Rorug06G0479300
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000212
Physical Location & Seq
Reverse (-)
60091845 .. 60094046
2202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0479300.1

Sequence Viewer

Length: 510 bp
ATGTCAGACGCCGAGAGCACCGTGGAAGCCGTCGATTCCCAAGAGCCACCCAAGCAGCAGGAATCACAGGATCGGAAGCCCAGCTCCGGCGCCGCCTACAGCCTTTGGCCGCCGACCGACCGCACCCGCAACGCCGTCGTCGACCGTCTCATCGAGACCCTCACCACTCCCTCCCCTCTCTCCAGACGCTACGGCACCTTGTCCGCCGACGAGGCCAACGAGGAGTCCCGCCGAATCGAGCAAGACGCCTTCGCCGCCGCCGGGGGATCCGCCGCCACGGAGGTCAGCGGCGAGACCGGGATGAAGATCCTGCAGATCTACTCCAAGGAGATCAGCAAGCGCATGCTCGAGGTCGTCAAGGCTAAGAACGCCGCTGCTTCTGCTGCTGAAAACGGCGCGTCCGAGACCGCCGAGACTGGTAGCACCGCCGCCGCCGACGATGCCGCCGCCGCCGTTCCCAGTGAGGATGTCAAGACTGAGGAATTGAAGACTGAGACTGAGTCAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

169

Amino Acids

17.83

Weight (kDa)

4.48

Isoelectric Point (pI)

64.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WPP PF13943 34 - 128 1.8e-34 WPP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 89, 194
AccI GTMKAC 1 cut(s) 141
AccII CGCG 1 cut(s) 398
AclWI GGATC 4 cut(s) 78, 261, 274, 301
AcoI YGGCCR 1 cut(s) 107
AcyI GRCGYC 3 cut(s) 9, 90, 246
AfiI CCNNNNNNNGG 2 cut(s) 86, 261
AgsI TTSAA 1 cut(s) 487
AluBI AGCT 1 cut(s) 84
AluI AGCT 1 cut(s) 84
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 6 cut(s) 149, 152, 287, 398, 407, 488
AlwI GGATC 4 cut(s) 78, 261, 274, 301
Ama87I CYCGRG 1 cut(s) 347
AoxI GGCC 2 cut(s) 107, 213
ApeKI GCWGC 3 cut(s) 55, 374, 383
AspLEI GCGC 3 cut(s) 92, 342, 398
AsuC2I CCSGG 2 cut(s) 262, 298
AsuHPI GGTGA 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 347
BamHI GGATCC 1 cut(s) 266
BanI GGYRCC 2 cut(s) 89, 194
BbsI GAAGAC 1 cut(s) 494
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 3 cut(s) 67, 361, 370
BceAI ACGGC 5 cut(s) 14, 119, 208, 409, 437
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BcnI CCSGG 2 cut(s) 262, 298
BcoDI GTCTC 6 cut(s) 149, 152, 287, 398, 407, 488
BfmI CTRYAG 2 cut(s) 97, 311
BfoI RGCGCY 1 cut(s) 93
BglI GCCNNNNNGGC 1 cut(s) 212
BglII AGATCT 1 cut(s) 315
Bme1390I CCNGG 2 cut(s) 262, 298
BmeT110I CYCGRG 1 cut(s) 347
BmiI GGNNCC 3 cut(s) 91, 196, 268
BmrFI CCNGG 2 cut(s) 262, 298
BmrI ACTGGG 1 cut(s) 453
BmsI GCATC 1 cut(s) 430
BmuI ACTGGG 1 cut(s) 453
BpiI GAAGAC 1 cut(s) 494
BpmI CTGGAG 1 cut(s) 166
BpuMI CCSGG 2 cut(s) 262, 298
BsaBI GATNNNNATC 1 cut(s) 305
BsaHI GRCGYC 3 cut(s) 9, 90, 246
BsaI GGTCTC 3 cut(s) 149, 287, 398
BsaJI CCNNGG 4 cut(s) 21, 261, 276, 324
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 261
Bse1I ACTGG 2 cut(s) 421, 459
Bse8I GATNNNNATC 1 cut(s) 305
BseDI CCNNGG 4 cut(s) 21, 261, 276, 324
BseGI GGATG 2 cut(s) 306, 472
BseJI GATNNNNATC 1 cut(s) 305
BseLI CCNNNNNNNGG 2 cut(s) 86, 261
BseMII CTCAG 3 cut(s) 468, 483, 489
BseNI ACTGG 2 cut(s) 421, 459
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 3 cut(s) 67, 361, 370
BseYI CCCAGC 1 cut(s) 80
Bsh1236I CGCG 1 cut(s) 398
Bsh1285I CGRYCG 3 cut(s) 117, 121, 145
BshFI GGCC 2 cut(s) 109, 215
BshNI GGYRCC 2 cut(s) 89, 194
BsiEI CGRYCG 3 cut(s) 117, 121, 145
BsiHKAI GWGCWC 1 cut(s) 20
BsiHKCI CYCGRG 1 cut(s) 347
BsiSI CCGG 3 cut(s) 87, 261, 297
BslFI GGGAC 1 cut(s) 211
BslI CCNNNNNNNGG 2 cut(s) 86, 261
BsmAI GTCTC 6 cut(s) 149, 152, 287, 398, 407, 488
BsmBI CGTCTC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 211
BsnI GGCC 2 cut(s) 109, 215
Bso31I GGTCTC 3 cut(s) 149, 287, 398
BsoBI CYCGRG 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 5 cut(s) 70, 266, 306, 315, 330
BspANI GGCC 2 cut(s) 109, 215
BspCNI CTCAG 3 cut(s) 469, 484, 490
BspFNI CGCG 1 cut(s) 398
BspLI GGNNCC 3 cut(s) 91, 196, 268
BspMAI CTGCAG 1 cut(s) 315
BspPI GGATC 4 cut(s) 78, 261, 274, 301
BspT107I GGYRCC 2 cut(s) 89, 194
BspTNI GGTCTC 3 cut(s) 149, 287, 398
BsrI ACTGG 2 cut(s) 421, 459
BssECI CCNNGG 4 cut(s) 21, 261, 276, 324
BssMI GATC 5 cut(s) 70, 266, 306, 315, 330
BssNI GRCGYC 3 cut(s) 9, 90, 246
BssT1I CCWWGG 1 cut(s) 324
Bst4CI ACNGT 2 cut(s) 22, 146
BstACI GRCGYC 3 cut(s) 9, 90, 246
BstC8I GCNNGC 2 cut(s) 338, 344
BstDEI CTNAG 4 cut(s) 363, 477, 492, 498
BstDSI CCRYGG 2 cut(s) 21, 276
BstF5I GGATG 2 cut(s) 306, 472
BstFNI CGCG 1 cut(s) 398
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 3 cut(s) 92, 342, 398
BstKTI GATC 5 cut(s) 73, 269, 309, 318, 333
BstMAI GTCTC 6 cut(s) 149, 152, 287, 398, 407, 488
BstMBI GATC 5 cut(s) 70, 266, 306, 315, 330
BstMCI CGRYCG 3 cut(s) 117, 121, 145
BstMWI GCNNNNNNNGC 8 cut(s) 52, 212, 254, 368, 380, 383, 440, 449
BstNSI RCATGY 1 cut(s) 346
BstSCI CCNGG 2 cut(s) 260, 296
BstSFI CTRYAG 2 cut(s) 97, 311
BstUI CGCG 1 cut(s) 398
BstV1I GCAGC 3 cut(s) 67, 361, 370
BstV2I GAAGAC 1 cut(s) 494
BstX2I RGATCY 3 cut(s) 266, 306, 315
BstYI RGATCY 3 cut(s) 266, 306, 315
BsuRI GGCC 2 cut(s) 109, 215
BtgI CCRYGG 2 cut(s) 21, 276
BtsCI GGATG 2 cut(s) 306, 472
BtsIMutI CAGTG 1 cut(s) 466
Cac8I GCNNGC 2 cut(s) 338, 344
CfoI GCGC 3 cut(s) 92, 342, 398
CseI GACGC 4 cut(s) 17, 195, 254, 387
CviAII CATG 1 cut(s) 343
CviJI RGCY 8 cut(s) 29, 46, 79, 84, 102, 109, 215, 362
CviKI_1 RGCY 8 cut(s) 29, 46, 79, 84, 102, 109, 215, 362
DdeI CTNAG 4 cut(s) 363, 477, 492, 498
DinI GGCGCC 1 cut(s) 91
DpnI GATC 5 cut(s) 72, 268, 308, 317, 332
DpnII GATC 5 cut(s) 70, 266, 306, 315, 330
EaeI YGGCCR 1 cut(s) 107
EciI GGCGGA 2 cut(s) 193, 259
Eco130I CCWWGG 1 cut(s) 324
Eco31I GGTCTC 3 cut(s) 149, 287, 398
Eco88I CYCGRG 1 cut(s) 347
EcoT14I CCWWGG 1 cut(s) 324
EgeI GGCGCC 1 cut(s) 91
EheI GGCGCC 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 324
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 1 cut(s) 346
FaiI YATR 1 cut(s) 344
FaqI GGGAC 1 cut(s) 211
FatI CATG 1 cut(s) 342
FauI CCCGC 2 cut(s) 134, 236
FblI GTMKAC 1 cut(s) 141
FokI GGATG 2 cut(s) 313, 479
GlaI GCGC 3 cut(s) 91, 341, 397
GsaI CCCAGC 1 cut(s) 84
GsuI CTGGAG 1 cut(s) 166
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 2 cut(s) 109, 215
HapII CCGG 3 cut(s) 87, 261, 297
HgaI GACGC 4 cut(s) 17, 195, 254, 387
HhaI GCGC 3 cut(s) 92, 342, 398
Hin1I GRCGYC 3 cut(s) 9, 90, 246
Hin1II CATG 1 cut(s) 346
Hin6I GCGC 3 cut(s) 90, 340, 396
HinP1I GCGC 3 cut(s) 90, 340, 396
HincII GTYRAC 2 cut(s) 142, 504
HindII GTYRAC 2 cut(s) 142, 504
HinfI GANTC 5 cut(s) 35, 62, 224, 234, 500
HpaII CCGG 3 cut(s) 87, 261, 297
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 2 cut(s) 142, 504
Hpy188I TCNGA 3 cut(s) 7, 75, 403
Hpy188III TCNNGA 3 cut(s) 154, 183, 472
Hpy8I GTNNAC 2 cut(s) 142, 504
Hpy99I CGWCG 5 cut(s) 35, 140, 143, 212, 440
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 2 cut(s) 22, 146
HpyCH4V TGCA 1 cut(s) 313
HpyF10VI GCNNNNNNNGC 8 cut(s) 52, 212, 254, 368, 380, 383, 440, 449
HpyF3I CTNAG 4 cut(s) 363, 477, 492, 498
Hsp92I GRCGYC 3 cut(s) 9, 90, 246
Hsp92II CATG 1 cut(s) 346
HspAI GCGC 3 cut(s) 90, 340, 396
KasI GGCGCC 1 cut(s) 89
Kzo9I GATC 5 cut(s) 70, 266, 306, 315, 330
LmnI GCTCC 1 cut(s) 89
Lsp1109I GCAGC 3 cut(s) 67, 361, 370
LweI GCATC 1 cut(s) 430
MalI GATC 5 cut(s) 72, 268, 308, 317, 332
MboI GATC 5 cut(s) 70, 266, 306, 315, 330
MboII GAAGA 2 cut(s) 316, 499
MflI RGATCY 3 cut(s) 266, 306, 315
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 1 cut(s) 482
Mly113I GGCGCC 1 cut(s) 90
MlyI GAGTC 2 cut(s) 233, 509
MnlI CCTC 9 cut(s) 170, 181, 186, 205, 214, 274, 343, 457, 472
MspA1I CMGCKG 2 cut(s) 288, 374
MspI CCGG 3 cut(s) 87, 261, 297
MspR9I CCNGG 2 cut(s) 262, 298
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 8 cut(s) 52, 212, 254, 368, 380, 383, 440, 449
NarI GGCGCC 1 cut(s) 90
NciI CCSGG 2 cut(s) 262, 298
NdeII GATC 5 cut(s) 70, 266, 306, 315, 330
NlaIII CATG 1 cut(s) 346
NlaIV GGNNCC 3 cut(s) 91, 196, 268
NmeAIII GCCGAG 2 cut(s) 37, 436
NspI RCATGY 1 cut(s) 346
PaeI GCATGC 1 cut(s) 346
PaeR7I CTCGAG 1 cut(s) 347
PcsI WCGNNNNNNNCGW 3 cut(s) 138, 216, 399
PfeI GAWTC 3 cut(s) 35, 62, 234
PflFI GACNNNGTC 1 cut(s) 499
PleI GAGTC 2 cut(s) 232, 508
PluTI GGCGCC 1 cut(s) 93
PpsI GAGTC 2 cut(s) 232, 508
PspFI CCCAGC 1 cut(s) 80
PspN4I GGNNCC 3 cut(s) 91, 196, 268
PspXI VCTCGAGB 1 cut(s) 347
PstI CTGCAG 1 cut(s) 315
PsuI RGATCY 3 cut(s) 266, 306, 315
PsyI GACNNNGTC 1 cut(s) 499
SalI GTCGAC 1 cut(s) 140
Sau3AI GATC 5 cut(s) 70, 266, 306, 315, 330
SchI GAGTC 2 cut(s) 233, 509
ScrFI CCNGG 2 cut(s) 262, 298
SduI GDGCHC 1 cut(s) 20
SetI ASST 5 cut(s) 86, 200, 285, 354, 509
SfaNI GCATC 1 cut(s) 430
SfcI CTRYAG 2 cut(s) 97, 311
SfoI GGCGCC 1 cut(s) 91
Sfr274I CTCGAG 1 cut(s) 347
SlaI CTCGAG 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SphI GCATGC 1 cut(s) 346
Sse9I AATT 1 cut(s) 482
SspDI GGCGCC 1 cut(s) 89
StyD4I CCNGG 2 cut(s) 260, 296
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 2 cut(s) 22, 146
TaqI TCGA 5 cut(s) 33, 141, 153, 237, 348
TaqII GACCGA 1 cut(s) 131
TasI AATT 1 cut(s) 482
TfiI GAWTC 3 cut(s) 35, 62, 234
TscAI CASTG 1 cut(s) 466
TseI GCWGC 3 cut(s) 55, 374, 383
TspDTI ATGAA 1 cut(s) 317
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 1 cut(s) 466
Tth111I GACNNNGTC 1 cut(s) 499
XceI RCATGY 1 cut(s) 346
XhoI CTCGAG 1 cut(s) 347
XmiI GTMKAC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.