MD14G1126900.v1.1
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000212
Physical Location & Seq
Reverse (-)
20181581 .. 20184043
2463 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1126900.v1.1.491

Sequence Viewer

Length: 1542 bp
ATGGACGAAATCATATCCTCATGTTCAACTAATTTCTGCCAAGAAACCTCCCCCACATTTCAACAGCGCCTACAGTTCATAGTTCAGAACAGGCCTGAGTGGTGGGTGTATTCCATTTTCTGGCAAGCCTCCAAAGACAGCATTAGTGACCAGGTTTCCCTGTCATGGGCCGGCGGCCATTTTCGGAACACTCGCGATCACTTGGCATCGAAAAGAAGCAGCCGAATAGCCAACAATTACCAACTCAAATTTGGGTTCAACAATGTGGAGAGAAAGAGGGTGAATAACCGGGAAGTTGAATCACTTTTGCATGATGACATGGTGGATTTGGACATGAGGCTCGTGGATCATGGAGATGTCACTGACTCCGAGTGGTTTTACTTTTATACCGTTTCTTTAACCCAGTCATTCTCCGGAAGCCACGGTAATAATAGTACCAATATTCTCGGCAGGGCATTTGGTTCTGGTGGGTTTGTTTGGCTTGCAGGTGACCATGAATTTCAGTTTTATGAGTGTGAGAGAGTTAAAGAAGCAAGAATGCATGGAATCCAAACTTTGGTTTGCATTGCAACTCCTTGTGGGGTACTTGAACTGGCCTCTTTGGATGTGATCAAAGAAGATTGGGGTCTAGTGCATTTATCAAAGTCGCTGTTCGGATCAGATGACAACATCAACATGAACAACAACAACAGGCTCTCAAAACGGCAGACCAGCCGTGACGGCGATGTACTTGTTCCTATCCTAGAAAATGGACTGTTTTCAGCAGCTCAAAAGGAATTGATCCCACAAGATCAAGGTGGTGGTATAAACGAAGCTGCACCTATCAATCTAGGAGGGTCGTCGCCAGAATCACCTTCTGATTCTGTTGGGAACTTCACCTCCGAGAATACGGAGAACACGATTCGGTCGAAAAAGCGAGGAAGATCATCAAAACATGGAGCTGCAAATAGAGAATCACAATTGTTAAACCACGTTGAGGCCGAGAGACAGAGGAGGGAGAAGCTCAACCACCGATTCTATGTCCTCCGGTCAGTTGTTCCCAATGTGTCAAAAATGGACAGGTCCTCTTTGCTTGCCGATGCCGTGGCCTACATCAATCAACTCAAATCAAAAGTTCAGGAATTGGAGGCCAAAGTCCAAGAACAACCACAAAAGCCTAAAGCGGGCAATAATCCAAGCAACAATCTTGATCATCACTCCAGCCAAAGCACCAGCTCCATAGTTGACCAGCATCATTATTCTAATAAAAATAATAATAGTATTAATAGTAGTAATAGTGATAGGGCAGCTTCTGCGGTTATGGAAGTGGATGTGAAGATTTCGGCGTCAGAAGCCATGATACATGTTCAGTGTCCGGATGAAGACTACCCATATGCTAAGTTGATGAATGCACTCAAAAGCCTAGGGCTACAAGTTTACCATGCAAGCATATCAAGCGTGAAAGAGTTGATGATTCAAGATGTTGTGGCAAGACTGCCTTATGGGTTCATTGGTGGTAAGGAAGCATTGAGAAATGGTATTATAAAAGGCTGGTACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

514

Amino Acids

57.52

Weight (kDa)

6.42

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 21 - 218 1.8e-41 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 323 - 369 2.1e-10 Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant PF22754 435 - 489 3.4e-07 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1523
AarI CACCTGC 1 cut(s) 476
Acc36I ACCTGC 1 cut(s) 476
Acc65I GGTACC 1 cut(s) 1533
AccB1I GGYRCC 1 cut(s) 1533
AccB7I CCANNNNNTGG 2 cut(s) 120, 556
AccII CGCG 1 cut(s) 195
AccIII TCCGGA 2 cut(s) 413, 1354
AciI CCGC 3 cut(s) 174, 1163, 1295
AclWI GGATC 3 cut(s) 354, 664, 775
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 2 cut(s) 248, 497
AcyI GRCGYC 1 cut(s) 1325
AfaI GTAC 4 cut(s) 436, 585, 729, 1535
AfiI CCNNNNNNNGG 6 cut(s) 120, 165, 166, 556, 976, 1163
AflIII ACRYGT 1 cut(s) 1342
AgsI TTSAA 6 cut(s) 27, 62, 259, 299, 590, 1457
AjnI CCWGG 1 cut(s) 150
AloI GAACNNNNNNTCC 2 cut(s) 863, 895
AluBI AGCT 6 cut(s) 767, 815, 941, 1003, 1215, 1289
AluI AGCT 6 cut(s) 767, 815, 941, 1003, 1215, 1289
Alw26I GTCTC 1 cut(s) 979
AlwI GGATC 3 cut(s) 354, 664, 775
AlwNI CAGNNNCTG 1 cut(s) 1292
Aor13HI TCCGGA 2 cut(s) 413, 1354
AoxI GGCC 7 cut(s) 92, 168, 175, 594, 978, 1086, 1128
ApeKI GCWGC 5 cut(s) 219, 764, 815, 941, 1286
ApoI RAATTY 2 cut(s) 248, 497
AseI ATTAAT 1 cut(s) 1263
Asp718I GGTACC 1 cut(s) 1533
AspA2I CCTAGG 1 cut(s) 1402
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 2 cut(s) 168, 1062
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 4 cut(s) 292, 500, 843, 868
AvaII GGWCC 1 cut(s) 1062
AvrII CCTAGG 1 cut(s) 1402
BanI GGYRCC 1 cut(s) 1533
BarI GAAGNNNNNNTAC 2 cut(s) 1323, 1355
BauI CACGAG 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 1368
BbvI GCAGC 5 cut(s) 231, 776, 802, 928, 1298
BceAI ACGGC 4 cut(s) 699, 719, 736, 1067
BciT130I CCWGG 1 cut(s) 152
BclI TGATCA 2 cut(s) 609, 1189
BcnI CCSGG 1 cut(s) 290
BcoDI GTCTC 1 cut(s) 979
BfaI CTAG 4 cut(s) 629, 743, 830, 1403
BfmI CTRYAG 1 cut(s) 71
BfoI RGCGCY 1 cut(s) 70
BfuAI ACCTGC 1 cut(s) 476
BglI GCCNNNNNGGC 1 cut(s) 720
BisI GCNGC 6 cut(s) 175, 220, 765, 816, 942, 1287
BlnI CCTAGG 1 cut(s) 1402
BlsI GCNGC 6 cut(s) 176, 221, 766, 817, 943, 1288
Bme1390I CCNGG 2 cut(s) 152, 290
Bme18I GGWCC 1 cut(s) 1062
BmgT120I GGNCC 2 cut(s) 168, 1062
BmiI GGNNCC 1 cut(s) 1535
BmrFI CCNGG 2 cut(s) 152, 290
BmrI ACTGGG 1 cut(s) 397
BmsI GCATC 3 cut(s) 215, 1069, 1240
BmuI ACTGGG 1 cut(s) 397
BpiI GAAGAC 1 cut(s) 1368
BpmI CTGGAG 1 cut(s) 1183
BpuMI CCSGG 1 cut(s) 290
BsaHI GRCGYC 1 cut(s) 1325
BsaJI CCNNGG 3 cut(s) 421, 1083, 1402
BsaWI WCCGGW 3 cut(s) 413, 1026, 1354
BsaXI ACNNNNNCTCC 2 cut(s) 863, 893
Bsc4I CCNNNNNNNGG 6 cut(s) 120, 165, 166, 556, 976, 1163
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 2 cut(s) 403, 597
Bse3DI GCAATG 1 cut(s) 564
BseAI TCCGGA 2 cut(s) 413, 1354
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 3 cut(s) 421, 1083, 1402
BseGI GGATG 3 cut(s) 610, 1315, 1363
BseLI CCNNNNNNNGG 6 cut(s) 120, 165, 166, 556, 976, 1163
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 2 cut(s) 403, 597
BseRI GAGGAG 1 cut(s) 1006
BseXI GCAGC 5 cut(s) 231, 776, 802, 928, 1298
BsgI GTGCAG 1 cut(s) 801
Bsh1236I CGCG 1 cut(s) 195
Bsh1285I CGRYCG 1 cut(s) 908
BshFI GGCC 7 cut(s) 94, 170, 177, 596, 980, 1088, 1130
BshNI GGYRCC 1 cut(s) 1533
BsiEI CGRYCG 1 cut(s) 908
BsiSI CCGG 5 cut(s) 171, 289, 414, 1027, 1355
BslI CCNNNNNNNGG 6 cut(s) 120, 165, 166, 556, 976, 1163
BsmAI GTCTC 1 cut(s) 979
BsmI GAATGC 2 cut(s) 543, 1393
BsnI GGCC 7 cut(s) 94, 170, 177, 596, 980, 1088, 1130
Bsp13I TCCGGA 2 cut(s) 413, 1354
Bsp143I GATC 8 cut(s) 196, 346, 609, 656, 780, 790, 923, 1189
Bsp68I TCGCGA 1 cut(s) 195
BspACI CCGC 3 cut(s) 174, 1163, 1295
BspANI GGCC 7 cut(s) 94, 170, 177, 596, 980, 1088, 1130
BspCNI CTCAG 1 cut(s) 88
BspEI TCCGGA 2 cut(s) 413, 1354
BspFNI CGCG 1 cut(s) 195
BspLI GGNNCC 1 cut(s) 1535
BspMI ACCTGC 1 cut(s) 476
BspPI GGATC 3 cut(s) 354, 664, 775
BspT107I GGYRCC 1 cut(s) 1533
BsrDI GCAATG 1 cut(s) 564
BsrFI RCCGGY 1 cut(s) 170
BsrI ACTGG 2 cut(s) 403, 597
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 3 cut(s) 421, 1083, 1402
BssMI GATC 8 cut(s) 196, 346, 609, 656, 780, 790, 923, 1189
BssNI GRCGYC 1 cut(s) 1325
BssSI CACGAG 1 cut(s) 341
BssT1I CCWWGG 1 cut(s) 1402
Bst2BI CACGAG 1 cut(s) 341
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 4 cut(s) 75, 391, 425, 756
BstACI GRCGYC 1 cut(s) 1325
BstAPI GCANNNNNTGC 1 cut(s) 1292
BstC8I GCNNGC 6 cut(s) 126, 172, 483, 1074, 1165, 1426
BstDEI CTNAG 2 cut(s) 96, 1377
BstDSI CCRYGG 2 cut(s) 421, 1083
BstEII GGTNACC 1 cut(s) 488
BstF5I GGATG 3 cut(s) 610, 1315, 1363
BstFNI CGCG 1 cut(s) 195
BstH2I RGCGCY 1 cut(s) 70
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 8 cut(s) 199, 349, 612, 659, 783, 793, 926, 1192
BstMAI GTCTC 1 cut(s) 979
BstMBI GATC 8 cut(s) 196, 346, 609, 656, 780, 790, 923, 1189
BstMCI CGRYCG 1 cut(s) 908
BstMWI GCNNNNNNNGC 4 cut(s) 720, 1292, 1331, 1434
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 1346
BstPI GGTNACC 1 cut(s) 488
BstSCI CCNGG 2 cut(s) 150, 288
BstSFI CTRYAG 1 cut(s) 71
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 5 cut(s) 231, 776, 802, 928, 1298
BstV2I GAAGAC 1 cut(s) 1368
BsuRI GGCC 7 cut(s) 94, 170, 177, 596, 980, 1088, 1130
BtgI CCRYGG 2 cut(s) 421, 1083
BtgZI GCGATG 1 cut(s) 738
BtsCI GGATG 3 cut(s) 610, 1315, 1363
BtsIMutI CAGTG 2 cut(s) 360, 1355
BtuMI TCGCGA 1 cut(s) 195
BveI ACCTGC 1 cut(s) 476
Cac8I GCNNGC 6 cut(s) 126, 172, 483, 1074, 1165, 1426
CaiI CAGNNNCTG 1 cut(s) 1292
CfoI GCGC 1 cut(s) 69
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 2 cut(s) 168, 1062
CseI GACGC 1 cut(s) 1314
CsiI ACCWGGT 1 cut(s) 150
Csp6I GTAC 4 cut(s) 435, 584, 728, 1534
CviQI GTAC 4 cut(s) 435, 584, 728, 1534
DdeI CTNAG 2 cut(s) 96, 1377
DpnI GATC 8 cut(s) 198, 348, 611, 658, 782, 792, 925, 1191
DpnII GATC 8 cut(s) 196, 346, 609, 656, 780, 790, 923, 1189
EaeI YGGCCR 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 1402
Eco147I AGGCCT 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 1062
Eco91I GGTNACC 1 cut(s) 488
EcoO109I RGGNCCY 1 cut(s) 1062
EcoO65I GGTNACC 1 cut(s) 488
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 1402
EcoT22I ATGCAT 1 cut(s) 543
ErhI CCWWGG 1 cut(s) 1402
FalI AAGNNNNNCTT 2 cut(s) 1462, 1494
FauI CCCGC 1 cut(s) 1156
FauNDI CATATG 1 cut(s) 1372
FbaI TGATCA 2 cut(s) 609, 1189
Fnu4HI GCNGC 6 cut(s) 175, 220, 765, 816, 942, 1287
FokI GGATG 3 cut(s) 617, 1322, 1370
Fsp4HI GCNGC 6 cut(s) 175, 220, 765, 816, 942, 1287
FspBI CTAG 4 cut(s) 629, 743, 830, 1403
GlaI GCGC 1 cut(s) 68
GluI GCNGC 6 cut(s) 175, 220, 765, 816, 942, 1287
GsuI CTGGAG 1 cut(s) 1183
HaeII RGCGCY 1 cut(s) 70
HaeIII GGCC 7 cut(s) 94, 170, 177, 596, 980, 1088, 1130
HapII CCGG 5 cut(s) 171, 289, 414, 1027, 1355
HgaI GACGC 1 cut(s) 1314
HhaI GCGC 1 cut(s) 69
Hin1I GRCGYC 1 cut(s) 1325
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HincII GTYRAC 1 cut(s) 1225
HindII GTYRAC 1 cut(s) 1225
HinfI GANTC 9 cut(s) 299, 365, 546, 848, 860, 901, 953, 1014, 1453
HpaII CCGG 5 cut(s) 171, 289, 414, 1027, 1355
HphI GGTGA 4 cut(s) 292, 500, 843, 868
Hpy166II GTNNAC 2 cut(s) 1225, 1417
Hpy188I TCNGA 8 cut(s) 87, 186, 370, 656, 661, 859, 883, 1330
Hpy188III TCNNGA 6 cut(s) 194, 414, 1118, 1187, 1355, 1457
Hpy8I GTNNAC 2 cut(s) 1225, 1417
Hpy99I CGWCG 1 cut(s) 844
HpyAV CCTTC 1 cut(s) 864
HpyCH4III ACNGT 4 cut(s) 75, 391, 425, 756
HpyCH4IV ACGT 1 cut(s) 972
HpyF10VI GCNNNNNNNGC 4 cut(s) 720, 1292, 1331, 1434
HpyF3I CTNAG 2 cut(s) 96, 1377
HpySE526I ACGT 1 cut(s) 972
Hsp92I GRCGYC 1 cut(s) 1325
HspAI GCGC 1 cut(s) 67
Kpn2I TCCGGA 2 cut(s) 413, 1354
KpnI GGTACC 1 cut(s) 1537
KroI GCCGGC 1 cut(s) 170
KroNI GCCGGC 1 cut(s) 172
Ksp22I TGATCA 2 cut(s) 609, 1189
Kzo9I GATC 8 cut(s) 196, 346, 609, 656, 780, 790, 923, 1189
LmnI GCTCC 2 cut(s) 938, 1220
Lsp1109I GCAGC 5 cut(s) 231, 776, 802, 928, 1298
LweI GCATC 3 cut(s) 215, 1069, 1240
MabI ACCWGGT 1 cut(s) 150
MaeI CTAG 4 cut(s) 629, 743, 830, 1403
MaeII ACGT 1 cut(s) 972
MaeIII GTNAC 4 cut(s) 146, 358, 488, 716
MalI GATC 8 cut(s) 198, 348, 611, 658, 782, 792, 925, 1191
MboI GATC 8 cut(s) 196, 346, 609, 656, 780, 790, 923, 1189
MboII GAAGA 4 cut(s) 629, 933, 1327, 1373
MfeI CAATTG 1 cut(s) 959
MluCI AATT 7 cut(s) 31, 235, 248, 497, 776, 959, 1121
MlyI GAGTC 1 cut(s) 359
Mph1103I ATGCAT 1 cut(s) 543
MroI TCCGGA 2 cut(s) 413, 1354
MroNI GCCGGC 1 cut(s) 170
MseI TTAA 5 cut(s) 398, 525, 965, 1263, 1540
MslI CAYNNNNRTG 2 cut(s) 354, 674
MspI CCGG 5 cut(s) 171, 289, 414, 1027, 1355
MspR9I CCNGG 2 cut(s) 152, 290
MunI CAATTG 1 cut(s) 959
Mva1269I GAATGC 2 cut(s) 543, 1393
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 4 cut(s) 720, 1292, 1331, 1434
NaeI GCCGGC 1 cut(s) 172
NciI CCSGG 1 cut(s) 290
NdeI CATATG 1 cut(s) 1372
NdeII GATC 8 cut(s) 196, 346, 609, 656, 780, 790, 923, 1189
NgoMIV GCCGGC 1 cut(s) 170
NlaIV GGNNCC 1 cut(s) 1535
NmeAIII GCCGAG 2 cut(s) 426, 1006
NmuCI GTSAC 4 cut(s) 146, 358, 488, 716
NruI TCGCGA 1 cut(s) 195
NsiI ATGCAT 1 cut(s) 543
NspI RCATGY 1 cut(s) 1346
PaqCI CACCTGC 1 cut(s) 476
PceI AGGCCT 1 cut(s) 94
PciI ACATGT 1 cut(s) 1342
PcsI WCGNNNNNNNCGW 3 cut(s) 896, 905, 978
PctI GAATGC 2 cut(s) 543, 1393
PdiI GCCGGC 1 cut(s) 172
PfeI GAWTC 8 cut(s) 299, 546, 848, 860, 901, 953, 1014, 1453
PflMI CCANNNNNTGG 2 cut(s) 120, 556
PkrI GCNGC 6 cut(s) 176, 221, 766, 817, 943, 1288
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
PpuMI RGGWCCY 1 cut(s) 1062
PscI ACATGT 1 cut(s) 1342
PshBI ATTAAT 1 cut(s) 1263
PsiI TTATAA 1 cut(s) 1523
Psp5II RGGWCCY 1 cut(s) 1062
Psp6I CCWGG 1 cut(s) 150
PspEI GGTNACC 1 cut(s) 488
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 1535
PspPI GGNCC 2 cut(s) 168, 1062
PspPPI RGGWCCY 1 cut(s) 1062
PstNI CAGNNNCTG 1 cut(s) 1292
RruI TCGCGA 1 cut(s) 195
RsaI GTAC 4 cut(s) 436, 585, 729, 1535
RsaNI GTAC 4 cut(s) 435, 584, 728, 1534
RseI CAYNNNNRTG 2 cut(s) 354, 674
SaqAI TTAA 5 cut(s) 398, 525, 965, 1263, 1540
SatI GCNGC 6 cut(s) 175, 220, 765, 816, 942, 1287
Sau3AI GATC 8 cut(s) 196, 346, 609, 656, 780, 790, 923, 1189
Sau96I GGNCC 2 cut(s) 168, 1062
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 2 cut(s) 152, 290
SexAI ACCWGGT 1 cut(s) 150
SfaNI GCATC 3 cut(s) 215, 1069, 1240
SfcI CTRYAG 1 cut(s) 71
SinI GGWCC 1 cut(s) 1062
SmiMI CAYNNNNRTG 2 cut(s) 354, 674
Sse9I AATT 7 cut(s) 31, 235, 248, 497, 776, 959, 1121
SseBI AGGCCT 1 cut(s) 94
SsiI CCGC 3 cut(s) 174, 1163, 1295
SspI AATATT 1 cut(s) 442
SspMI CTAG 4 cut(s) 629, 743, 830, 1403
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 2 cut(s) 150, 288
StyI CCWWGG 1 cut(s) 1402
TaaI ACNGT 4 cut(s) 75, 391, 425, 756
TaiI ACGT 1 cut(s) 975
TaqI TCGA 2 cut(s) 209, 908
TaqII GACCGA 1 cut(s) 894
TasI AATT 7 cut(s) 31, 235, 248, 497, 776, 959, 1121
TatI WGTACW 1 cut(s) 727
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 8 cut(s) 299, 546, 848, 860, 901, 953, 1014, 1453
Tru1I TTAA 5 cut(s) 398, 525, 965, 1263, 1540
Tru9I TTAA 5 cut(s) 398, 525, 965, 1263, 1540
TscAI CASTG 2 cut(s) 367, 1355
TseFI GTSAC 4 cut(s) 146, 358, 488, 716
TseI GCWGC 5 cut(s) 219, 764, 815, 941, 1286
Tsp45I GTSAC 4 cut(s) 146, 358, 488, 716
TspDTI ATGAA 6 cut(s) 67, 510, 692, 1374, 1400, 1477
TspGWI ACGGA 1 cut(s) 905
TspRI CASTG 2 cut(s) 367, 1355
Van91I CCANNNNNTGG 2 cut(s) 120, 556
VpaK11BI GGWCC 1 cut(s) 1062
VspI ATTAAT 1 cut(s) 1263
XapI RAATTY 2 cut(s) 248, 497
XceI RCATGY 1 cut(s) 1346
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
XmaJI CCTAGG 1 cut(s) 1402
XspI CTAG 4 cut(s) 629, 743, 830, 1403
Zsp2I ATGCAT 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.