MD00G1137900.v1.1
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000212
Physical Location & Seq
Reverse (-)
29847970 .. 29849418
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1137900.v1.1.491

Sequence Viewer

Length: 867 bp
ATGGAGAAAAAGAAGACGGCGATAATTAGCAAGAGAGATGAAGACGTGGTGGACTTGGACATGCGGCTGCTGGCCGACAATCATGACGGCACTGGCGATGCTACTCATGACTCCGACCGGTTTTACTTTTACGGCGTTTCGTTAACCCAATCTTTTGCTGCAGGCCAAGCGAGTAAAAATATTCTGGGACGTGCATTTTGTTCTGGTGGTTTTGTTTGGCTTGCAGGTGGCCATGAGCTTCAGTTGTACGAGTGTGAGAGAGTGAAGGAAGCAAGAATGCATGGGATTCAAACTTTGGTTTGTATTACTACTTCATGTGGGGTACTTGAACTGGCTTCTTTGGATGTAATCATGCAAGATTGGGGTCTCGTGCACCTATCAAAATCACTCTTTGGATCCGACCAGAAGAACAACAAATTTAAATTACTAGTTCCTGATCCCCTAGAAAAGATTGGATTTCTTTCAGGAGGTCAAAAAGAATTCACCATACAAGGTGGTGCAAATGAACCCATTATCCATACAGACGGGTCATCAACAGGCTCATCTTATGACTCTTTTGGCAATTTCACCCCTGCGAATACAGAGAACCCTCAATCAAAAAAGAGGGGAAGATCATCATCTTCAAACCATGGAGCTACAAGTAGAGAATCACAACTACTGAACCATGTTGAGGCAGAAAAACAAAGGAGGGATAAGCTCAACCATCGAATATGTCTCCTTCGTTCTATTGTTCCCAACGTGTCGGAAATGGACAGGTCCTCTTTGCTCGCTGATGCCGTGGCGTACATGAACCAGCTCAAAGGTAAGGTTGACGAACTGGAGGCCAAAATCCAAGCACAACCACCACAAAAAACCCCTACTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

289

Amino Acids

31.71

Weight (kDa)

6.56

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 33 - 131 1.9e-22 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 221 - 267 2.3e-08 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 215
Acc36I ACCTGC 1 cut(s) 215
AciI CCGC 1 cut(s) 64
AclWI GGATC 3 cut(s) 390, 403, 431
AcoI YGGCCR 2 cut(s) 72, 229
AcsI RAATTY 2 cut(s) 416, 479
AcuI CTGAAG 1 cut(s) 224
AfaI GTAC 3 cut(s) 248, 324, 785
AfiI CCNNNNNNNGG 1 cut(s) 670
AflIII ACRYGT 1 cut(s) 738
AgeI ACCGGT 1 cut(s) 117
AgsI TTSAA 3 cut(s) 290, 329, 624
AhlI ACTAGT 1 cut(s) 427
AjiI CACGTC 2 cut(s) 46, 191
AloI GAACNNNNNNTCC 2 cut(s) 498, 530
AluBI AGCT 4 cut(s) 238, 635, 697, 796
AluI AGCT 4 cut(s) 238, 635, 697, 796
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 2 cut(s) 371, 719
Alw44I GTGCAC 1 cut(s) 371
AlwI GGATC 3 cut(s) 390, 403, 431
AoxI GGCC 4 cut(s) 72, 163, 229, 822
ApaLI GTGCAC 1 cut(s) 371
ApeKI GCWGC 2 cut(s) 67, 158
ApoI RAATTY 2 cut(s) 416, 479
ArsI GACNNNNNNTTYG 2 cut(s) 180, 212
AsiGI ACCGGT 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 756
AsuHPI GGTGA 2 cut(s) 475, 559
AvaII GGWCC 1 cut(s) 756
BaeGI GKGCMC 1 cut(s) 375
BalI TGGCCA 1 cut(s) 231
BamHI GGATCC 1 cut(s) 395
BarI GAAGNNNNNNTAC 2 cut(s) 295, 327
BauI CACGAG 1 cut(s) 368
BbsI GAAGAC 2 cut(s) 20, 48
Bbv12I GWGCWC 1 cut(s) 375
BbvI GCAGC 2 cut(s) 54, 145
BccI CCATC 1 cut(s) 711
BceAI ACGGC 4 cut(s) 33, 103, 148, 761
BcoDI GTCTC 2 cut(s) 371, 719
BcuI ACTAGT 1 cut(s) 427
BfaI CTAG 3 cut(s) 428, 443, 865
BfmI CTRYAG 1 cut(s) 159
BfuAI ACCTGC 1 cut(s) 215
BisI GCNGC 3 cut(s) 65, 68, 159
BlsI GCNGC 3 cut(s) 66, 69, 160
Bme18I GGWCC 1 cut(s) 756
BmgBI CACGTC 2 cut(s) 46, 191
BmgT120I GGNCC 1 cut(s) 756
BmiI GGNNCC 1 cut(s) 397
BmsI GCATC 2 cut(s) 88, 763
BpiI GAAGAC 2 cut(s) 20, 48
BpmI CTGGAG 1 cut(s) 839
BsaBI GATNNNNATC 1 cut(s) 616
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 2 cut(s) 628, 777
BsaWI WCCGGW 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 670
Bse118I RCCGGY 1 cut(s) 117
Bse1I ACTGG 3 cut(s) 97, 336, 822
Bse8I GATNNNNATC 1 cut(s) 616
BseDI CCNNGG 2 cut(s) 628, 777
BseGI GGATG 1 cut(s) 349
BseJI GATNNNNATC 1 cut(s) 616
BseLI CCNNNNNNNGG 1 cut(s) 670
BseNI ACTGG 3 cut(s) 97, 336, 822
BseSI GKGCMC 1 cut(s) 375
BseXI GCAGC 2 cut(s) 54, 145
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 4 cut(s) 74, 165, 231, 824
BshTI ACCGGT 1 cut(s) 117
BsiEI CGRYCG 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 375
BsiSI CCGG 1 cut(s) 118
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 670
BsmAI GTCTC 2 cut(s) 371, 719
BsmFI GGGAC 1 cut(s) 201
BsmI GAATGC 1 cut(s) 282
BsnI GGCC 4 cut(s) 74, 165, 231, 824
Bso31I GGTCTC 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 3 cut(s) 395, 436, 611
Bsp19I CCATGG 1 cut(s) 628
BspACI CCGC 1 cut(s) 64
BspANI GGCC 4 cut(s) 74, 165, 231, 824
BspHI TCATGA 2 cut(s) 82, 106
BspLI GGNNCC 1 cut(s) 397
BspMAI CTGCAG 1 cut(s) 163
BspMI ACCTGC 1 cut(s) 215
BspPI GGATC 3 cut(s) 390, 403, 431
BspTNI GGTCTC 1 cut(s) 371
BsrFI RCCGGY 1 cut(s) 117
BsrI ACTGG 3 cut(s) 97, 336, 822
BssAI RCCGGY 1 cut(s) 117
BssECI CCNNGG 2 cut(s) 628, 777
BssMI GATC 3 cut(s) 395, 436, 611
BssSI CACGAG 1 cut(s) 368
BssT1I CCWWGG 1 cut(s) 628
Bst2BI CACGAG 1 cut(s) 368
BstC8I GCNNGC 4 cut(s) 72, 163, 222, 768
BstDSI CCRYGG 2 cut(s) 628, 777
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 3 cut(s) 398, 439, 614
BstMAI GTCTC 2 cut(s) 371, 719
BstMBI GATC 3 cut(s) 395, 436, 611
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 64
BstSFI CTRYAG 1 cut(s) 159
BstSLI GKGCMC 1 cut(s) 375
BstV1I GCAGC 2 cut(s) 54, 145
BstV2I GAAGAC 2 cut(s) 20, 48
BstX2I RGATCY 1 cut(s) 395
BstYI RGATCY 1 cut(s) 395
BsuRI GGCC 4 cut(s) 74, 165, 231, 824
BtgI CCRYGG 2 cut(s) 628, 777
BtgZI GCGATG 1 cut(s) 111
BtrI CACGTC 2 cut(s) 46, 191
BtsCI GGATG 1 cut(s) 349
BtsIMutI CAGTG 1 cut(s) 90
BveI ACCTGC 1 cut(s) 215
Cac8I GCNNGC 4 cut(s) 72, 163, 222, 768
CciI TCATGA 2 cut(s) 82, 106
Cfr10I RCCGGY 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 756
Csp6I GTAC 3 cut(s) 247, 323, 784
CspAI ACCGGT 1 cut(s) 117
CviQI GTAC 3 cut(s) 247, 323, 784
DpnI GATC 3 cut(s) 397, 438, 613
DpnII GATC 3 cut(s) 395, 436, 611
DraI TTTAAA 1 cut(s) 421
EaeI YGGCCR 2 cut(s) 72, 229
Eco130I CCWWGG 1 cut(s) 628
Eco31I GGTCTC 1 cut(s) 371
Eco47I GGWCC 1 cut(s) 756
Eco57I CTGAAG 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 756
EcoRI GAATTC 1 cut(s) 479
EcoT14I CCWWGG 1 cut(s) 628
EcoT22I ATGCAT 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 628
FaqI GGGAC 1 cut(s) 201
Fnu4HI GCNGC 3 cut(s) 65, 68, 159
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 3 cut(s) 65, 68, 159
FspBI CTAG 3 cut(s) 428, 443, 865
GluI GCNGC 3 cut(s) 65, 68, 159
GsuI CTGGAG 1 cut(s) 839
HaeIII GGCC 4 cut(s) 74, 165, 231, 824
HapII CCGG 1 cut(s) 118
HincII GTYRAC 2 cut(s) 144, 811
HindII GTYRAC 2 cut(s) 144, 811
HinfI GANTC 4 cut(s) 110, 286, 551, 647
HpaI GTTAAC 1 cut(s) 144
HpaII CCGG 1 cut(s) 118
HphI GGTGA 2 cut(s) 475, 559
Hpy166II GTNNAC 4 cut(s) 52, 144, 373, 811
Hpy188I TCNGA 3 cut(s) 115, 400, 745
Hpy188III TCNNGA 4 cut(s) 83, 107, 434, 465
Hpy8I GTNNAC 4 cut(s) 52, 144, 373, 811
HpyAV CCTTC 2 cut(s) 259, 728
HpyCH4IV ACGT 3 cut(s) 45, 190, 738
HpyCH4V TGCA 7 cut(s) 161, 194, 224, 280, 355, 373, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpySE526I ACGT 3 cut(s) 45, 190, 738
KspAI GTTAAC 1 cut(s) 144
Kzo9I GATC 3 cut(s) 395, 436, 611
LmnI GCTCC 1 cut(s) 632
Lsp1109I GCAGC 2 cut(s) 54, 145
LweI GCATC 2 cut(s) 88, 763
MaeI CTAG 3 cut(s) 428, 443, 865
MaeII ACGT 3 cut(s) 45, 190, 738
MalI GATC 3 cut(s) 397, 438, 613
MboI GATC 3 cut(s) 395, 436, 611
MboII GAAGA 5 cut(s) 25, 53, 418, 612, 621
MflI RGATCY 1 cut(s) 395
MhlI GDGCHC 1 cut(s) 375
MlsI TGGCCA 1 cut(s) 231
MluCI AATT 5 cut(s) 24, 416, 422, 479, 562
MluNI TGGCCA 1 cut(s) 231
MlyI GAGTC 2 cut(s) 104, 545
MmeI TCCRAC 3 cut(s) 138, 423, 723
MnlI CCTC 7 cut(s) 461, 597, 600, 664, 681, 769, 814
Mox20I TGGCCA 1 cut(s) 231
Mph1103I ATGCAT 1 cut(s) 282
MscI TGGCCA 1 cut(s) 231
MseI TTAA 2 cut(s) 143, 420
Msp20I TGGCCA 1 cut(s) 231
MspI CCGG 1 cut(s) 118
Mva1269I GAATGC 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 167
NcoI CCATGG 1 cut(s) 628
NdeII GATC 3 cut(s) 395, 436, 611
NlaIV GGNNCC 1 cut(s) 397
NsiI ATGCAT 1 cut(s) 282
NspI RCATGY 1 cut(s) 64
PagI TCATGA 2 cut(s) 82, 106
PaqCI CACCTGC 1 cut(s) 215
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 774
PctI GAATGC 1 cut(s) 282
PfeI GAWTC 2 cut(s) 286, 647
PinAI ACCGGT 1 cut(s) 117
PkrI GCNGC 3 cut(s) 66, 69, 160
PleI GAGTC 2 cut(s) 104, 545
PpsI GAGTC 2 cut(s) 104, 545
PpuMI RGGWCCY 1 cut(s) 756
Psp5II RGGWCCY 1 cut(s) 756
PspN4I GGNNCC 1 cut(s) 397
PspPI GGNCC 1 cut(s) 756
PspPPI RGGWCCY 1 cut(s) 756
PstI CTGCAG 1 cut(s) 163
PsuI RGATCY 1 cut(s) 395
RsaI GTAC 3 cut(s) 248, 324, 785
RsaNI GTAC 3 cut(s) 247, 323, 784
SaqAI TTAA 2 cut(s) 143, 420
SatI GCNGC 3 cut(s) 65, 68, 159
Sau3AI GATC 3 cut(s) 395, 436, 611
Sau96I GGNCC 1 cut(s) 756
SchI GAGTC 2 cut(s) 104, 545
SduI GDGCHC 1 cut(s) 375
SfaNI GCATC 2 cut(s) 88, 763
SfcI CTRYAG 1 cut(s) 159
SinI GGWCC 1 cut(s) 756
SmiI ATTTAAAT 1 cut(s) 421
SpeI ACTAGT 1 cut(s) 427
Sse9I AATT 5 cut(s) 24, 416, 422, 479, 562
SsiI CCGC 1 cut(s) 64
SspI AATATT 1 cut(s) 181
SspMI CTAG 3 cut(s) 428, 443, 865
StyI CCWWGG 1 cut(s) 628
SwaI ATTTAAAT 1 cut(s) 421
TaiI ACGT 3 cut(s) 48, 193, 741
TaqI TCGA 1 cut(s) 706
TasI AATT 5 cut(s) 24, 416, 422, 479, 562
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 2 cut(s) 286, 647
Tru1I TTAA 2 cut(s) 143, 420
Tru9I TTAA 2 cut(s) 143, 420
TscAI CASTG 1 cut(s) 97
TseI GCWGC 2 cut(s) 67, 158
TspDTI ATGAA 4 cut(s) 54, 303, 519, 803
TspRI CASTG 1 cut(s) 97
VneI GTGCAC 1 cut(s) 371
VpaK11BI GGWCC 1 cut(s) 756
XapI RAATTY 2 cut(s) 416, 479
XceI RCATGY 1 cut(s) 64
XspI CTAG 3 cut(s) 428, 443, 865
Zsp2I ATGCAT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.