Rh7AG084900
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000212
Physical Location & Seq
Forward (+)
6353599 .. 6356985
3387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG084900.1

Sequence Viewer

Length: 1383 bp
ATGGGTGAGATTATTTCCTCATGTTCTTCACCCTACAATGTTTATCCAGAAACTACCTCAGCCACATTGCTTCAACAACGCCTCCAATTCATACTTCAGAACCGCCCTGAAACCTGGGTTTACTCCATTTTCTGGAAAGCCTCCAAAGACAGTAACAACGACAACGGCGTTTCTTTGTCATGGGCCGGAGGCCATTTCAGAGGCATTAGAGACTTCTCATCCAAAAAATCAAGCATTCAGAACTCGGATAATAACTACCGACCCAGATTTGGGATGGTCAACAGAGAGATCGAAGCGCTGTGTCATGACGACATGGACTCGGAGAGATTTGAAGACATTAACGGAGACGTGACTGACTCCGAGTGGTTCTACTTCTACACCGTCTCTTTAACACAGTCGTTTGCTGCAGGCCACAATGGGTATTCCAACATTCTGGGCCGTGTGCATTCTTCTAGTGCTTTCATTTGGTTGGCAGGAGATGCTGAGTTTCAGTTCTATGAGTGTGAGAGAGTTAAAGAGGCTCGCATGCATGGAATTCGAACTCTGGTTTGCGTTGCAACTTATAGTGGGGTGCTTGAAGTGGCTTCTTTGGATGTGATTGAAGAAGATTGGGGTTTTGTGCAGCAAGCAAAATCACTTTTTGGAATATCAGACTCCAACTCAAAGCAGGGAAGCCAGGAGGCTCATGTTCACGTTCCTCTGCCCGAAAATGGATTAATGTTTTCAGCAACTCAAAAGCAGTCGAATACACATGGGCGTGGTAAGAGGGAAGTGGCTTTCAATATAGGTGGGTCGTCATCTGATTCAGGGCCTTCTGAAAATATAGAGAATAATCGATCAAAAAAGAGAGGGAGGTCATCAAGCCATGTGAACGGCAGACGAGAATCACCACCACTAAACCATGTGGAGGCAGAGAGACAACGACGTGAAAGGCTGAATCATCGATTCTATGCTCTGAGAGCTGCTGTTCCAAATGTGTCAAGGATGGACAAAGCTTCTTTACTTGCTGATGCAGTTGAGTACATCAATAATCTGAAGACAAAGATTGATAAACTGGAGGCCAAAATCCAAGCACAAACCAAGATACCCAAAGTGGGTAGCACCAACTCCAAAAGTTACAGAGCATCTGCTGTTATGGAAGTGGATGTGAAATTTGTAGGCTCTGAAGCAATGATTCGAGTTCGGAGTACGGATAATGAGGACTATCCATATGCAAGATTGATGAATGCACTCAAAGACCTCGAATTGCATATTTATCATGCAAGCATTTCAAGTGTGAAGGAGTTTATGCTTCAAGATGTTGTGGCACGAGTTCCATTTGGATTCACAAGTGAGGAGGCCATGAGAACCGCCATTATAAAAAGATTGTCAAACTTTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

460

Amino Acids

51.84

Weight (kDa)

7.23

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 24 - 214 3.3e-39 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 300 - 346 1.3e-11 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1358
AccB7I CCANNNNNTGG 1 cut(s) 132
AciI CCGC 2 cut(s) 103, 1350
AcsI RAATTY 2 cut(s) 534, 1151
AcuI CTGAAG 3 cut(s) 80, 1055, 1185
AfaI GTAC 2 cut(s) 1022, 1189
AfeI AGCGCT 1 cut(s) 297
AfiI CCNNNNNNNGG 6 cut(s) 132, 269, 270, 710, 907, 1094
AgsI TTSAA 7 cut(s) 74, 332, 578, 602, 781, 1272, 1295
AjiI CACGTC 2 cut(s) 349, 926
AjnI CCWGG 2 cut(s) 113, 675
AjuI GAANNNNNNNTTGG 2 cut(s) 78, 110
AluBI AGCT 2 cut(s) 962, 995
AluI AGCT 2 cut(s) 962, 995
Alw26I GTCTC 4 cut(s) 204, 339, 388, 910
Aor51HI AGCGCT 1 cut(s) 297
AoxI GGCC 7 cut(s) 183, 190, 409, 436, 809, 1059, 1338
ApeKI GCWGC 3 cut(s) 404, 622, 962
ApoI RAATTY 2 cut(s) 534, 1151
AseI ATTAAT 1 cut(s) 716
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 3 cut(s) 183, 436, 809
AsuHPI GGTGA 3 cut(s) 17, 21, 879
AsuII TTCGAA 1 cut(s) 538
BauI CACGAG 1 cut(s) 1308
BbsI GAAGAC 2 cut(s) 339, 1043
BbvCI CCTCAGC 1 cut(s) 58
BbvI GCAGC 3 cut(s) 391, 634, 949
BccI CCATC 2 cut(s) 268, 979
BceAI ACGGC 3 cut(s) 181, 423, 889
BcgI CGANNNNNNTGC 2 cut(s) 518, 552
BciT130I CCWGG 2 cut(s) 115, 677
BcoDI GTCTC 4 cut(s) 204, 339, 388, 910
BfaI CTAG 2 cut(s) 453, 1381
BfmI CTRYAG 1 cut(s) 405
BfoI RGCGCY 1 cut(s) 299
BisI GCNGC 3 cut(s) 405, 623, 963
BlsI GCNGC 3 cut(s) 406, 624, 964
Bme1390I CCNGG 2 cut(s) 115, 677
BmgBI CACGTC 2 cut(s) 349, 926
BmgT120I GGNCC 3 cut(s) 183, 436, 809
BmrFI CCNGG 2 cut(s) 115, 677
BmsI GCATC 3 cut(s) 469, 1000, 1133
BpiI GAAGAC 2 cut(s) 339, 1043
BpmI CTGGAG 1 cut(s) 1076
Bpu10I CCTNAGC 1 cut(s) 58
Bpu14I TTCGAA 1 cut(s) 538
Bsa29I ATCGAT 2 cut(s) 835, 943
BsaJI CCNNGG 1 cut(s) 114
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 6 cut(s) 132, 269, 270, 710, 907, 1094
Bse1I ACTGG 1 cut(s) 1059
Bse3DI GCAATG 2 cut(s) 65, 1176
BseBI CCWGG 2 cut(s) 115, 677
BseCI ATCGAT 2 cut(s) 835, 943
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 5 cut(s) 218, 279, 598, 990, 1150
BseLI CCNNNNNNNGG 6 cut(s) 132, 269, 270, 710, 907, 1094
BseMI GCAATG 2 cut(s) 65, 1176
BseMII CTCAG 3 cut(s) 72, 474, 947
BseNI ACTGG 1 cut(s) 1059
BseRI GAGGAG 1 cut(s) 1349
BseXI GCAGC 3 cut(s) 391, 634, 949
BsgI GTGCAG 1 cut(s) 641
BshFI GGCC 7 cut(s) 185, 192, 411, 438, 811, 1061, 1340
BshVI ATCGAT 2 cut(s) 835, 943
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 6 cut(s) 132, 269, 270, 710, 907, 1094
BsmAI GTCTC 4 cut(s) 204, 339, 388, 910
BsmBI CGTCTC 2 cut(s) 339, 388
BsmI GAATGC 3 cut(s) 234, 445, 1231
BsnI GGCC 7 cut(s) 185, 192, 411, 438, 811, 1061, 1340
Bsp119I TTCGAA 1 cut(s) 538
Bsp143I GATC 2 cut(s) 288, 836
BspACI CCGC 2 cut(s) 103, 1350
BspANI GGCC 7 cut(s) 185, 192, 411, 438, 811, 1061, 1340
BspCNI CTCAG 3 cut(s) 71, 475, 948
BspDI ATCGAT 2 cut(s) 835, 943
BspHI TCATGA 1 cut(s) 304
BspMAI CTGCAG 1 cut(s) 409
BspT104I TTCGAA 1 cut(s) 538
BsrDI GCAATG 2 cut(s) 65, 1176
BsrI ACTGG 1 cut(s) 1059
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 2 cut(s) 288, 836
BssSI CACGAG 1 cut(s) 1308
Bst2BI CACGAG 1 cut(s) 1308
Bst2UI CCWGG 2 cut(s) 115, 677
Bst4CI ACNGT 3 cut(s) 152, 382, 396
BstAPI GCANNNNNTGC 1 cut(s) 479
BstBI TTCGAA 1 cut(s) 538
BstC8I GCNNGC 5 cut(s) 409, 523, 527, 627, 1264
BstDEI CTNAG 3 cut(s) 58, 483, 956
BstF5I GGATG 5 cut(s) 218, 279, 598, 990, 1150
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 2 cut(s) 291, 839
BstMAI GTCTC 4 cut(s) 204, 339, 388, 910
BstMBI GATC 2 cut(s) 288, 836
BstMWI GCNNNNNNNGC 2 cut(s) 479, 959
BstNI CCWGG 2 cut(s) 115, 677
BstNSI RCATGY 1 cut(s) 529
BstSCI CCNGG 2 cut(s) 113, 675
BstSFI CTRYAG 1 cut(s) 405
BstV1I GCAGC 3 cut(s) 391, 634, 949
BstV2I GAAGAC 2 cut(s) 339, 1043
BstXI CCANNNNNNTGG 1 cut(s) 433
Bsu15I ATCGAT 2 cut(s) 835, 943
BsuRI GGCC 7 cut(s) 185, 192, 411, 438, 811, 1061, 1340
BsuTUI ATCGAT 2 cut(s) 835, 943
BtrI CACGTC 2 cut(s) 349, 926
BtsCI GGATG 5 cut(s) 218, 279, 598, 990, 1150
Cac8I GCNNGC 5 cut(s) 409, 523, 527, 627, 1264
CciI TCATGA 1 cut(s) 304
CfoI GCGC 1 cut(s) 298
Cfr13I GGNCC 3 cut(s) 183, 436, 809
ClaI ATCGAT 2 cut(s) 835, 943
Csp6I GTAC 2 cut(s) 1021, 1188
CspCI CAANNNNNGTGG 2 cut(s) 769, 804
CviQI GTAC 2 cut(s) 1021, 1188
DdeI CTNAG 3 cut(s) 58, 483, 956
DpnI GATC 2 cut(s) 290, 838
DpnII GATC 2 cut(s) 288, 836
Eco47III AGCGCT 1 cut(s) 297
Eco57I CTGAAG 3 cut(s) 80, 1055, 1185
EcoO109I RGGNCCY 1 cut(s) 809
EcoRI GAATTC 1 cut(s) 534
EcoRII CCWGG 2 cut(s) 113, 675
EcoT22I ATGCAT 1 cut(s) 531
Esp3I CGTCTC 2 cut(s) 339, 388
FauNDI CATATG 1 cut(s) 1210
Fnu4HI GCNGC 3 cut(s) 405, 623, 963
FokI GGATG 5 cut(s) 205, 286, 605, 997, 1157
Fsp4HI GCNGC 3 cut(s) 405, 623, 963
FspBI CTAG 2 cut(s) 453, 1381
GlaI GCGC 1 cut(s) 297
GluI GCNGC 3 cut(s) 405, 623, 963
GsuI CTGGAG 1 cut(s) 1076
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 7 cut(s) 185, 192, 411, 438, 811, 1061, 1340
HapII CCGG 1 cut(s) 186
HhaI GCGC 1 cut(s) 298
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HindIII AAGCTT 1 cut(s) 993
HinfI GANTC 9 cut(s) 317, 356, 653, 803, 884, 937, 945, 1174, 1323
HpaII CCGG 1 cut(s) 186
HphI GGTGA 3 cut(s) 17, 21, 879
Hpy166II GTNNAC 4 cut(s) 121, 280, 691, 871
Hpy188III TCNNGA 4 cut(s) 47, 133, 305, 1295
Hpy8I GTNNAC 4 cut(s) 121, 280, 691, 871
Hpy99I CGWCG 1 cut(s) 927
HpyAV CCTTC 2 cut(s) 822, 1273
HpyCH4III ACNGT 3 cut(s) 152, 382, 396
HpyCH4IV ACGT 3 cut(s) 348, 693, 925
HpyF10VI GCNNNNNNNGC 2 cut(s) 479, 959
HpyF3I CTNAG 3 cut(s) 58, 483, 956
HpySE526I ACGT 3 cut(s) 348, 693, 925
HspAI GCGC 1 cut(s) 296
Kzo9I GATC 2 cut(s) 288, 836
Lsp1109I GCAGC 3 cut(s) 391, 634, 949
LweI GCATC 3 cut(s) 469, 1000, 1133
MaeI CTAG 2 cut(s) 453, 1381
MaeII ACGT 3 cut(s) 348, 693, 925
MaeIII GTNAC 3 cut(s) 152, 349, 1115
MalI GATC 2 cut(s) 290, 838
MboI GATC 2 cut(s) 288, 836
MboII GAAGA 6 cut(s) 18, 344, 441, 614, 617, 1048
MluCI AATT 4 cut(s) 86, 534, 1151, 1244
MlyI GAGTC 3 cut(s) 311, 350, 647
MmeI TCCRAC 2 cut(s) 450, 681
Mph1103I ATGCAT 1 cut(s) 531
MseI TTAA 4 cut(s) 339, 389, 513, 716
MslI CAYNNNNRTG 1 cut(s) 756
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 2 cut(s) 115, 677
Mva1269I GAATGC 3 cut(s) 234, 445, 1231
MvaI CCWGG 2 cut(s) 115, 677
MwoI GCNNNNNNNGC 2 cut(s) 479, 959
NdeI CATATG 1 cut(s) 1210
NdeII GATC 2 cut(s) 288, 836
NmuCI GTSAC 1 cut(s) 349
NsiI ATGCAT 1 cut(s) 531
NspI RCATGY 1 cut(s) 529
NspV TTCGAA 1 cut(s) 538
PaeI GCATGC 1 cut(s) 529
PagI TCATGA 1 cut(s) 304
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 3 cut(s) 234, 445, 1231
PfeI GAWTC 6 cut(s) 803, 884, 937, 945, 1174, 1323
PflMI CCANNNNNTGG 1 cut(s) 132
PkrI GCNGC 3 cut(s) 406, 624, 964
PleI GAGTC 3 cut(s) 311, 350, 647
PpsI GAGTC 3 cut(s) 311, 350, 647
PshBI ATTAAT 1 cut(s) 716
PsiI TTATAA 1 cut(s) 1358
Psp6I CCWGG 2 cut(s) 113, 675
PspGI CCWGG 2 cut(s) 113, 675
PspPI GGNCC 3 cut(s) 183, 436, 809
PstI CTGCAG 1 cut(s) 409
RsaI GTAC 2 cut(s) 1022, 1189
RsaNI GTAC 2 cut(s) 1021, 1188
RseI CAYNNNNRTG 1 cut(s) 756
SaqAI TTAA 4 cut(s) 339, 389, 513, 716
SatI GCNGC 3 cut(s) 405, 623, 963
Sau3AI GATC 2 cut(s) 288, 836
Sau96I GGNCC 3 cut(s) 183, 436, 809
SchI GAGTC 3 cut(s) 311, 350, 647
ScrFI CCNGG 2 cut(s) 115, 677
SfaNI GCATC 3 cut(s) 469, 1000, 1133
SfcI CTRYAG 1 cut(s) 405
SfuI TTCGAA 1 cut(s) 538
SmiMI CAYNNNNRTG 1 cut(s) 756
SphI GCATGC 1 cut(s) 529
Sse9I AATT 4 cut(s) 86, 534, 1151, 1244
SsiI CCGC 2 cut(s) 103, 1350
SspMI CTAG 2 cut(s) 453, 1381
StyD4I CCNGG 2 cut(s) 113, 675
TaaI ACNGT 3 cut(s) 152, 382, 396
TaiI ACGT 3 cut(s) 351, 696, 928
TaqI TCGA 7 cut(s) 291, 538, 743, 835, 943, 1177, 1242
TasI AATT 4 cut(s) 86, 534, 1151, 1244
TatI WGTACW 1 cut(s) 1020
TfiI GAWTC 6 cut(s) 803, 884, 937, 945, 1174, 1323
Tru1I TTAA 4 cut(s) 339, 389, 513, 716
Tru9I TTAA 4 cut(s) 339, 389, 513, 716
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 3 cut(s) 404, 622, 962
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 3 cut(s) 79, 451, 1238
TspGWI ACGGA 2 cut(s) 357, 1205
Van91I CCANNNNNTGG 1 cut(s) 132
VspI ATTAAT 1 cut(s) 716
XapI RAATTY 2 cut(s) 534, 1151
XceI RCATGY 1 cut(s) 529
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XspI CTAG 2 cut(s) 453, 1381
Zsp2I ATGCAT 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.