Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000378.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Forward (+)

54690 .. 57067

Gene Structure 2378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000378.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atgatctgcatcccaacttccgacggtgttcttgaaatgggttcctctggtttgatcagagagaactgggggttgatcaagcaagccaagtcgttgttcaggtcggatcagccagacccggaaacaagaccgctcgagttcatcaactggaacttctccatttttgacatcggcatcattgccggtgtgcaggaagaggatcacagctcgtacaatgacgacaagaaacatgtttttggttctagcaagaagaagaacggagctccgaacccaaactcggacttcgcagattccgactgccagatgaaaagagcgccgaagaaacggggcctgaaacccgtgttgggccgagacacgccgctcgaccacgtggaggcggagcggcaacggtgggagaagctcacctcacaagggcggcgttggaagcgagggagtgagcgtggaggtgaggaaggtggcgttggaagcgagggacaagaagaagaacagagctccgaacccaaacccagacttcgcagattccgactgccagatgaaaagagcgccgaagaaacagggcaggaaacccgggctgggctgagacacgcctctcaaccacttggaggcggagtggcagcggcgggaaaagctcacctcgcaagggtttccggtgggtctccggccgacctccggccaacttccggcgggtctccggcgaccacaaaagctattatcactaacaccaaaagctactctgatgagatttccgacaatctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

252

Amino Acids

27.52

Weight (kDa)

6.99

Isoelectric Point (pI)

54.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	133, 361, 382
AciI	CCGC	9 cut(s)	131, 359, 377, 382, 415, 606, 617, 620, 684
AclWI	GGATC	2 cut(s)	114, 207
AcoI	YGGCCR	2 cut(s)	660, 671
AcvI	CACGTG	1 cut(s)	370
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	9 cut(s)	277, 344, 373, 411, 573, 602, 640, 669, 680
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	35
AjuI	GAANNNNNNNTTGG	6 cut(s)	80, 112, 326, 358, 444, 476
AluBI	AGCT	7 cut(s)	207, 263, 400, 492, 629, 707, 729
AluI	AGCT	7 cut(s)	207, 263, 400, 492, 629, 707, 729
Alw21I	GWGCWC	2 cut(s)	265, 494
Alw26I	GTCTC	4 cut(s)	345, 574, 660, 693
AlwI	GGATC	2 cut(s)	114, 207
Ama87I	CYCGRG	2 cut(s)	134, 567
AoxI	GGCC	4 cut(s)	328, 346, 660, 671
ApeKI	GCWGC	1 cut(s)	614
AspLEI	GCGC	2 cut(s)	316, 545
AspS9I	GGNCC	2 cut(s)	328, 346
AsuC2I	CCSGG	3 cut(s)	119, 568, 569
AsuHPI	GGTGA	3 cut(s)	394, 458, 623
AvaI	CYCGRG	2 cut(s)	134, 567
BanII	GRGCYC	2 cut(s)	265, 494
BbrPI	CACGTG	1 cut(s)	370
Bbv12I	GWGCWC	2 cut(s)	265, 494
BbvI	GCAGC	1 cut(s)	626
BclI	TGATCA	2 cut(s)	54, 75
BcnI	CCSGG	3 cut(s)	119, 568, 569
BcoDI	GTCTC	4 cut(s)	345, 574, 660, 693
BfaI	CTAG	1 cut(s)	243
BfoI	RGCGCY	2 cut(s)	317, 546
BisI	GCNGC	5 cut(s)	359, 383, 416, 615, 618
BlsI	GCNGC	5 cut(s)	360, 384, 417, 616, 619
Bme1390I	CCNGG	3 cut(s)	119, 568, 569
BmeT110I	CYCGRG	2 cut(s)	134, 567
BmgT120I	GGNCC	2 cut(s)	328, 346
BmiI	GGNNCC	2 cut(s)	43, 329
BmrFI	CCNGG	3 cut(s)	119, 568, 569
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	2 cut(s)	18, 183
BmuI	ACTGGG	1 cut(s)	76
BpuMI	CCSGG	3 cut(s)	119, 568, 569
BsaAI	YACGTR	1 cut(s)	370
BsaBI	GATNNNNATC	1 cut(s)	8
BsaI	GGTCTC	2 cut(s)	660, 693
BsaJI	CCNNGG	1 cut(s)	567
BsaWI	WCCGGW	1 cut(s)	647
BsaXI	ACNNNNNCTCC	4 cut(s)	424, 454, 594, 624
Bsc4I	CCNNNNNNNGG	9 cut(s)	277, 344, 373, 411, 573, 602, 640, 669, 680
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	2 cut(s)	71, 152
Bse3DI	GCAATG	1 cut(s)	177
Bse8I	GATNNNNATC	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	1 cut(s)	9
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	9 cut(s)	277, 344, 373, 411, 573, 602, 640, 669, 680
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	569
BseNI	ACTGG	2 cut(s)	71, 152
BseX3I	CGGCCG	1 cut(s)	660
BseXI	GCAGC	1 cut(s)	626
BseYI	CCCAGC	1 cut(s)	572
BsgI	GTGCAG	1 cut(s)	209
Bsh1285I	CGRYCG	1 cut(s)	663
BshFI	GGCC	4 cut(s)	330, 348, 662, 673
BsiEI	CGRYCG	1 cut(s)	663
BsiHKAI	GWGCWC	2 cut(s)	265, 494
BsiHKCI	CYCGRG	2 cut(s)	134, 567
BsiSI	CCGG	8 cut(s)	119, 183, 568, 648, 659, 670, 681, 692
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	9 cut(s)	277, 344, 373, 411, 573, 602, 640, 669, 680
BsmAI	GTCTC	4 cut(s)	345, 574, 660, 693
BsmFI	GGGAC	1 cut(s)	486
BsnI	GGCC	4 cut(s)	330, 348, 662, 673
Bso31I	GGTCTC	2 cut(s)	660, 693
BsoBI	CYCGRG	2 cut(s)	134, 567
Bsp1286I	GDGCHC	2 cut(s)	265, 494
Bsp143I	GATC	5 cut(s)	3, 54, 75, 106, 199
BspACI	CCGC	9 cut(s)	131, 359, 377, 382, 415, 606, 617, 620, 684
BspANI	GGCC	4 cut(s)	330, 348, 662, 673
BspCNI	CTCAG	1 cut(s)	570
BspLI	GGNNCC	2 cut(s)	43, 329
BspPI	GGATC	2 cut(s)	114, 207
BspTNI	GGTCTC	2 cut(s)	660, 693
BsrBI	CCGCTC	3 cut(s)	133, 361, 382
BsrDI	GCAATG	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	2 cut(s)	71, 152
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	5 cut(s)	3, 54, 75, 106, 199
Bst4CI	ACNGT	2 cut(s)	26, 390
Bst6I	CTCTTC	1 cut(s)	189
BstBAI	YACGTR	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	578
BstF5I	GGATG	1 cut(s)	9
BstH2I	RGCGCY	2 cut(s)	317, 546
BstHHI	GCGC	2 cut(s)	316, 545
BstKTI	GATC	5 cut(s)	6, 57, 78, 109, 202
BstMAI	GTCTC	4 cut(s)	345, 574, 660, 693
BstMBI	GATC	5 cut(s)	3, 54, 75, 106, 199
BstMCI	CGRYCG	1 cut(s)	663
BstMWI	GCNNNNNNNGC	4 cut(s)	424, 465, 626, 635
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	3 cut(s)	117, 566, 567
BstV1I	GCAGC	1 cut(s)	626
BstZI	CGGCCG	1 cut(s)	660
BsuRI	GGCC	4 cut(s)	330, 348, 662, 673
BtsCI	GGATG	1 cut(s)	9
Cac8I	GCNNGC	1 cut(s)	84
CfoI	GCGC	2 cut(s)	316, 545
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	2 cut(s)	328, 346
Cfr9I	CCCGGG	1 cut(s)	567
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	1 cut(s)	230
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	1 cut(s)	578
DpnI	GATC	5 cut(s)	5, 56, 77, 108, 201
DpnII	GATC	5 cut(s)	3, 54, 75, 106, 199
EaeI	YGGCCR	2 cut(s)	660, 671
EagI	CGGCCG	1 cut(s)	660
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
EciI	GGCGGA	2 cut(s)	392, 621
Ecl136II	GAGCTC	2 cut(s)	263, 492
EclXI	CGGCCG	1 cut(s)	660
Eco24I	GRGCYC	2 cut(s)	265, 494
Eco31I	GGTCTC	2 cut(s)	660, 693
Eco52I	CGGCCG	1 cut(s)	660
Eco53kI	GAGCTC	2 cut(s)	263, 492
Eco72I	CACGTG	1 cut(s)	370
Eco88I	CYCGRG	2 cut(s)	134, 567
EcoICRI	GAGCTC	2 cut(s)	263, 492
EcoO109I	RGGNCCY	1 cut(s)	328
EcoT38I	GRGCYC	2 cut(s)	265, 494
FaeI	CATG	1 cut(s)	233
FaiI	YATR	1 cut(s)	231
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	1 cut(s)	229
FauI	CCCGC	2 cut(s)	613, 677
FbaI	TGATCA	2 cut(s)	54, 75
Fnu4HI	GCNGC	5 cut(s)	359, 383, 416, 615, 618
FriOI	GRGCYC	2 cut(s)	265, 494
Fsp4HI	GCNGC	5 cut(s)	359, 383, 416, 615, 618
FspBI	CTAG	1 cut(s)	243
GlaI	GCGC	2 cut(s)	315, 544
GluI	GCNGC	5 cut(s)	359, 383, 416, 615, 618
GsaI	CCCAGC	1 cut(s)	576
HaeII	RGCGCY	2 cut(s)	317, 546
HaeIII	GGCC	4 cut(s)	330, 348, 662, 673
HapII	CCGG	8 cut(s)	119, 183, 568, 648, 659, 670, 681, 692
HhaI	GCGC	2 cut(s)	316, 545
Hin1II	CATG	1 cut(s)	233
Hin6I	GCGC	2 cut(s)	314, 543
HinP1I	GCGC	2 cut(s)	314, 543
HinfI	GANTC	2 cut(s)	290, 519
HpaII	CCGG	8 cut(s)	119, 183, 568, 648, 659, 670, 681, 692
HphI	GGTGA	3 cut(s)	394, 458, 623
Hpy188III	TCNNGA	1 cut(s)	32
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	1 cut(s)	446
HpyCH4III	ACNGT	2 cut(s)	26, 390
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	2 cut(s)	9, 190
HpyF10VI	GCNNNNNNNGC	4 cut(s)	424, 465, 626, 635
HpyF3I	CTNAG	1 cut(s)	578
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	1 cut(s)	233
HspAI	GCGC	2 cut(s)	314, 543
Ksp22I	TGATCA	2 cut(s)	54, 75
Kzo9I	GATC	5 cut(s)	3, 54, 75, 106, 199
LmnI	GCTCC	4 cut(s)	260, 268, 379, 497
Lsp1109I	GCAGC	1 cut(s)	626
LweI	GCATC	2 cut(s)	18, 183
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	1 cut(s)	369
MalI	GATC	5 cut(s)	5, 56, 77, 108, 201
MbiI	CCGCTC	3 cut(s)	133, 361, 382
MboI	GATC	5 cut(s)	3, 54, 75, 106, 199
MboII	GAAGA	7 cut(s)	206, 262, 265, 331, 491, 494, 560
MhlI	GDGCHC	2 cut(s)	265, 494
MmeI	TCCRAC	6 cut(s)	45, 84, 318, 401, 442, 547
MspA1I	CMGCKG	1 cut(s)	617
MspI	CCGG	8 cut(s)	119, 183, 568, 648, 659, 670, 681, 692
MspR9I	CCNGG	3 cut(s)	119, 568, 569
MwoI	GCNNNNNNNGC	4 cut(s)	424, 465, 626, 635
NciI	CCSGG	3 cut(s)	119, 568, 569
NdeII	GATC	5 cut(s)	3, 54, 75, 106, 199
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	2 cut(s)	43, 329
NmeAIII	GCCGAG	1 cut(s)	374
NspI	RCATGY	1 cut(s)	233
PaeR7I	CTCGAG	1 cut(s)	134
PciI	ACATGT	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	2 cut(s)	291, 520
PfeI	GAWTC	2 cut(s)	290, 519
PkrI	GCNGC	5 cut(s)	360, 384, 417, 616, 619
PmaCI	CACGTG	1 cut(s)	370
PmlI	CACGTG	1 cut(s)	370
Ppu21I	YACGTR	1 cut(s)	370
PscI	ACATGT	1 cut(s)	229
Psp124BI	GAGCTC	2 cut(s)	265, 494
PspCI	CACGTG	1 cut(s)	370
PspFI	CCCAGC	1 cut(s)	572
PspN4I	GGNNCC	2 cut(s)	43, 329
PspPI	GGNCC	2 cut(s)	328, 346
PspXI	VCTCGAGB	1 cut(s)	134
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SacI	GAGCTC	2 cut(s)	265, 494
SatI	GCNGC	5 cut(s)	359, 383, 416, 615, 618
Sau3AI	GATC	5 cut(s)	3, 54, 75, 106, 199
Sau96I	GGNCC	2 cut(s)	328, 346
ScrFI	CCNGG	3 cut(s)	119, 568, 569
SduI	GDGCHC	2 cut(s)	265, 494
SfaNI	GCATC	2 cut(s)	18, 183
Sfr274I	CTCGAG	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	134
SmaI	CCCGGG	1 cut(s)	569
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SsiI	CCGC	9 cut(s)	131, 359, 377, 382, 415, 606, 617, 620, 684
SspMI	CTAG	1 cut(s)	243
SstI	GAGCTC	2 cut(s)	265, 494
StyD4I	CCNGG	3 cut(s)	117, 566, 567
TaaI	ACNGT	2 cut(s)	26, 390
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	2 cut(s)	135, 363
TauI	GCSGC	4 cut(s)	361, 385, 418, 620
TfiI	GAWTC	2 cut(s)	290, 519
TseI	GCWGC	1 cut(s)	614
TspDTI	ATGAA	3 cut(s)	130, 320, 549
TspGWI	ACGGA	1 cut(s)	273
TspMI	CCCGGG	1 cut(s)	567
XceI	RCATGY	1 cut(s)	233
XhoI	CTCGAG	1 cut(s)	134
XmaI	CCCGGG	1 cut(s)	567
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.