MD11G1254000.v1.1
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000212
Physical Location & Seq
Reverse (-)
36636249 .. 36638047
1799 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1254000.v1.1.491

Sequence Viewer

Length: 1479 bp
ATGGAAGAAATCATATCCTCATTCTGTCCACCCGATTTCTGCCAGGAAACCACATTTCAACAGCGCCTACAGTTCTTAGTTCAGAACGTGCCTGAGTGGTGGGTGTATTCCATTTTCTGGCGAGCCTCCAAAGACAGCAGTAGTGACCAAGTTTCCCTGTCATGGGCTGGCGGACATTTTCAGAACACCCGCGACCACTTGGCATCGAAAAGAAGCAATCAAGTGAACCGGGAAGTTGAAGCTCTTTTGCATGATGACGTGATGTATTTGGACATGAGGCTGGTGGATCATGGAGATGTCACTGACTCCGAGTTGTTTTACTTTTACACCGTTTCCTTAACCCAGTCATTCTCTGCAAGCCACGGTAATAATAGTAACAATATTTTCGGCAGGGCATTTGGTTCTGGTGGGTTTGTTTGGCTTGCAGGTGACCATGAATTTCAGTTTTATGAGTGTGAGAGAGTGAAAGAAGCCAGAATGCATGGAATCCAAACTTTGGTTTGCATTGCAACTCCTTGTGGGGTGGTTGAACTGGCCTCTTTGGATGTGATCAAAGAAGATTACGGTCTAGTGCATTTATCAAAGTCGCTGTTCGGATCAGACGGCAACCACAACAACAACAACAGGAGGCTCTCAAAGCATCAGACCAGTCTTGAAGGCAATATACTTGATCCTATCCTAGAAAATGAACTGTTTTCAGCAGATCAAAATGAACTGACCCGACAAGGTGGAATAAACGAAGCTGCTGCACCTATCAATGTAGGAGGATCATCACTAGAATCACCTTCTAACTCCGTTGGTAATTTCACCTCCGAGAATACTAAGAACAAGACTCGATCAAAAAACAGAGGAAGGTCATCAAACAATGGAGCTGCAAGTAGACAATCACAATTGTCAAACCACGTTGAAGCCGAGAAACAGAGGAGGGAGAAACTCAACCACAGATTCTTTGTCCTCCGGTCAGTTGTTCCCAATGTGTCCAAAATGGACAGGTCCTCTTTGCTTGCCGATGCCGTGGCGTACATCAATCAACTCAAATCAAAAGTTGAGGAGTTGGACGCCAAAGTCCAAGAACAAGCACAAAAACCTAAAGCGGGCAATAATGCAAGTAACAATCTTGATCATCAGTCCAGCCAAAGCACCAGCGCTATAGTTGGCCAGCATCATTATTCTAATATTAATTTTAATGATAATACTATTAGTAATAGTAATAGGGCAGCTGCTGCTGCCGTTGTGGAAGTGGATGTGTATGTGAAGATTATGGGGTCAGAAGCCAAGATACGTGTTCAGAGTCCGGATCAAGACTACCCATATGCTAAGTTGATGAGTGCACTCAAAGGCCTAGGGTTACAAGTGTACCATGCAAGCATATCGAGCGTGAAAGAGTTGATGATTCAAGATGTTGTGGCAAGACTGCCTTATGGGTTCACTAGTGAGGAGGTATTGAGAAACGGTATTATTAAAAGATGGTCACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

493

Amino Acids

54.92

Weight (kDa)

6.2

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 20 - 198 1.5e-39 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 299 - 346 1.4e-10 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 416
AasI GACNNNNNNGTC 1 cut(s) 1064
Acc36I ACCTGC 1 cut(s) 416
AccB7I CCANNNNNTGG 2 cut(s) 117, 496
AccI GTMKAC 1 cut(s) 880
AccII CGCG 1 cut(s) 192
AccIII TCCGGA 1 cut(s) 1294
AciI CCGC 3 cut(s) 171, 190, 1094
AclWI GGATC 5 cut(s) 294, 604, 665, 775, 1305
AcoI YGGCCR 1 cut(s) 1156
AcsI RAATTY 1 cut(s) 437
AcyI GRCGYC 1 cut(s) 1059
AfaI GTAC 2 cut(s) 1022, 1358
AfeI AGCGCT 1 cut(s) 1147
AfiI CCNNNNNNNGG 5 cut(s) 117, 162, 163, 496, 1094
AflIII ACRYGT 1 cut(s) 1282
AgsI TTSAA 6 cut(s) 59, 239, 530, 656, 908, 1397
AhlI ACTAGT 1 cut(s) 1430
AjiI CACGTC 1 cut(s) 259
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 4 cut(s) 242, 743, 872, 1220
AluI AGCT 4 cut(s) 242, 743, 872, 1220
Alw21I GWGCWC 1 cut(s) 1333
Alw44I GTGCAC 1 cut(s) 1329
AlwI GGATC 5 cut(s) 294, 604, 665, 775, 1305
AlwNI CAGNNNCTG 1 cut(s) 1223
Aor13HI TCCGGA 1 cut(s) 1294
Aor51HI AGCGCT 1 cut(s) 1147
AoxI GGCC 3 cut(s) 534, 1156, 1339
ApaLI GTGCAC 1 cut(s) 1329
ApeKI GCWGC 7 cut(s) 743, 746, 872, 1217, 1220, 1223, 1226
ApoI RAATTY 1 cut(s) 437
AseI ATTAAT 1 cut(s) 1179
AspA2I CCTAGG 1 cut(s) 1342
AspLEI GCGC 2 cut(s) 66, 1148
AspS9I GGNCC 1 cut(s) 993
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 3 cut(s) 440, 774, 799
AvaII GGWCC 1 cut(s) 993
AvrII CCTAGG 1 cut(s) 1342
BaeGI GKGCMC 1 cut(s) 1333
BaeI ACNNNNGTAYC 2 cut(s) 1340, 1373
BalI TGGCCA 1 cut(s) 1158
BarI GAAGNNNNNNTAC 4 cut(s) 648, 680, 1263, 1295
Bbv12I GWGCWC 1 cut(s) 1333
BbvI GCAGC 7 cut(s) 730, 733, 859, 1207, 1210, 1213, 1229
BccI CCATC 1 cut(s) 1461
BceAI ACGGC 3 cut(s) 619, 998, 1214
BcgI CGANNNNNNTGC 4 cut(s) 728, 762, 1353, 1387
BciT130I CCWGG 1 cut(s) 44
BclI TGATCA 2 cut(s) 549, 1120
BcnI CCSGG 1 cut(s) 230
BcuI ACTAGT 1 cut(s) 1430
BfaI CTAG 5 cut(s) 569, 680, 776, 1343, 1431
BfmI CTRYAG 2 cut(s) 68, 1149
BfoI RGCGCY 2 cut(s) 67, 1149
BfuAI ACCTGC 1 cut(s) 416
BisI GCNGC 7 cut(s) 744, 747, 873, 1218, 1221, 1224, 1227
BlnI CCTAGG 1 cut(s) 1342
BlsI GCNGC 7 cut(s) 745, 748, 874, 1219, 1222, 1225, 1228
Bme1390I CCNGG 2 cut(s) 44, 230
Bme18I GGWCC 1 cut(s) 993
BmgBI CACGTC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 993
BmrFI CCNGG 2 cut(s) 44, 230
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 4 cut(s) 212, 649, 1000, 1171
BmuI ACTGGG 1 cut(s) 337
BpuMI CCSGG 1 cut(s) 230
BsaAI YACGTR 1 cut(s) 1283
BsaHI GRCGYC 1 cut(s) 1059
BsaJI CCNNGG 3 cut(s) 361, 1014, 1342
BsaWI WCCGGW 2 cut(s) 957, 1294
Bsc4I CCNNNNNNNGG 5 cut(s) 117, 162, 163, 496, 1094
Bse1I ACTGG 3 cut(s) 343, 537, 648
Bse3DI GCAATG 1 cut(s) 504
BseAI TCCGGA 1 cut(s) 1294
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 3 cut(s) 361, 1014, 1342
BseGI GGATG 2 cut(s) 550, 1249
BseLI CCNNNNNNNGG 5 cut(s) 117, 162, 163, 496, 1094
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 3 cut(s) 343, 537, 648
BseRI GAGGAG 3 cut(s) 937, 1064, 1451
BseSI GKGCMC 1 cut(s) 1333
BseXI GCAGC 7 cut(s) 730, 733, 859, 1207, 1210, 1213, 1229
BsgI GTGCAG 1 cut(s) 732
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 3 cut(s) 536, 1158, 1341
BsiHKAI GWGCWC 1 cut(s) 1333
BsiSI CCGG 3 cut(s) 229, 958, 1295
BslI CCNNNNNNNGG 5 cut(s) 117, 162, 163, 496, 1094
BsmI GAATGC 1 cut(s) 483
BsnI GGCC 3 cut(s) 536, 1158, 1341
Bsp1286I GDGCHC 1 cut(s) 1333
Bsp13I TCCGGA 1 cut(s) 1294
Bsp143I GATC 9 cut(s) 286, 549, 596, 670, 703, 767, 836, 1120, 1297
BspACI CCGC 3 cut(s) 171, 190, 1094
BspANI GGCC 3 cut(s) 536, 1158, 1341
BspCNI CTCAG 1 cut(s) 85
BspEI TCCGGA 1 cut(s) 1294
BspFNI CGCG 1 cut(s) 192
BspMI ACCTGC 1 cut(s) 416
BspPI GGATC 5 cut(s) 294, 604, 665, 775, 1305
BsrDI GCAATG 1 cut(s) 504
BsrI ACTGG 3 cut(s) 343, 537, 648
BssECI CCNNGG 3 cut(s) 361, 1014, 1342
BssMI GATC 9 cut(s) 286, 549, 596, 670, 703, 767, 836, 1120, 1297
BssNI GRCGYC 1 cut(s) 1059
BssT1I CCWWGG 1 cut(s) 1342
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 6 cut(s) 72, 331, 365, 566, 693, 1454
BstACI GRCGYC 1 cut(s) 1059
BstAPI GCANNNNNTGC 1 cut(s) 1223
BstBAI YACGTR 1 cut(s) 1283
BstC8I GCNNGC 8 cut(s) 123, 169, 358, 423, 1005, 1096, 1160, 1366
BstDEI CTNAG 4 cut(s) 76, 93, 822, 1317
BstDSI CCRYGG 2 cut(s) 361, 1014
BstEII GGTNACC 1 cut(s) 428
BstF5I GGATG 2 cut(s) 550, 1249
BstFNI CGCG 1 cut(s) 192
BstH2I RGCGCY 2 cut(s) 67, 1149
BstHHI GCGC 2 cut(s) 66, 1148
BstKTI GATC 9 cut(s) 289, 552, 599, 673, 706, 770, 839, 1123, 1300
BstMBI GATC 9 cut(s) 286, 549, 596, 670, 703, 767, 836, 1120, 1297
BstMWI GCNNNNNNNGC 4 cut(s) 637, 1223, 1226, 1374
BstNI CCWGG 1 cut(s) 44
BstPI GGTNACC 1 cut(s) 428
BstSCI CCNGG 2 cut(s) 42, 228
BstSFI CTRYAG 2 cut(s) 68, 1149
BstSLI GKGCMC 1 cut(s) 1333
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 7 cut(s) 730, 733, 859, 1207, 1210, 1213, 1229
BsuRI GGCC 3 cut(s) 536, 1158, 1341
BtgI CCRYGG 2 cut(s) 361, 1014
BtrI CACGTC 1 cut(s) 259
BtsCI GGATG 2 cut(s) 550, 1249
BtsIMutI CAGTG 1 cut(s) 300
BveI ACCTGC 1 cut(s) 416
Cac8I GCNNGC 8 cut(s) 123, 169, 358, 423, 1005, 1096, 1160, 1366
CaiI CAGNNNCTG 1 cut(s) 1223
CfoI GCGC 2 cut(s) 66, 1148
Cfr13I GGNCC 1 cut(s) 993
CseI GACGC 1 cut(s) 1067
Csp6I GTAC 2 cut(s) 1021, 1357
CviAII CATG 7 cut(s) 162, 251, 274, 290, 434, 482, 1361
CviQI GTAC 2 cut(s) 1021, 1357
DdeI CTNAG 4 cut(s) 76, 93, 822, 1317
DpnI GATC 9 cut(s) 288, 551, 598, 672, 705, 769, 838, 1122, 1299
DpnII GATC 9 cut(s) 286, 549, 596, 670, 703, 767, 836, 1120, 1297
DrdI GACNNNNNNGTC 1 cut(s) 1064
DseDI GACNNNNNNGTC 1 cut(s) 1064
EaeI YGGCCR 1 cut(s) 1156
EciI GGCGGA 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 1342
Eco147I AGGCCT 1 cut(s) 1341
Eco47I GGWCC 1 cut(s) 993
Eco47III AGCGCT 1 cut(s) 1147
Eco91I GGTNACC 1 cut(s) 428
EcoO109I RGGNCCY 1 cut(s) 993
EcoO65I GGTNACC 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 1342
EcoT22I ATGCAT 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 1342
FaeI CATG 7 cut(s) 165, 254, 277, 293, 437, 485, 1364
FalI AAGNNNNNCTT 2 cut(s) 1402, 1434
FatI CATG 7 cut(s) 161, 250, 273, 289, 433, 481, 1360
FauI CCCGC 2 cut(s) 197, 1087
FauNDI CATATG 1 cut(s) 1312
FbaI TGATCA 2 cut(s) 549, 1120
FblI GTMKAC 1 cut(s) 880
Fnu4HI GCNGC 7 cut(s) 744, 747, 873, 1218, 1221, 1224, 1227
FokI GGATG 2 cut(s) 557, 1256
Fsp4HI GCNGC 7 cut(s) 744, 747, 873, 1218, 1221, 1224, 1227
FspBI CTAG 5 cut(s) 569, 680, 776, 1343, 1431
GlaI GCGC 2 cut(s) 65, 1147
GluI GCNGC 7 cut(s) 744, 747, 873, 1218, 1221, 1224, 1227
HaeII RGCGCY 2 cut(s) 67, 1149
HaeIII GGCC 3 cut(s) 536, 1158, 1341
HapII CCGG 3 cut(s) 229, 958, 1295
HgaI GACGC 1 cut(s) 1067
HhaI GCGC 2 cut(s) 66, 1148
Hin1I GRCGYC 1 cut(s) 1059
Hin1II CATG 7 cut(s) 165, 254, 277, 293, 437, 485, 1364
Hin6I GCGC 2 cut(s) 64, 1146
HinP1I GCGC 2 cut(s) 64, 1146
HinfI GANTC 7 cut(s) 305, 486, 779, 832, 945, 1291, 1393
HpaII CCGG 3 cut(s) 229, 958, 1295
HphI GGTGA 3 cut(s) 440, 774, 799
Hpy166II GTNNAC 6 cut(s) 29, 226, 881, 1331, 1357, 1428
Hpy188I TCNGA 9 cut(s) 84, 183, 310, 596, 601, 645, 814, 1270, 1290
Hpy188III TCNNGA 5 cut(s) 653, 1118, 1295, 1301, 1397
Hpy8I GTNNAC 6 cut(s) 29, 226, 881, 1331, 1357, 1428
HpyAV CCTTC 3 cut(s) 650, 795, 846
HpyCH4III ACNGT 6 cut(s) 72, 331, 365, 566, 693, 1454
HpyCH4IV ACGT 4 cut(s) 87, 258, 903, 1282
HpyF10VI GCNNNNNNNGC 4 cut(s) 637, 1223, 1226, 1374
HpyF3I CTNAG 4 cut(s) 76, 93, 822, 1317
HpySE526I ACGT 4 cut(s) 87, 258, 903, 1282
Hsp92I GRCGYC 1 cut(s) 1059
Hsp92II CATG 7 cut(s) 165, 254, 277, 293, 437, 485, 1364
HspAI GCGC 2 cut(s) 64, 1146
Kpn2I TCCGGA 1 cut(s) 1294
Ksp22I TGATCA 2 cut(s) 549, 1120
Kzo9I GATC 9 cut(s) 286, 549, 596, 670, 703, 767, 836, 1120, 1297
LmnI GCTCC 1 cut(s) 869
Lsp1109I GCAGC 7 cut(s) 730, 733, 859, 1207, 1210, 1213, 1229
LweI GCATC 4 cut(s) 212, 649, 1000, 1171
MaeI CTAG 5 cut(s) 569, 680, 776, 1343, 1431
MaeII ACGT 4 cut(s) 87, 258, 903, 1282
MaeIII GTNAC 7 cut(s) 143, 298, 374, 428, 1109, 1347, 1470
MalI GATC 9 cut(s) 288, 551, 598, 672, 705, 769, 838, 1122, 1299
MboI GATC 9 cut(s) 286, 549, 596, 670, 703, 767, 836, 1120, 1297
MboII GAAGA 3 cut(s) 17, 569, 1267
MfeI CAATTG 1 cut(s) 890
MhlI GDGCHC 1 cut(s) 1333
MlsI TGGCCA 1 cut(s) 1158
MluCI AATT 4 cut(s) 437, 802, 890, 1180
MluNI TGGCCA 1 cut(s) 1158
MlyI GAGTC 3 cut(s) 299, 826, 1300
MmeI TCCRAC 1 cut(s) 1035
Mox20I TGGCCA 1 cut(s) 1158
Mph1103I ATGCAT 1 cut(s) 483
MroI TCCGGA 1 cut(s) 1294
MscI TGGCCA 1 cut(s) 1158
MseI TTAA 4 cut(s) 338, 1179, 1185, 1461
MslI CAYNNNNRTG 1 cut(s) 294
Msp20I TGGCCA 1 cut(s) 1158
MspA1I CMGCKG 1 cut(s) 1220
MspI CCGG 3 cut(s) 229, 958, 1295
MspR9I CCNGG 2 cut(s) 44, 230
MunI CAATTG 1 cut(s) 890
Mva1269I GAATGC 1 cut(s) 483
MvaI CCWGG 1 cut(s) 44
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 4 cut(s) 637, 1223, 1226, 1374
NciI CCSGG 1 cut(s) 230
NdeI CATATG 1 cut(s) 1312
NdeII GATC 9 cut(s) 286, 549, 596, 670, 703, 767, 836, 1120, 1297
NlaIII CATG 7 cut(s) 165, 254, 277, 293, 437, 485, 1364
NmeAIII GCCGAG 1 cut(s) 937
NmuCI GTSAC 4 cut(s) 143, 298, 428, 1470
NsiI ATGCAT 1 cut(s) 483
PaqCI CACCTGC 1 cut(s) 416
PceI AGGCCT 1 cut(s) 1341
PcsI WCGNNNNNNNCGW 1 cut(s) 909
PctI GAATGC 1 cut(s) 483
PfeI GAWTC 4 cut(s) 486, 779, 945, 1393
PflMI CCANNNNNTGG 2 cut(s) 117, 496
PkrI GCNGC 7 cut(s) 745, 748, 874, 1219, 1222, 1225, 1228
PleI GAGTC 3 cut(s) 299, 826, 1299
PpsI GAGTC 3 cut(s) 299, 826, 1299
Ppu21I YACGTR 1 cut(s) 1283
PpuMI RGGWCCY 1 cut(s) 993
PshBI ATTAAT 1 cut(s) 1179
Psp5II RGGWCCY 1 cut(s) 993
Psp6I CCWGG 1 cut(s) 42
PspEI GGTNACC 1 cut(s) 428
PspGI CCWGG 1 cut(s) 42
PspPI GGNCC 1 cut(s) 993
PspPPI RGGWCCY 1 cut(s) 993
PstNI CAGNNNCTG 1 cut(s) 1223
PvuII CAGCTG 1 cut(s) 1220
RsaI GTAC 2 cut(s) 1022, 1358
RsaNI GTAC 2 cut(s) 1021, 1357
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 4 cut(s) 338, 1179, 1185, 1461
SatI GCNGC 7 cut(s) 744, 747, 873, 1218, 1221, 1224, 1227
Sau3AI GATC 9 cut(s) 286, 549, 596, 670, 703, 767, 836, 1120, 1297
Sau96I GGNCC 1 cut(s) 993
SchI GAGTC 3 cut(s) 299, 826, 1300
ScrFI CCNGG 2 cut(s) 44, 230
SduI GDGCHC 1 cut(s) 1333
SfaNI GCATC 4 cut(s) 212, 649, 1000, 1171
SfcI CTRYAG 2 cut(s) 68, 1149
SinI GGWCC 1 cut(s) 993
SmiMI CAYNNNNRTG 1 cut(s) 294
SpeI ACTAGT 1 cut(s) 1430
Sse9I AATT 4 cut(s) 437, 802, 890, 1180
SseBI AGGCCT 1 cut(s) 1341
SsiI CCGC 3 cut(s) 171, 190, 1094
SspI AATATT 2 cut(s) 382, 1177
SspMI CTAG 5 cut(s) 569, 680, 776, 1343, 1431
StuI AGGCCT 1 cut(s) 1341
StyD4I CCNGG 2 cut(s) 42, 228
StyI CCWWGG 1 cut(s) 1342
TaaI ACNGT 6 cut(s) 72, 331, 365, 566, 693, 1454
TaiI ACGT 4 cut(s) 90, 261, 906, 1285
TaqI TCGA 3 cut(s) 206, 835, 1373
TasI AATT 4 cut(s) 437, 802, 890, 1180
TfiI GAWTC 4 cut(s) 486, 779, 945, 1393
Tru1I TTAA 4 cut(s) 338, 1179, 1185, 1461
Tru9I TTAA 4 cut(s) 338, 1179, 1185, 1461
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 4 cut(s) 143, 298, 428, 1470
TseI GCWGC 7 cut(s) 743, 746, 872, 1217, 1220, 1223, 1226
Tsp45I GTSAC 4 cut(s) 143, 298, 428, 1470
TspDTI ATGAA 3 cut(s) 450, 702, 726
TspGWI ACGGA 1 cut(s) 784
TspRI CASTG 1 cut(s) 307
Van91I CCANNNNNTGG 2 cut(s) 117, 496
VneI GTGCAC 1 cut(s) 1329
VpaK11BI GGWCC 1 cut(s) 993
VspI ATTAAT 1 cut(s) 1179
XapI RAATTY 1 cut(s) 437
XmaJI CCTAGG 1 cut(s) 1342
XmiI GTMKAC 1 cut(s) 880
XspI CTAG 5 cut(s) 569, 680, 776, 1343, 1431
Zsp2I ATGCAT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.