Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037114.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 635

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037114.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

gccttcggctccgggacctcaatctggctgagcggggcccacgagcttcagttcaacaactgtgagagagccaaagaggcccaaatccaggggatcgagaccttaatctgcatcccaacttcctccggtgttcttgaaatgggttccttcggtttgatcagagagaactgggggttgatccagcaagccaagtcgttgttcgggtcggatcagcccgacctagaaacaagaccgctcgagttcatcaaccggaacttctccatttttgacctcggcatcattgccggcgtgcaggaagaggatcacaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

103

Amino Acids

11.35

Weight (kDa)

4.47

Isoelectric Point (pI)

27.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	33, 235
AciI	CCGC	2 cut(s)	33, 233
AclWI	GGATC	4 cut(s)	101, 172, 216, 309
AcuI	CTGAAG	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	24, 88
AgsI	TTSAA	2 cut(s)	55, 137
AjnI	CCWGG	1 cut(s)	87
AjuI	GAANNNNNNNTTGG	2 cut(s)	182, 214
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	4 cut(s)	101, 172, 216, 309
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	2 cut(s)	36, 78
ApaI	GGGCCC	1 cut(s)	40
AspS9I	GGNCC	4 cut(s)	15, 36, 37, 79
AsuC2I	CCSGG	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	15
BaeGI	GKGCMC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	40
BauI	CACGAG	1 cut(s)	41
BciT130I	CCWGG	1 cut(s)	89
BclI	TGATCA	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	2 cut(s)	221, 310
BglI	GCCNNNNNGGC	1 cut(s)	77
BlpI	GCTNAGC	1 cut(s)	29
Bme1390I	CCNGG	2 cut(s)	13, 89
Bme18I	GGWCC	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	4 cut(s)	15, 36, 37, 79
BmiI	GGNNCC	5 cut(s)	10, 16, 37, 38, 145
BmrFI	CCNGG	2 cut(s)	13, 89
BmrI	ACTGGG	1 cut(s)	178
BmsI	GCATC	2 cut(s)	120, 285
BmuI	ACTGGG	1 cut(s)	178
Bpu1102I	GCTNAGC	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	13
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	88, 271
BsaWI	WCCGGW	2 cut(s)	125, 249
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 88
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	173
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	2 cut(s)	88, 271
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	24, 88
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	1 cut(s)	173
BseSI	GKGCMC	1 cut(s)	40
BsgI	GTGCAG	1 cut(s)	311
BshFI	GGCC	2 cut(s)	38, 80
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	4 cut(s)	12, 126, 250, 285
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	2 cut(s)	24, 88
BsmAI	GTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	2 cut(s)	38, 80
Bso31I	GGTCTC	1 cut(s)	92
BsoBI	CYCGRG	1 cut(s)	236
Bsp120I	GGGCCC	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	5 cut(s)	93, 156, 177, 208, 301
Bsp1720I	GCTNAGC	1 cut(s)	29
BspACI	CCGC	2 cut(s)	33, 233
BspANI	GGCC	2 cut(s)	38, 80
BspCNI	CTCAG	1 cut(s)	21
BspLI	GGNNCC	5 cut(s)	10, 16, 37, 38, 145
BspPI	GGATC	4 cut(s)	101, 172, 216, 309
BspTNI	GGTCTC	1 cut(s)	92
BsrBI	CCGCTC	2 cut(s)	33, 235
BsrDI	GCAATG	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	88, 271
BssMI	GATC	5 cut(s)	93, 156, 177, 208, 301
BssSI	CACGAG	1 cut(s)	41
Bst2BI	CACGAG	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	62
Bst6I	CTCTTC	1 cut(s)	291
BstC8I	GCNNGC	3 cut(s)	186, 286, 290
BstDEI	CTNAG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	111
BstKTI	GATC	5 cut(s)	96, 159, 180, 211, 304
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	5 cut(s)	93, 156, 177, 208, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	2 cut(s)	11, 87
BstSLI	GKGCMC	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	38, 80
BtsCI	GGATG	1 cut(s)	111
Cac8I	GCNNGC	3 cut(s)	186, 286, 290
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	4 cut(s)	15, 36, 37, 79
CviJI	RGCY	8 cut(s)	9, 28, 38, 46, 71, 80, 188, 214
CviKI_1	RGCY	8 cut(s)	9, 28, 38, 46, 71, 80, 188, 214
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	5 cut(s)	95, 158, 179, 210, 303
DpnII	GATC	5 cut(s)	93, 156, 177, 208, 301
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	15
Eco57I	CTGAAG	1 cut(s)	32
Eco88I	CYCGRG	1 cut(s)	236
EcoO109I	RGGNCCY	2 cut(s)	15, 36
EcoRII	CCWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	40
FaqI	GGGAC	1 cut(s)	28
FauI	CCCGC	1 cut(s)	26
FbaI	TGATCA	1 cut(s)	156
FokI	GGATG	1 cut(s)	98
FriOI	GRGCYC	1 cut(s)	40
FspBI	CTAG	2 cut(s)	221, 310
HaeIII	GGCC	2 cut(s)	38, 80
HapII	CCGG	4 cut(s)	12, 126, 250, 285
HpaII	CCGG	4 cut(s)	12, 126, 250, 285
Hpy188I	TCNGA	2 cut(s)	161, 208
Hpy188III	TCNNGA	2 cut(s)	97, 134
HpyAV	CCTTC	2 cut(s)	13, 157
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4V	TGCA	2 cut(s)	111, 292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	29
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	5 cut(s)	93, 156, 177, 208, 301
LmnI	GCTCC	1 cut(s)	14
LweI	GCATC	2 cut(s)	120, 285
MaeI	CTAG	2 cut(s)	221, 310
MalI	GATC	5 cut(s)	95, 158, 179, 210, 303
MbiI	CCGCTC	2 cut(s)	33, 235
MboI	GATC	5 cut(s)	93, 156, 177, 208, 301
MboII	GAAGA	1 cut(s)	308
MhlI	GDGCHC	1 cut(s)	40
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	5 cut(s)	28, 70, 133, 281, 292
MroNI	GCCGGC	1 cut(s)	284
MseI	TTAA	1 cut(s)	104
MspI	CCGG	4 cut(s)	12, 126, 250, 285
MspR9I	CCNGG	2 cut(s)	13, 89
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	77
NaeI	GCCGGC	1 cut(s)	286
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	5 cut(s)	93, 156, 177, 208, 301
NgoMIV	GCCGGC	1 cut(s)	284
NlaIV	GGNNCC	5 cut(s)	10, 16, 37, 38, 145
NmeAIII	GCCGAG	1 cut(s)	252
PaeR7I	CTCGAG	1 cut(s)	236
PdiI	GCCGGC	1 cut(s)	286
PfoI	TCCNGGA	1 cut(s)	11
PpuMI	RGGWCCY	1 cut(s)	15
Psp5II	RGGWCCY	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	5 cut(s)	10, 16, 37, 38, 145
PspOMI	GGGCCC	1 cut(s)	36
PspPI	GGNCC	4 cut(s)	15, 36, 37, 79
PspPPI	RGGWCCY	1 cut(s)	15
PspXI	VCTCGAGB	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	104
Sau3AI	GATC	5 cut(s)	93, 156, 177, 208, 301
Sau96I	GGNCC	4 cut(s)	15, 36, 37, 79
ScrFI	CCNGG	2 cut(s)	13, 89
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	5 cut(s)	20, 48, 104, 222, 273
SfaNI	GCATC	2 cut(s)	120, 285
Sfr274I	CTCGAG	1 cut(s)	236
SinI	GGWCC	1 cut(s)	15
SlaI	CTCGAG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
SsiI	CCGC	2 cut(s)	33, 233
SspMI	CTAG	2 cut(s)	221, 310
StyD4I	CCNGG	2 cut(s)	11, 87
TaaI	ACNGT	1 cut(s)	62
TaqI	TCGA	2 cut(s)	96, 237
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	15
XhoI	CTCGAG	1 cut(s)	236
XspI	CTAG	2 cut(s)	221, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.