Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001433.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Reverse (-)

191876 .. 192907

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001433.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atgagagatagaggtattgatcttgacacgcaatgtcctagatgtgatgaggaagtggaatctccgctgcatgctagggtggattgtaacgcagccaacgagatactaatcttggccccaaatggccttcggctccaggacctcaatctggctgagcagggcccacgagtttcagttcaacaactgcgagagagccaaagaggaccaaatccacaagatcgagaccttgatctgcatctaacttctgacggtgttcttgaaatgggttcctccggtttgattagagagaactgggggttgattcagcaagccaagtcattgttcgggtcggatcagcccgacccggaaacaagaccgctcgagttcatcaactggaacttctccatttttgacatcggcatcattgcgggcgtacaggaagaggatcacagctcgtacaatgacgacaagaaacatgtttttggttttagcaagaagaagaacggagctccgaatccaaacccggacttcgcagattccgactgccagatgaaaagagcgccgaagaaacggggctggaaacccgggttgggccgagacacgccgctcaaccacgtggaggtggagcggcagcggcgggagaagctcacctcgcaagggcggcgttggaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

217

Amino Acids

24.62

Weight (kDa)

5.79

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	358, 586, 607
AciI	CCGC	8 cut(s)	65, 356, 407, 584, 607, 613, 616, 640
AclWI	GGATC	2 cut(s)	339, 432
AcvI	CACGTG	1 cut(s)	595
AfaI	GTAC	2 cut(s)	414, 437
AfiI	CCNNNNNNNGG	4 cut(s)	148, 569, 598, 636
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	2 cut(s)	179, 260
AjnI	CCWGG	1 cut(s)	135
AjuI	GAANNNNNNNTTGG	4 cut(s)	305, 337, 551, 583
AluBI	AGCT	3 cut(s)	432, 488, 625
AluI	AGCT	3 cut(s)	432, 488, 625
Alw21I	GWGCWC	1 cut(s)	490
Alw26I	GTCTC	2 cut(s)	216, 570
AlwI	GGATC	2 cut(s)	339, 432
Ama87I	CYCGRG	2 cut(s)	359, 563
AoxI	GGCC	4 cut(s)	114, 124, 160, 571
ApaI	GGGCCC	1 cut(s)	164
ApeKI	GCWGC	3 cut(s)	67, 92, 610
AspLEI	GCGC	1 cut(s)	541
AspS9I	GGNCC	6 cut(s)	115, 139, 160, 161, 203, 571
AsuC2I	CCSGG	4 cut(s)	344, 503, 564, 565
AsuHPI	GGTGA	1 cut(s)	619
AvaI	CYCGRG	2 cut(s)	359, 563
AvaII	GGWCC	2 cut(s)	139, 203
BaeGI	GKGCMC	1 cut(s)	164
BanII	GRGCYC	2 cut(s)	164, 490
BauI	CACGAG	1 cut(s)	165
BbrPI	CACGTG	1 cut(s)	595
Bbv12I	GWGCWC	1 cut(s)	490
BbvI	GCAGC	3 cut(s)	54, 104, 622
BciT130I	CCWGG	1 cut(s)	137
BcnI	CCSGG	4 cut(s)	344, 503, 564, 565
BcoDI	GTCTC	2 cut(s)	216, 570
BfaI	CTAG	2 cut(s)	39, 75
BfoI	RGCGCY	1 cut(s)	542
BisI	GCNGC	7 cut(s)	68, 93, 584, 608, 611, 614, 641
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	7 cut(s)	69, 94, 585, 609, 612, 615, 642
Bme1390I	CCNGG	5 cut(s)	137, 344, 503, 564, 565
Bme18I	GGWCC	2 cut(s)	139, 203
BmeT110I	CYCGRG	2 cut(s)	359, 563
BmgT120I	GGNCC	6 cut(s)	115, 139, 160, 161, 203, 571
BmiI	GGNNCC	4 cut(s)	117, 134, 162, 268
BmrFI	CCNGG	5 cut(s)	137, 344, 503, 564, 565
BmrI	ACTGGG	1 cut(s)	301
BmsI	GCATC	2 cut(s)	244, 408
BmuI	ACTGGG	1 cut(s)	301
BpmI	CTGGAG	1 cut(s)	119
Bpu1102I	GCTNAGC	1 cut(s)	153
BpuMI	CCSGG	4 cut(s)	344, 503, 564, 565
BsaAI	YACGTR	1 cut(s)	595
BsaBI	GATNNNNATC	2 cut(s)	107, 234
BsaI	GGTCTC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	563
BsaWI	WCCGGW	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 569, 598, 636
Bse1I	ACTGG	2 cut(s)	296, 377
Bse3DI	GCAATG	2 cut(s)	38, 402
Bse8I	GATNNNNATC	2 cut(s)	107, 234
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	563
BseJI	GATNNNNATC	2 cut(s)	107, 234
BseLI	CCNNNNNNNGG	4 cut(s)	148, 569, 598, 636
BseMI	GCAATG	2 cut(s)	38, 402
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	2 cut(s)	296, 377
BseSI	GKGCMC	1 cut(s)	164
BseXI	GCAGC	3 cut(s)	54, 104, 622
BshFI	GGCC	4 cut(s)	116, 126, 162, 573
BsiHKAI	GWGCWC	1 cut(s)	490
BsiHKCI	CYCGRG	2 cut(s)	359, 563
BsiSI	CCGG	4 cut(s)	273, 344, 503, 564
BslI	CCNNNNNNNGG	4 cut(s)	148, 569, 598, 636
BsmAI	GTCTC	2 cut(s)	216, 570
BsnI	GGCC	4 cut(s)	116, 126, 162, 573
Bso31I	GGTCTC	1 cut(s)	216
BsoBI	CYCGRG	2 cut(s)	359, 563
Bsp120I	GGGCCC	1 cut(s)	160
Bsp1286I	GDGCHC	2 cut(s)	164, 490
Bsp143I	GATC	5 cut(s)	19, 217, 229, 331, 424
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	8 cut(s)	65, 356, 407, 584, 607, 613, 616, 640
BspANI	GGCC	4 cut(s)	116, 126, 162, 573
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	4 cut(s)	117, 134, 162, 268
BspPI	GGATC	2 cut(s)	339, 432
BspTNI	GGTCTC	1 cut(s)	216
BsrBI	CCGCTC	3 cut(s)	358, 586, 607
BsrDI	GCAATG	2 cut(s)	38, 402
BsrI	ACTGG	2 cut(s)	296, 377
BssECI	CCNNGG	1 cut(s)	563
BssMI	GATC	5 cut(s)	19, 217, 229, 331, 424
BssSI	CACGAG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	251
Bst6I	CTCTTC	1 cut(s)	414
BstBAI	YACGTR	1 cut(s)	595
BstC8I	GCNNGC	3 cut(s)	72, 309, 409
BstDEI	CTNAG	1 cut(s)	153
BstH2I	RGCGCY	1 cut(s)	542
BstHHI	GCGC	1 cut(s)	541
BstKTI	GATC	5 cut(s)	22, 220, 232, 334, 427
BstMAI	GTCTC	2 cut(s)	216, 570
BstMBI	GATC	5 cut(s)	19, 217, 229, 331, 424
BstMWI	GCNNNNNNNGC	4 cut(s)	613, 622, 631, 640
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	2 cut(s)	74, 458
BstSCI	CCNGG	5 cut(s)	135, 342, 501, 562, 563
BstSLI	GKGCMC	1 cut(s)	164
BstV1I	GCAGC	3 cut(s)	54, 104, 622
BsuRI	GGCC	4 cut(s)	116, 126, 162, 573
Cac8I	GCNNGC	3 cut(s)	72, 309, 409
CfoI	GCGC	1 cut(s)	541
Cfr13I	GGNCC	6 cut(s)	115, 139, 160, 161, 203, 571
Cfr9I	CCCGGG	1 cut(s)	563
Csp6I	GTAC	2 cut(s)	413, 436
CviAII	CATG	2 cut(s)	71, 455
CviQI	GTAC	2 cut(s)	413, 436
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	5 cut(s)	21, 219, 231, 333, 426
DpnII	GATC	5 cut(s)	19, 217, 229, 331, 424
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Ecl136II	GAGCTC	1 cut(s)	488
Eco24I	GRGCYC	2 cut(s)	164, 490
Eco31I	GGTCTC	1 cut(s)	216
Eco47I	GGWCC	2 cut(s)	139, 203
Eco53kI	GAGCTC	1 cut(s)	488
Eco72I	CACGTG	1 cut(s)	595
Eco88I	CYCGRG	2 cut(s)	359, 563
EcoICRI	GAGCTC	1 cut(s)	488
EcoO109I	RGGNCCY	2 cut(s)	139, 160
EcoRII	CCWGG	1 cut(s)	135
EcoT38I	GRGCYC	2 cut(s)	164, 490
FaeI	CATG	2 cut(s)	74, 458
FaiI	YATR	2 cut(s)	72, 456
FatI	CATG	2 cut(s)	70, 454
FauI	CCCGC	2 cut(s)	400, 609
Fnu4HI	GCNGC	7 cut(s)	68, 93, 584, 608, 611, 614, 641
FriOI	GRGCYC	2 cut(s)	164, 490
Fsp4HI	GCNGC	7 cut(s)	68, 93, 584, 608, 611, 614, 641
FspBI	CTAG	2 cut(s)	39, 75
GlaI	GCGC	1 cut(s)	540
GluI	GCNGC	7 cut(s)	68, 93, 584, 608, 611, 614, 641
GsuI	CTGGAG	1 cut(s)	119
HaeII	RGCGCY	1 cut(s)	542
HaeIII	GGCC	4 cut(s)	116, 126, 162, 573
HapII	CCGG	4 cut(s)	273, 344, 503, 564
HhaI	GCGC	1 cut(s)	541
Hin1II	CATG	2 cut(s)	74, 458
Hin6I	GCGC	1 cut(s)	539
HinP1I	GCGC	1 cut(s)	539
HinfI	GANTC	4 cut(s)	59, 301, 493, 515
HpaII	CCGG	4 cut(s)	273, 344, 503, 564
HphI	GGTGA	1 cut(s)	619
Hpy188I	TCNGA	4 cut(s)	247, 331, 492, 520
Hpy188III	TCNNGA	3 cut(s)	23, 221, 257
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	594
HpyCH4V	TGCA	2 cut(s)	70, 235
HpyF10VI	GCNNNNNNNGC	4 cut(s)	613, 622, 631, 640
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	594
Hsp92II	CATG	2 cut(s)	74, 458
HspAI	GCGC	1 cut(s)	539
Kzo9I	GATC	5 cut(s)	19, 217, 229, 331, 424
LmnI	GCTCC	4 cut(s)	138, 485, 493, 604
Lsp1109I	GCAGC	3 cut(s)	54, 104, 622
LweI	GCATC	2 cut(s)	244, 408
MaeI	CTAG	2 cut(s)	39, 75
MaeII	ACGT	1 cut(s)	594
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	5 cut(s)	21, 219, 231, 333, 426
MbiI	CCGCTC	3 cut(s)	358, 586, 607
MboI	GATC	5 cut(s)	19, 217, 229, 331, 424
MboII	GAAGA	4 cut(s)	431, 487, 490, 556
MhlI	GDGCHC	2 cut(s)	164, 490
MmeI	TCCRAC	3 cut(s)	309, 543, 626
MnlI	CCTC	8 cut(s)	5, 43, 152, 194, 280, 415, 592, 640
MspA1I	CMGCKG	2 cut(s)	67, 613
MspI	CCGG	4 cut(s)	273, 344, 503, 564
MspR9I	CCNGG	5 cut(s)	137, 344, 503, 564, 565
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	4 cut(s)	613, 622, 631, 640
NciI	CCSGG	4 cut(s)	344, 503, 564, 565
NdeII	GATC	5 cut(s)	19, 217, 229, 331, 424
NlaIII	CATG	2 cut(s)	74, 458
NlaIV	GGNNCC	4 cut(s)	117, 134, 162, 268
NmeAIII	GCCGAG	1 cut(s)	599
NspI	RCATGY	2 cut(s)	74, 458
PaeI	GCATGC	1 cut(s)	74
PaeR7I	CTCGAG	1 cut(s)	359
PciI	ACATGT	1 cut(s)	454
PcsI	WCGNNNNNNNCGW	2 cut(s)	96, 516
PfeI	GAWTC	4 cut(s)	59, 301, 493, 515
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	7 cut(s)	69, 94, 585, 609, 612, 615, 642
PmaCI	CACGTG	1 cut(s)	595
PmlI	CACGTG	1 cut(s)	595
Ppu21I	YACGTR	1 cut(s)	595
PpuMI	RGGWCCY	1 cut(s)	139
PscI	ACATGT	1 cut(s)	454
Psp124BI	GAGCTC	1 cut(s)	490
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	135
PspCI	CACGTG	1 cut(s)	595
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	4 cut(s)	117, 134, 162, 268
PspOMI	GGGCCC	1 cut(s)	160
PspPI	GGNCC	6 cut(s)	115, 139, 160, 161, 203, 571
PspPPI	RGGWCCY	1 cut(s)	139
PspXI	VCTCGAGB	1 cut(s)	359
RsaI	GTAC	2 cut(s)	414, 437
RsaNI	GTAC	2 cut(s)	413, 436
SacI	GAGCTC	1 cut(s)	490
SatI	GCNGC	7 cut(s)	68, 93, 584, 608, 611, 614, 641
Sau3AI	GATC	5 cut(s)	19, 217, 229, 331, 424
Sau96I	GGNCC	6 cut(s)	115, 139, 160, 161, 203, 571
ScrFI	CCNGG	5 cut(s)	137, 344, 503, 564, 565
SduI	GDGCHC	2 cut(s)	164, 490
SetI	ASST	9 cut(s)	16, 144, 228, 434, 490, 597, 603, 627, 632
SfaNI	GCATC	2 cut(s)	244, 408
Sfr274I	CTCGAG	1 cut(s)	359
SinI	GGWCC	2 cut(s)	139, 203
SlaI	CTCGAG	1 cut(s)	359
SmaI	CCCGGG	1 cut(s)	565
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
SphI	GCATGC	1 cut(s)	74
SsiI	CCGC	8 cut(s)	65, 356, 407, 584, 607, 613, 616, 640
SspMI	CTAG	2 cut(s)	39, 75
SstI	GAGCTC	1 cut(s)	490
StyD4I	CCNGG	5 cut(s)	135, 342, 501, 562, 563
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	597
TaqI	TCGA	2 cut(s)	220, 360
TauI	GCSGC	4 cut(s)	586, 610, 616, 643
TfiI	GAWTC	4 cut(s)	59, 301, 493, 515
TseI	GCWGC	3 cut(s)	67, 92, 610
TspDTI	ATGAA	2 cut(s)	355, 545
TspGWI	ACGGA	1 cut(s)	498
TspMI	CCCGGG	1 cut(s)	563
VpaK11BI	GGWCC	2 cut(s)	139, 203
XceI	RCATGY	2 cut(s)	74, 458
XhoI	CTCGAG	1 cut(s)	359
XmaI	CCCGGG	1 cut(s)	563
XspI	CTAG	2 cut(s)	39, 75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.