCTCCTTCGCCGACATTGGCATCATCGCCGGCGTAGGGGAAGAAGACGACAAAAAGGAAGTTGCCTTGGACATAACGGCGATGAAGAAGAAGTGCGGAATAGCATGTCCGGATCTTGTCCAGTTGTCGAATTTGAATAGCCTTAACCCGGAACATTCGGATTCGGAGTTTCCGAAACGGACACCGAAAAAGCGAGGGCGAAAACCGGGGCTGGGGAGAGACACACCGTTGAACCATGTGGAAGCGGAGAGGCAGCGGCGGGAGAAGCTCAACCACCGGTTCTACGCCCTGCGAGCGGTGGTGCCGAACGTGTCGAGAATGGACAAGGCGTCGCTGCTGTCCGATGCCGTTTCGTACATCAACGAGCTGAAAGGCAAGGTGGACGAGCTGGAGTCGCAGGTGCAGAGAGAGTCCAAGAAAGTGAAAGTCGAGACCGGCGACAACTTGGACAATCAGAGCACCACGACGTCGGTGGAGCAAACGCGGCCGCCCAACTCGTCGGCGAGTGGGTCTACGGGGTTCGAGACGGAGGTGAAGATAGTAGGTTCGGACGCCATGATTAGGGTTCAGTCCGCGAATGTGAACTACCCATCAGCTAGGTTAATGGCGGCACTGCGTGACTTGGAGTTTGAGATCCACCATGCGAGCTTGTCGTGCATGAACGAGCTCATGCTGCAAGATGTTGTGGTGAAGGTGCCTAACAACATGAGAAGTGAAGAGAGTATCAAAGCTGCTCTTCTTAAAATATTAGATCAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

497

Amino Acids

55.13

Weight (kDa)

5.64

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	25 - 220	1.5e-51	bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH	PF00010	321 - 367	9.6e-12	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1117
AatII	GACGTC	2 cut(s)	375, 1199
Acc36I	ACCTGC	1 cut(s)	1117
AccB1I	GGYRCC	2 cut(s)	1030, 1423
AccB7I	CCANNNNNTGG	2 cut(s)	135, 160
AccBSI	CCGCTC	1 cut(s)	1025
AccI	GTMKAC	1 cut(s)	1241
AccII	CGCG	2 cut(s)	1213, 1304
AccIII	TCCGGA	1 cut(s)	838
AciI	CCGC	9 cut(s)	825, 974, 985, 988, 1025, 1213, 1217, 1302, 1337
AclWI	GGATC	8 cut(s)	271, 337, 408, 481, 610, 696, 849, 1357
AcoI	YGGCCR	2 cut(s)	196, 1214
AcsI	RAATTY	1 cut(s)	859
AcuI	CTGAAG	1 cut(s)	591
AcyI	GRCGYC	4 cut(s)	372, 1058, 1196, 1281
AdeI	CACNNNGTG	2 cut(s)	160, 1346
AfaI	GTAC	2 cut(s)	442, 1085
AflIII	ACRYGT	1 cut(s)	1038
AgeI	ACCGGT	1 cut(s)	1005
AgsI	TTSAA	5 cut(s)	101, 509, 557, 865, 961
AhdI	GACNNNNNGTC	2 cut(s)	118, 1057
AjiI	CACGTC	1 cut(s)	402
AjnI	CCWGG	4 cut(s)	156, 185, 633, 691
AjuI	GAANNNNNNNTTGG	2 cut(s)	81, 113
AleI	CACNNNNGTG	1 cut(s)	380
Alw21I	GWGCWC	2 cut(s)	1190, 1398
Alw26I	GTCTC	6 cut(s)	49, 179, 186, 942, 1154, 1247
AlwI	GGATC	8 cut(s)	271, 337, 408, 481, 610, 696, 849, 1357
Ama87I	CYCGRG	1 cut(s)	593
Aor13HI	TCCGGA	1 cut(s)	838
AoxI	GGCC	4 cut(s)	196, 208, 679, 1214
ApeKI	GCWGC	4 cut(s)	982, 1063, 1402, 1460
ApoI	RAATTY	1 cut(s)	859
ArsI	GACNNNNNNTTYG	2 cut(s)	1340, 1372
AseI	ATTAAT	1 cut(s)	11
AsiGI	ACCGGT	1 cut(s)	1005
AspS9I	GGNCC	2 cut(s)	209, 679
AsuC2I	CCSGG	3 cut(s)	453, 878, 936
AsuHPI	GGTGA	6 cut(s)	216, 230, 367, 440, 1273, 1429
AvaI	CYCGRG	1 cut(s)	593
BanI	GGYRCC	2 cut(s)	1030, 1423
BanII	GRGCYC	2 cut(s)	605, 1398
BbsI	GAAGAC	1 cut(s)	780
Bbv12I	GWGCWC	2 cut(s)	1190, 1398
BbvI	GCAGC	4 cut(s)	994, 1050, 1389, 1447
BccI	CCATC	7 cut(s)	72, 76, 137, 243, 336, 716, 1327
BceAI	ACGGC	3 cut(s)	211, 822, 1061
BciT130I	CCWGG	4 cut(s)	158, 187, 635, 693
BcnI	CCSGG	3 cut(s)	453, 878, 936
BcoDI	GTCTC	6 cut(s)	49, 179, 186, 942, 1154, 1247
BfaI	CTAG	3 cut(s)	41, 563, 1326
BfuAI	ACCTGC	1 cut(s)	1117
BisI	GCNGC	8 cut(s)	983, 986, 1064, 1214, 1217, 1338, 1403, 1461
BlsI	GCNGC	8 cut(s)	984, 987, 1065, 1215, 1218, 1339, 1404, 1462
BmcAI	AGTACT	1 cut(s)	442
Bme1390I	CCNGG	7 cut(s)	158, 187, 453, 635, 693, 878, 936
BmeRI	GACNNNNNGTC	2 cut(s)	118, 1057
BmeT110I	CYCGRG	1 cut(s)	593
BmgBI	CACGTC	1 cut(s)	402
BmgT120I	GGNCC	2 cut(s)	209, 679
BmiI	GGNNCC	7 cut(s)	86, 211, 632, 680, 697, 1032, 1425
BmrFI	CCNGG	7 cut(s)	158, 187, 453, 635, 693, 878, 936
BmsI	GCATC	5 cut(s)	230, 297, 579, 759, 1063
BoxI	GACNNNNGTC	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	780
BplI	GAGNNNNNCTC	2 cut(s)	587, 619
BpmI	CTGGAG	1 cut(s)	1139
BpuEI	CTTGAG	2 cut(s)	39, 266
BpuMI	CCSGG	3 cut(s)	453, 878, 936
Bsa29I	ATCGAT	1 cut(s)	711
BsaBI	GATNNNNATC	1 cut(s)	327
BsaHI	GRCGYC	4 cut(s)	372, 1058, 1196, 1281
BsaI	GGTCTC	1 cut(s)	1154
BsaJI	CCNNGG	5 cut(s)	186, 205, 691, 795, 935
BsaWI	WCCGGW	3 cut(s)	584, 838, 1005
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bse118I	RCCGGY	3 cut(s)	758, 1005, 1163
Bse1I	ACTGG	4 cut(s)	119, 292, 496, 850
Bse8I	GATNNNNATC	1 cut(s)	327
BseAI	TCCGGA	1 cut(s)	838
BseBI	CCWGG	4 cut(s)	158, 187, 635, 693
BseCI	ATCGAT	1 cut(s)	711
BseDI	CCNNGG	5 cut(s)	186, 205, 691, 795, 935
BseGI	GGATG	7 cut(s)	29, 35, 64, 68, 288, 570, 673
BseJI	GATNNNNATC	1 cut(s)	327
BseNI	ACTGG	4 cut(s)	119, 292, 496, 850
BseX3I	CGGCCG	1 cut(s)	1214
BseXI	GCAGC	4 cut(s)	994, 1050, 1389, 1447
BseYI	CCCAGC	3 cut(s)	105, 598, 940
BsgI	GTGCAG	1 cut(s)	1151
Bsh1236I	CGCG	2 cut(s)	1213, 1304
Bsh1285I	CGRYCG	1 cut(s)	1217
BshFI	GGCC	4 cut(s)	198, 210, 681, 1216
BshNI	GGYRCC	2 cut(s)	1030, 1423
BshTI	ACCGGT	1 cut(s)	1005
BshVI	ATCGAT	1 cut(s)	711
BsiEI	CGRYCG	1 cut(s)	1217
BsiHKAI	GWGCWC	2 cut(s)	1190, 1398
BsiHKCI	CYCGRG	1 cut(s)	593
BsiSI	CCGG	8 cut(s)	453, 585, 759, 839, 878, 935, 1006, 1164
BslFI	GGGAC	1 cut(s)	280
BsmAI	GTCTC	6 cut(s)	49, 179, 186, 942, 1154, 1247
BsmBI	CGTCTC	3 cut(s)	179, 186, 1247
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	4 cut(s)	198, 210, 681, 1216
Bso31I	GGTCTC	1 cut(s)	1154
BsoBI	CYCGRG	1 cut(s)	593
Bsp1286I	GDGCHC	3 cut(s)	605, 1190, 1398
Bsp13I	TCCGGA	1 cut(s)	838
Bsp143I	GATC	9 cut(s)	276, 342, 413, 473, 615, 701, 841, 1362, 1480
BspACI	CCGC	9 cut(s)	825, 974, 985, 988, 1025, 1213, 1217, 1302, 1337
BspANI	GGCC	4 cut(s)	198, 210, 681, 1216
BspDI	ATCGAT	1 cut(s)	711
BspEI	TCCGGA	1 cut(s)	838
BspFNI	CGCG	2 cut(s)	1213, 1304
BspLI	GGNNCC	7 cut(s)	86, 211, 632, 680, 697, 1032, 1425
BspMI	ACCTGC	1 cut(s)	1117
BspPI	GGATC	8 cut(s)	271, 337, 408, 481, 610, 696, 849, 1357
BspQI	GCTCTTC	2 cut(s)	610, 1470
BspT107I	GGYRCC	2 cut(s)	1030, 1423
BspTNI	GGTCTC	1 cut(s)	1154
BsrBI	CCGCTC	1 cut(s)	1025
BsrFI	RCCGGY	3 cut(s)	758, 1005, 1163
BsrI	ACTGG	4 cut(s)	119, 292, 496, 850
BssAI	RCCGGY	3 cut(s)	758, 1005, 1163
BssECI	CCNNGG	5 cut(s)	186, 205, 691, 795, 935
BssMI	GATC	9 cut(s)	276, 342, 413, 473, 615, 701, 841, 1362, 1480
BssNI	GRCGYC	4 cut(s)	372, 1058, 1196, 1281
BssT1I	CCWWGG	2 cut(s)	205, 795
Bst2UI	CCWGG	4 cut(s)	158, 187, 635, 693
Bst4CI	ACNGT	1 cut(s)	957
Bst6I	CTCTTC	4 cut(s)	31, 610, 1440, 1470
BstACI	GRCGYC	4 cut(s)	372, 1058, 1196, 1281
BstC8I	GCNNGC	3 cut(s)	760, 1023, 1375
BstF5I	GGATG	7 cut(s)	29, 35, 64, 68, 288, 570, 673
BstFNI	CGCG	2 cut(s)	1213, 1304
BstKTI	GATC	9 cut(s)	279, 345, 416, 476, 618, 704, 844, 1365, 1483
BstMAI	GTCTC	6 cut(s)	49, 179, 186, 942, 1154, 1247
BstMBI	GATC	9 cut(s)	276, 342, 413, 473, 615, 701, 841, 1362, 1480
BstMCI	CGRYCG	1 cut(s)	1217
BstMWI	GCNNNNNNNGC	7 cut(s)	536, 994, 1022, 1123, 1213, 1383, 1402
BstNI	CCWGG	4 cut(s)	158, 187, 635, 693
BstNSI	RCATGY	1 cut(s)	837
BstPAI	GACNNNNGTC	1 cut(s)	168
BstSCI	CCNGG	7 cut(s)	156, 185, 451, 633, 691, 876, 934
BstUI	CGCG	2 cut(s)	1213, 1304
BstV1I	GCAGC	4 cut(s)	994, 1050, 1389, 1447
BstV2I	GAAGAC	1 cut(s)	780
BstX2I	RGATCY	5 cut(s)	276, 473, 701, 841, 1362
BstXI	CCANNNNNNTGG	1 cut(s)	117
BstYI	RGATCY	5 cut(s)	276, 473, 701, 841, 1362
BstZI	CGGCCG	1 cut(s)	1214
Bsu15I	ATCGAT	1 cut(s)	711
BsuRI	GGCC	4 cut(s)	198, 210, 681, 1216
BsuTUI	ATCGAT	1 cut(s)	711
BtgZI	GCGATG	2 cut(s)	739, 824
BtrI	CACGTC	1 cut(s)	402
BtsCI	GGATG	7 cut(s)	29, 35, 64, 68, 288, 570, 673
BtsI	GCAGTG	1 cut(s)	1340
BtsIMutI	CAGTG	1 cut(s)	1340
BveI	ACCTGC	1 cut(s)	1117
Cac8I	GCNNGC	3 cut(s)	760, 1023, 1375
CciNI	GCGGCCGC	1 cut(s)	1214
Cfr10I	RCCGGY	3 cut(s)	758, 1005, 1163
Cfr13I	GGNCC	2 cut(s)	209, 679
ClaI	ATCGAT	1 cut(s)	711
CseI	GACGC	3 cut(s)	227, 1047, 1289
CsiI	ACCWGGT	2 cut(s)	156, 633
Csp6I	GTAC	2 cut(s)	441, 1084
CspAI	ACCGGT	1 cut(s)	1005
CviQI	GTAC	2 cut(s)	441, 1084
DpnI	GATC	9 cut(s)	278, 344, 415, 475, 617, 703, 843, 1364, 1482
DpnII	GATC	9 cut(s)	276, 342, 413, 473, 615, 701, 841, 1362, 1480
DraI	TTTAAA	1 cut(s)	363
DraIII	CACNNNGTG	2 cut(s)	160, 1346
DriI	GACNNNNNGTC	2 cut(s)	118, 1057
EaeI	YGGCCR	2 cut(s)	196, 1214
EagI	CGGCCG	1 cut(s)	1214
Eam1104I	CTCTTC	4 cut(s)	31, 610, 1440, 1470
Eam1105I	GACNNNNNGTC	2 cut(s)	118, 1057
EarI	CTCTTC	4 cut(s)	31, 610, 1440, 1470
Ecl136II	GAGCTC	1 cut(s)	1396
EclXI	CGGCCG	1 cut(s)	1214
Eco130I	CCWWGG	2 cut(s)	205, 795
Eco24I	GRGCYC	2 cut(s)	605, 1398
Eco31I	GGTCTC	1 cut(s)	1154
Eco52I	CGGCCG	1 cut(s)	1214
Eco53kI	GAGCTC	1 cut(s)	1396
Eco57I	CTGAAG	1 cut(s)	591
Eco88I	CYCGRG	1 cut(s)	593
EcoICRI	GAGCTC	1 cut(s)	1396
EcoO109I	RGGNCCY	1 cut(s)	209
EcoRII	CCWGG	4 cut(s)	156, 185, 633, 691
EcoT14I	CCWWGG	2 cut(s)	205, 795
EcoT22I	ATGCAT	1 cut(s)	549
EcoT38I	GRGCYC	2 cut(s)	605, 1398
ErhI	CCWWGG	2 cut(s)	205, 795
Esp3I	CGTCTC	3 cut(s)	179, 186, 1247
FalI	AAGNNNNNCTT	2 cut(s)	1449, 1481
FaqI	GGGAC	1 cut(s)	280
FauI	CCCGC	1 cut(s)	981
FblI	GTMKAC	1 cut(s)	1241
Fnu4HI	GCNGC	8 cut(s)	983, 986, 1064, 1214, 1217, 1338, 1403, 1461
FokI	GGATG	7 cut(s)	16, 22, 51, 55, 275, 557, 680
FriOI	GRGCYC	2 cut(s)	605, 1398
Fsp4HI	GCNGC	8 cut(s)	983, 986, 1064, 1214, 1217, 1338, 1403, 1461
FspBI	CTAG	3 cut(s)	41, 563, 1326
GluI	GCNGC	8 cut(s)	983, 986, 1064, 1214, 1217, 1338, 1403, 1461
GsaI	CCCAGC	3 cut(s)	109, 602, 944
GsuI	CTGGAG	1 cut(s)	1139
HaeIII	GGCC	4 cut(s)	198, 210, 681, 1216
HapII	CCGG	8 cut(s)	453, 585, 759, 839, 878, 935, 1006, 1164
HgaI	GACGC	3 cut(s)	227, 1047, 1289
Hin1I	GRCGYC	4 cut(s)	372, 1058, 1196, 1281
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	5 cut(s)	553, 650, 890, 1121, 1139
HpaII	CCGG	8 cut(s)	453, 585, 759, 839, 878, 935, 1006, 1164
HphI	GGTGA	6 cut(s)	216, 230, 367, 440, 1273, 1429
Hpy166II	GTNNAC	4 cut(s)	163, 1111, 1242, 1312
Hpy188III	TCNNGA	9 cut(s)	56, 320, 335, 471, 593, 839, 1044, 1159, 1252
Hpy8I	GTNNAC	4 cut(s)	163, 1111, 1242, 1312
Hpy99I	CGWCG	7 cut(s)	374, 406, 428, 1063, 1198, 1201, 1231
HpyAV	CCTTC	4 cut(s)	264, 427, 745, 1414
HpyCH4III	ACNGT	1 cut(s)	957
HpyCH4IV	ACGT	6 cut(s)	372, 381, 396, 401, 1038, 1196
HpyCH4V	TGCA	5 cut(s)	547, 570, 1132, 1386, 1405
HpyF10VI	GCNNNNNNNGC	7 cut(s)	536, 994, 1022, 1123, 1213, 1383, 1402
HpySE526I	ACGT	6 cut(s)	372, 381, 396, 401, 1038, 1196
Hsp92I	GRCGYC	4 cut(s)	372, 1058, 1196, 1281
Kpn2I	TCCGGA	1 cut(s)	838
KroI	GCCGGC	1 cut(s)	758
KroNI	GCCGGC	1 cut(s)	760
Kzo9I	GATC	9 cut(s)	276, 342, 413, 473, 615, 701, 841, 1362, 1480
LguI	GCTCTTC	2 cut(s)	610, 1470
LmnI	GCTCC	2 cut(s)	90, 1204
Lsp1109I	GCAGC	4 cut(s)	994, 1050, 1389, 1447
LweI	GCATC	5 cut(s)	230, 297, 579, 759, 1063
MabI	ACCWGGT	2 cut(s)	156, 633
MaeI	CTAG	3 cut(s)	41, 563, 1326
MaeII	ACGT	6 cut(s)	372, 381, 396, 401, 1038, 1196
MaeIII	GTNAC	3 cut(s)	373, 397, 1346
MalI	GATC	9 cut(s)	278, 344, 415, 475, 617, 703, 843, 1364, 1482
MbiI	CCGCTC	1 cut(s)	1025
MboI	GATC	9 cut(s)	276, 342, 413, 473, 615, 701, 841, 1362, 1480
MflI	RGATCY	5 cut(s)	276, 473, 701, 841, 1362
MhlI	GDGCHC	3 cut(s)	605, 1190, 1398
MluCI	AATT	4 cut(s)	8, 89, 509, 859
MlyI	GAGTC	2 cut(s)	1130, 1148
MmeI	TCCRAC	1 cut(s)	100
Mph1103I	ATGCAT	1 cut(s)	549
MreI	CGCCGGCG	1 cut(s)	758
MroI	TCCGGA	1 cut(s)	838
MroNI	GCCGGC	1 cut(s)	758
MseI	TTAA	6 cut(s)	11, 362, 716, 873, 1331, 1470
MslI	CAYNNNNRTG	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	985
MspI	CCGG	8 cut(s)	453, 585, 759, 839, 878, 935, 1006, 1164
MspR9I	CCNGG	7 cut(s)	158, 187, 453, 635, 693, 878, 936
MssI	GTTTAAAC	1 cut(s)	363
MvaI	CCWGG	4 cut(s)	158, 187, 635, 693
MvnI	CGCG	2 cut(s)	1213, 1304
MwoI	GCNNNNNNNGC	7 cut(s)	536, 994, 1022, 1123, 1213, 1383, 1402
NaeI	GCCGGC	1 cut(s)	760
NciI	CCSGG	3 cut(s)	453, 878, 936
NdeII	GATC	9 cut(s)	276, 342, 413, 473, 615, 701, 841, 1362, 1480
NgoMIV	GCCGGC	1 cut(s)	758
NlaIV	GGNNCC	7 cut(s)	86, 211, 632, 680, 697, 1032, 1425
NmuCI	GTSAC	3 cut(s)	373, 397, 1346
NotI	GCGGCCGC	1 cut(s)	1214
NsiI	ATGCAT	1 cut(s)	549
NspI	RCATGY	1 cut(s)	837
OliI	CACNNNNGTG	1 cut(s)	380
PaeR7I	CTCGAG	1 cut(s)	593
PaqCI	CACCTGC	1 cut(s)	1117
PciSI	GCTCTTC	2 cut(s)	610, 1470
PcsI	WCGNNNNNNNCGW	3 cut(s)	378, 899, 1164
PdiI	GCCGGC	1 cut(s)	760
PfeI	GAWTC	3 cut(s)	553, 650, 890
PflMI	CCANNNNNTGG	2 cut(s)	135, 160
PinAI	ACCGGT	1 cut(s)	1005
PkrI	GCNGC	8 cut(s)	984, 987, 1065, 1215, 1218, 1339, 1404, 1462
PleI	GAGTC	2 cut(s)	1129, 1147
PmeI	GTTTAAAC	1 cut(s)	363
PpsI	GAGTC	2 cut(s)	1129, 1147
PshAI	GACNNNNGTC	1 cut(s)	168
PshBI	ATTAAT	1 cut(s)	11
Psp124BI	GAGCTC	1 cut(s)	1398
Psp6I	CCWGG	4 cut(s)	156, 185, 633, 691
PspFI	CCCAGC	3 cut(s)	105, 598, 940
PspGI	CCWGG	4 cut(s)	156, 185, 633, 691
PspN4I	GGNNCC	7 cut(s)	86, 211, 632, 680, 697, 1032, 1425
PspPI	GGNCC	2 cut(s)	209, 679
PsuI	RGATCY	5 cut(s)	276, 473, 701, 841, 1362
RsaI	GTAC	2 cut(s)	442, 1085
RsaNI	GTAC	2 cut(s)	441, 1084
RseI	CAYNNNNRTG	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	1398
SapI	GCTCTTC	2 cut(s)	610, 1470
SaqAI	TTAA	6 cut(s)	11, 362, 716, 873, 1331, 1470
SatI	GCNGC	8 cut(s)	983, 986, 1064, 1214, 1217, 1338, 1403, 1461
Sau3AI	GATC	9 cut(s)	276, 342, 413, 473, 615, 701, 841, 1362, 1480
Sau96I	GGNCC	2 cut(s)	209, 679
ScaI	AGTACT	1 cut(s)	442
SchI	GAGTC	2 cut(s)	1130, 1148
ScrFI	CCNGG	7 cut(s)	158, 187, 453, 635, 693, 878, 936
SduI	GDGCHC	3 cut(s)	605, 1190, 1398
SexAI	ACCWGGT	2 cut(s)	156, 633
SfaNI	GCATC	5 cut(s)	230, 297, 579, 759, 1063
Sfr274I	CTCGAG	1 cut(s)	593
SgrAI	CRCCGGYG	1 cut(s)	758
SlaI	CTCGAG	1 cut(s)	593
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	3 cut(s)	54, 281, 593
SmoI	CTYRAG	3 cut(s)	54, 281, 593
Sse9I	AATT	4 cut(s)	8, 89, 509, 859
SsiI	CCGC	9 cut(s)	825, 974, 985, 988, 1025, 1213, 1217, 1302, 1337
SspI	AATATT	1 cut(s)	1476
SspMI	CTAG	3 cut(s)	41, 563, 1326
SstI	GAGCTC	1 cut(s)	1398
StyD4I	CCNGG	7 cut(s)	156, 185, 451, 633, 691, 876, 934
StyI	CCWWGG	2 cut(s)	205, 795
TaaI	ACNGT	1 cut(s)	957
TaiI	ACGT	6 cut(s)	375, 384, 399, 404, 1041, 1199
TaqI	TCGA	9 cut(s)	146, 348, 412, 594, 711, 857, 1043, 1158, 1251
TasI	AATT	4 cut(s)	8, 89, 509, 859
TatI	WGTACW	1 cut(s)	440
TauI	GCSGC	4 cut(s)	988, 1216, 1219, 1340
TfiI	GAWTC	3 cut(s)	553, 650, 890
Tru1I	TTAA	6 cut(s)	11, 362, 716, 873, 1331, 1470
Tru9I	TTAA	6 cut(s)	11, 362, 716, 873, 1331, 1470
TscAI	CASTG	1 cut(s)	1347
TseFI	GTSAC	3 cut(s)	373, 397, 1346
TseI	GCWGC	4 cut(s)	982, 1063, 1402, 1460
Tsp45I	GTSAC	3 cut(s)	373, 397, 1346
TspDTI	ATGAA	4 cut(s)	18, 82, 827, 1403
TspGWI	ACGGA	4 cut(s)	267, 412, 922, 1271
TspRI	CASTG	1 cut(s)	1347
Van91I	CCANNNNNTGG	2 cut(s)	135, 160
VspI	ATTAAT	1 cut(s)	11
XapI	RAATTY	1 cut(s)	859
XceI	RCATGY	1 cut(s)	837
XcmI	CCANNNNNNNNNTGG	3 cut(s)	164, 689, 1198
XhoI	CTCGAG	1 cut(s)	593
XmiI	GTMKAC	1 cut(s)	1241
XspI	CTAG	3 cut(s)	41, 563, 1326
ZraI	GACGTC	2 cut(s)	373, 1197
ZrmI	AGTACT	1 cut(s)	442
Zsp2I	ATGCAT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.