Rroxscaffold_3G00247010
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000212
Physical Location & Seq
Reverse (-)
40344247 .. 40346724
2478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00247010.1

Sequence Viewer

Length: 1209 bp
ATGGAAGCCTGTTTTTCACCCCATAATCTTTGTCAAGAAACCTCTGCAGCCACACTTCAGCAACACCTCCAGTTCATACTTCAAAACCGTCCTGAGTTTTGGGTCTACTCCATTTTCTGGCAAGCCTCCAAAGACGGCCACAATGCCATGTCGTTATCATGGGCCGGTGGTCATTTCCGAGGGACCAGAGACTTCTCATCCAAAACAACAACCACTAATAAGCTAGATAACAATTACCAACCAACAATAGGGTTCGATCTGGAGACACCAAAGAAGGGGATCAACAAAGAAGTCGAAGCTTTGTTCCATGAAGACATGAACATGGACGGACTGTTCGACATTAATGGAGATGTCACTGACTCGGAGTGGTTTTACTTCTACACCGTTTCTAATTTGACACAGTCCTTTGCTGCAGGCCTTGAGAGTAACAACATTCTTGGCCATGCATTTTGTTCTGGTGCTTTTGTTTGCGTCTCAAACTCAAAGCAGGGTCATGTTCATGTTCCTCAGCTACAAGATGGGATATTTTCAAGATCGGTTCAGAAGGAGTGGACCACACAAGGTGATATGAGAAAAACTGTCAACCTAAGTGGCTCTTCATCTGATTCCGGGCCTTATGAAAGCACATCAAACACTAGATTAAAAGAGATAGGAAGATCTGATAAGCATGTCAATGCCAACCAAGATTCACCAATAAGCCATTCGAAGGTAGAGAGACAACGCCGGGATAAGCTTAATAATCTATTTTATGCCCTTAGGTCCGTTGTTCCTAATGTCTCAAAGATGGATAAAGCTTCGACACTATCTGATGCAATTGTATACATCAATAAATTGAAGACAACGATCGAGGAGTTGGAGGCCAAAATCCAAGCAAAACCCAAAGTAAGCATCATGATTGACAATATTCTTGATAGCCAAAGCACCAGCACTGCTATGGAGGTGGATGTGGATGTGAAAATTGTAGGGTCGGAAGCCATAATCCGAGTTTGGTGTCCGAATAATCAGGATGATCCATGTGCTAGATTGATGAATGCACTCAGAGACCTTGAATTACAAATTCATCGTGCAAGCATATCTAGTATGAATGAGTTGACACTTCAAGATGTTACGCTCATGCTTGCTGGTATACGTCACAGAAAGATCACAAAACCAGTGTTTGCCACTAGTGTTCGCCAAATGTGCAATGCTGGATTGCTGGGATTAGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

402

Amino Acids

44.94

Weight (kDa)

6.32

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 19 - 163 1.6e-16 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 233 - 279 8e-13 Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant PF22754 315 - 369 4.1e-06 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 117
AccI GTMKAC 3 cut(s) 105, 819, 1126
AclWI GGATC 2 cut(s) 287, 1004
AcoI YGGCCR 2 cut(s) 136, 439
AcsI RAATTY 1 cut(s) 1056
AcuI CTGAAG 1 cut(s) 41
AdeI CACNNNGTG 1 cut(s) 563
AfiI CCNNNNNNNGG 4 cut(s) 117, 248, 275, 706
AgsI TTSAA 5 cut(s) 83, 531, 835, 1049, 1100
AhlI ACTAGT 1 cut(s) 1163
AjuI GAANNNNNNNTTGG 2 cut(s) 685, 717
AloI GAACNNNNNNTCC 2 cut(s) 317, 349
AluBI AGCT 5 cut(s) 223, 299, 511, 733, 794
AluI AGCT 5 cut(s) 223, 299, 511, 733, 794
Alw26I GTCTC 6 cut(s) 183, 257, 478, 709, 781, 1035
AlwI GGATC 2 cut(s) 287, 1004
AoxI GGCC 6 cut(s) 136, 162, 415, 439, 611, 858
ApeKI GCWGC 2 cut(s) 47, 410
ApoI RAATTY 1 cut(s) 1056
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AseI ATTAAT 1 cut(s) 342
AspS9I GGNCC 5 cut(s) 162, 183, 552, 611, 759
AsuC2I CCSGG 2 cut(s) 610, 725
AsuHPI GGTGA 3 cut(s) 9, 575, 681
AsuII TTCGAA 1 cut(s) 704
AvaII GGWCC 3 cut(s) 183, 552, 759
AxyI CCTNAGG 1 cut(s) 755
BalI TGGCCA 1 cut(s) 441
BbsI GAAGAC 2 cut(s) 318, 842
BbvCI CCTCAGC 1 cut(s) 507
BbvI GCAGC 2 cut(s) 59, 397
BccI CCATC 2 cut(s) 512, 778
BceAI ACGGC 1 cut(s) 151
BcnI CCSGG 2 cut(s) 610, 725
BcoDI GTCTC 6 cut(s) 183, 257, 478, 709, 781, 1035
BcuI ACTAGT 1 cut(s) 1163
BfaI CTAG 5 cut(s) 224, 636, 1020, 1077, 1164
BfmI CTRYAG 2 cut(s) 45, 411
BglII AGATCT 1 cut(s) 656
BisI GCNGC 2 cut(s) 48, 411
BlsI GCNGC 2 cut(s) 49, 412
Bme1390I CCNGG 2 cut(s) 610, 725
Bme18I GGWCC 3 cut(s) 183, 552, 759
BmgT120I GGNCC 5 cut(s) 162, 183, 552, 611, 759
BmiI GGNNCC 1 cut(s) 184
BmrFI CCNGG 2 cut(s) 610, 725
BmsI GCATC 2 cut(s) 799, 897
BpiI GAAGAC 2 cut(s) 318, 842
BpmI CTGGAG 2 cut(s) 53, 281
Bpu10I CCTNAGC 1 cut(s) 507
Bpu14I TTCGAA 1 cut(s) 704
BpuEI CTTGAG 1 cut(s) 440
BpuMI CCSGG 2 cut(s) 610, 725
BsaI GGTCTC 1 cut(s) 1035
BsaJI CCNNGG 1 cut(s) 178
Bsc4I CCNNNNNNNGG 4 cut(s) 117, 248, 275, 706
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 2 cut(s) 70, 1151
Bse21I CCTNAGG 1 cut(s) 755
Bse3DI GCAATG 1 cut(s) 1189
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 4 cut(s) 197, 949, 955, 1012
BseLI CCNNNNNNNGG 4 cut(s) 117, 248, 275, 706
BseMI GCAATG 1 cut(s) 1189
BseMII CTCAG 3 cut(s) 84, 521, 1051
BseNI ACTGG 2 cut(s) 70, 1151
BseRI GAGGAG 1 cut(s) 863
BseXI GCAGC 2 cut(s) 59, 397
BseYI CCCAGC 1 cut(s) 1195
Bsh1285I CGRYCG 1 cut(s) 846
BshFI GGCC 6 cut(s) 138, 164, 417, 441, 613, 860
BsiEI CGRYCG 1 cut(s) 846
BsiSI CCGG 3 cut(s) 165, 609, 724
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 4 cut(s) 117, 248, 275, 706
BsmAI GTCTC 6 cut(s) 183, 257, 478, 709, 781, 1035
BsmBI CGTCTC 1 cut(s) 478
BsmFI GGGAC 1 cut(s) 196
BsmI GAATGC 1 cut(s) 1036
BsnI GGCC 6 cut(s) 138, 164, 417, 441, 613, 860
Bso31I GGTCTC 1 cut(s) 1035
Bsp119I TTCGAA 1 cut(s) 704
Bsp143I GATC 7 cut(s) 256, 279, 533, 656, 843, 1009, 1140
BspANI GGCC 6 cut(s) 138, 164, 417, 441, 613, 860
BspCNI CTCAG 3 cut(s) 85, 520, 1050
BspHI TCATGA 1 cut(s) 891
BspLI GGNNCC 1 cut(s) 184
BspMAI CTGCAG 2 cut(s) 49, 415
BspPI GGATC 2 cut(s) 287, 1004
BspQI GCTCTTC 1 cut(s) 601
BspT104I TTCGAA 1 cut(s) 704
BspTNI GGTCTC 1 cut(s) 1035
BsrDI GCAATG 1 cut(s) 1189
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 2 cut(s) 70, 1151
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 7 cut(s) 256, 279, 533, 656, 843, 1009, 1140
BssNAI GTATAC 2 cut(s) 820, 1127
Bst1107I GTATAC 2 cut(s) 820, 1127
Bst4CI ACNGT 5 cut(s) 89, 333, 385, 402, 580
Bst6I CTCTTC 1 cut(s) 601
BstBI TTCGAA 1 cut(s) 704
BstC8I GCNNGC 4 cut(s) 123, 415, 1069, 1119
BstDEI CTNAG 5 cut(s) 93, 507, 587, 755, 1037
BstF5I GGATG 4 cut(s) 197, 949, 955, 1012
BstKTI GATC 7 cut(s) 259, 282, 536, 659, 846, 1012, 1143
BstMAI GTCTC 6 cut(s) 183, 257, 478, 709, 781, 1035
BstMBI GATC 7 cut(s) 256, 279, 533, 656, 843, 1009, 1140
BstMCI CGRYCG 1 cut(s) 846
BstMWI GCNNNNNNNGC 1 cut(s) 1179
BstNSI RCATGY 1 cut(s) 671
BstSCI CCNGG 2 cut(s) 608, 723
BstSFI CTRYAG 2 cut(s) 45, 411
BstV1I GCAGC 2 cut(s) 59, 397
BstV2I GAAGAC 2 cut(s) 318, 842
BstX2I RGATCY 1 cut(s) 656
BstYI RGATCY 1 cut(s) 656
BstZ17I GTATAC 2 cut(s) 820, 1127
Bsu36I CCTNAGG 1 cut(s) 755
BsuRI GGCC 6 cut(s) 138, 164, 417, 441, 613, 860
BtsCI GGATG 4 cut(s) 197, 949, 955, 1012
BtsI GCAGTG 1 cut(s) 927
BtsIMutI CAGTG 3 cut(s) 354, 927, 1158
Cac8I GCNNGC 4 cut(s) 123, 415, 1069, 1119
CciI TCATGA 1 cut(s) 891
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 5 cut(s) 162, 183, 552, 611, 759
CseI GACGC 1 cut(s) 460
CspCI CAANNNNNGTGG 2 cut(s) 571, 606
DdeI CTNAG 5 cut(s) 93, 507, 587, 755, 1037
DpnI GATC 7 cut(s) 258, 281, 535, 658, 845, 1011, 1142
DpnII GATC 7 cut(s) 256, 279, 533, 656, 843, 1009, 1140
DraIII CACNNNGTG 1 cut(s) 563
EaeI YGGCCR 2 cut(s) 136, 439
Eam1104I CTCTTC 1 cut(s) 601
EarI CTCTTC 1 cut(s) 601
Eco147I AGGCCT 1 cut(s) 417
Eco31I GGTCTC 1 cut(s) 1035
Eco47I GGWCC 3 cut(s) 183, 552, 759
Eco57I CTGAAG 1 cut(s) 41
Eco81I CCTNAGG 1 cut(s) 755
EcoT22I ATGCAT 1 cut(s) 448
Esp3I CGTCTC 1 cut(s) 478
FalI AAGNNNNNCTT 2 cut(s) 580, 612
FaqI GGGAC 1 cut(s) 196
FblI GTMKAC 3 cut(s) 105, 819, 1126
Fnu4HI GCNGC 2 cut(s) 48, 411
FokI GGATG 4 cut(s) 184, 956, 962, 1019
Fsp4HI GCNGC 2 cut(s) 48, 411
FspBI CTAG 5 cut(s) 224, 636, 1020, 1077, 1164
GluI GCNGC 2 cut(s) 48, 411
GsaI CCCAGC 1 cut(s) 1199
GsuI CTGGAG 2 cut(s) 53, 281
HaeIII GGCC 6 cut(s) 138, 164, 417, 441, 613, 860
HapII CCGG 3 cut(s) 165, 609, 724
HgaI GACGC 1 cut(s) 460
HincII GTYRAC 2 cut(s) 583, 1092
HindII GTYRAC 2 cut(s) 583, 1092
HindIII AAGCTT 3 cut(s) 297, 731, 792
HinfI GANTC 3 cut(s) 359, 605, 686
HpaII CCGG 3 cut(s) 165, 609, 724
HphI GGTGA 3 cut(s) 9, 575, 681
Hpy166II GTNNAC 6 cut(s) 106, 552, 583, 820, 1092, 1127
Hpy188III TCNNGA 8 cut(s) 35, 92, 260, 531, 892, 908, 1004, 1100
Hpy8I GTNNAC 6 cut(s) 106, 552, 583, 820, 1092, 1127
HpyAV CCTTC 3 cut(s) 268, 538, 700
HpyCH4III ACNGT 5 cut(s) 89, 333, 385, 402, 580
HpyCH4IV ACGT 1 cut(s) 1129
HpyCH4V TGCA 7 cut(s) 47, 413, 446, 812, 1034, 1067, 1182
HpyF10VI GCNNNNNNNGC 1 cut(s) 1179
HpyF3I CTNAG 5 cut(s) 93, 507, 587, 755, 1037
HpySE526I ACGT 1 cut(s) 1129
Kzo9I GATC 7 cut(s) 256, 279, 533, 656, 843, 1009, 1140
LguI GCTCTTC 1 cut(s) 601
Lsp1109I GCAGC 2 cut(s) 59, 397
LweI GCATC 2 cut(s) 799, 897
MaeI CTAG 5 cut(s) 224, 636, 1020, 1077, 1164
MaeII ACGT 1 cut(s) 1129
MaeIII GTNAC 4 cut(s) 352, 425, 1105, 1130
MalI GATC 7 cut(s) 258, 281, 535, 658, 845, 1011, 1142
MboI GATC 7 cut(s) 256, 279, 533, 656, 843, 1009, 1140
MboII GAAGA 4 cut(s) 323, 588, 666, 847
MfeI CAATTG 1 cut(s) 813
MflI RGATCY 1 cut(s) 656
MlsI TGGCCA 1 cut(s) 441
MluCI AATT 7 cut(s) 232, 391, 813, 830, 957, 1049, 1056
MluNI TGGCCA 1 cut(s) 441
MlyI GAGTC 1 cut(s) 353
MmeI TCCRAC 2 cut(s) 834, 948
MnlI CCTC 8 cut(s) 52, 77, 136, 173, 516, 841, 850, 931
Mox20I TGGCCA 1 cut(s) 441
Mph1103I ATGCAT 1 cut(s) 448
MscI TGGCCA 1 cut(s) 441
MseI TTAA 3 cut(s) 342, 641, 735
MslI CAYNNNNRTG 4 cut(s) 320, 498, 672, 932
Msp20I TGGCCA 1 cut(s) 441
MspI CCGG 3 cut(s) 165, 609, 724
MspR9I CCNGG 2 cut(s) 610, 725
MunI CAATTG 1 cut(s) 813
Mva1269I GAATGC 1 cut(s) 1036
MwoI GCNNNNNNNGC 1 cut(s) 1179
NciI CCSGG 2 cut(s) 610, 725
NdeII GATC 7 cut(s) 256, 279, 533, 656, 843, 1009, 1140
NlaIV GGNNCC 1 cut(s) 184
NmuCI GTSAC 2 cut(s) 352, 1130
NsiI ATGCAT 1 cut(s) 448
NspI RCATGY 1 cut(s) 671
NspV TTCGAA 1 cut(s) 704
PagI TCATGA 1 cut(s) 891
PceI AGGCCT 1 cut(s) 417
PciSI GCTCTTC 1 cut(s) 601
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PctI GAATGC 1 cut(s) 1036
PfeI GAWTC 2 cut(s) 605, 686
PflFI GACNNNGTC 1 cut(s) 400
PflMI CCANNNNNTGG 1 cut(s) 117
PkrI GCNGC 2 cut(s) 49, 412
Ple19I CGATCG 1 cut(s) 846
PleI GAGTC 1 cut(s) 353
PpsI GAGTC 1 cut(s) 353
PshBI ATTAAT 1 cut(s) 342
PspFI CCCAGC 1 cut(s) 1195
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 5 cut(s) 162, 183, 552, 611, 759
PstI CTGCAG 2 cut(s) 49, 415
PsuI RGATCY 1 cut(s) 656
PsyI GACNNNGTC 1 cut(s) 400
PvuI CGATCG 1 cut(s) 846
RseI CAYNNNNRTG 4 cut(s) 320, 498, 672, 932
SapI GCTCTTC 1 cut(s) 601
SaqAI TTAA 3 cut(s) 342, 641, 735
SatI GCNGC 2 cut(s) 48, 411
Sau3AI GATC 7 cut(s) 256, 279, 533, 656, 843, 1009, 1140
Sau96I GGNCC 5 cut(s) 162, 183, 552, 611, 759
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 2 cut(s) 610, 725
SfaNI GCATC 2 cut(s) 799, 897
SfcI CTRYAG 2 cut(s) 45, 411
SfuI TTCGAA 1 cut(s) 704
SinI GGWCC 3 cut(s) 183, 552, 759
SmiMI CAYNNNNRTG 4 cut(s) 320, 498, 672, 932
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
SpeI ACTAGT 1 cut(s) 1163
Sse9I AATT 7 cut(s) 232, 391, 813, 830, 957, 1049, 1056
SseBI AGGCCT 1 cut(s) 417
SspI AATATT 1 cut(s) 904
SspMI CTAG 5 cut(s) 224, 636, 1020, 1077, 1164
StuI AGGCCT 1 cut(s) 417
StyD4I CCNGG 2 cut(s) 608, 723
TaaI ACNGT 5 cut(s) 89, 333, 385, 402, 580
TaiI ACGT 1 cut(s) 1132
TaqI TCGA 6 cut(s) 255, 294, 336, 704, 797, 846
TasI AATT 7 cut(s) 232, 391, 813, 830, 957, 1049, 1056
TfiI GAWTC 2 cut(s) 605, 686
Tru1I TTAA 3 cut(s) 342, 641, 735
Tru9I TTAA 3 cut(s) 342, 641, 735
TscAI CASTG 3 cut(s) 361, 934, 1158
TseFI GTSAC 2 cut(s) 352, 1130
TseI GCWGC 2 cut(s) 47, 410
Tsp45I GTSAC 2 cut(s) 352, 1130
TspDTI ATGAA 9 cut(s) 64, 324, 332, 488, 588, 633, 1043, 1049, 1097
TspGWI ACGGA 2 cut(s) 342, 751
TspRI CASTG 3 cut(s) 361, 934, 1158
Tth111I GACNNNGTC 1 cut(s) 400
Van91I CCANNNNNTGG 1 cut(s) 117
VpaK11BI GGWCC 3 cut(s) 183, 552, 759
VspI ATTAAT 1 cut(s) 342
XapI RAATTY 1 cut(s) 1056
XceI RCATGY 1 cut(s) 671
XcmI CCANNNNNNNNNTGG 1 cut(s) 931
XmiI GTMKAC 3 cut(s) 105, 819, 1126
XspI CTAG 5 cut(s) 224, 636, 1020, 1077, 1164
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.