Rh7CG281900
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000212
Physical Location & Seq
Forward (+)
28607635 .. 28611620
3986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG281900.1

Sequence Viewer

Length: 948 bp
ATGCATTTTGTTCTGGTGCTTTTGTTTGGTTGGCAGGCGACCACGAGCTTAAGTTTTATGTGTGAGAGAGTTAAAGAGGCCCACATGCATGGAATTCAAACTCTTGTTTGTATTGCAACACCCTTTGGGGTGCTTGAACTGGCTTCCTTAGAAGTGATTAAACAAGACTGGGGTTTTGTGCAGCTTTGTAAGTCTATTTTTGGATCTGACCTAATAACAACCACCGCCAATGTCTCAAACTCAAAGCAGGGTCATGTTCATGTTCCTCAGTTACAAGACGGGATATTTTCAAGATCGGTTCAGAAGGAGTGGACCACACAAGGTGATATGAGAAAAACTGTCAACCTAAGTGGATCTTCATCTGATTCCGGGCCTTATGAAAGCACATCAAACACTAGATTAAAAGAGAGAGGAAGATTTGATAAGCATGTCAATGCCAACCAAGATTCACCAATAAGCCATTCGAAGGCAGAGAGACAACGCCGGGATAAGCTTAATCATCTATTTTATGCCCTTAGGTCCGTTGTTCCTAATGTCTCAAAGATGGATAAAGCTTCGACACTATCTGATGCAATTGTATACATCAATAAATTGAAGACAACGATCGAGGAGTTGGAGGCCAAAATCCAAGCAAAACCCAAGAAACCCAAAGCAAGCATCATGATTGACAATATTCTTGATAGCCAAAGCACCAGCACTGCTGCTATGGAGGTGGATGTGGATGTGAAGATTGTAGGGTCAGAAGCCATAATTCGAGTTTGGTGTCCGAATAATCAGGATGATCCATGTGCTAGATTGATGAATGCACTCAGAGACCTTGAATTACAAATTCATCGTGCAAGCATATCTAGTGTGAATGAGTTGATACTTCAAGATGTTATAGTAAGAGTTCCTGATGGATTCGCAAGCGAGGAGGTCATCAAAACCGCAATTATTAATAGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

315

Amino Acids

35.15

Weight (kDa)

7.69

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 17 - 67 1.6e-13 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 153 - 199 6.3e-13 Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant PF22754 239 - 311 1.6e-09 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 579
AciI CCGC 2 cut(s) 225, 927
AclWI GGATC 3 cut(s) 211, 361, 776
AcsI RAATTY 2 cut(s) 93, 828
AdeI CACNNNGTG 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 466
AflII CTTAAG 1 cut(s) 49
AgsI TTSAA 6 cut(s) 98, 137, 291, 595, 821, 872
AjuI GAANNNNNNNTTGG 2 cut(s) 445, 477
AluBI AGCT 4 cut(s) 48, 184, 493, 554
AluI AGCT 4 cut(s) 48, 184, 493, 554
Alw26I GTCTC 4 cut(s) 238, 469, 541, 807
AlwI GGATC 3 cut(s) 211, 361, 776
AoxI GGCC 3 cut(s) 78, 371, 618
ApeKI GCWGC 2 cut(s) 181, 701
ApoI RAATTY 2 cut(s) 93, 828
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AseI ATTAAT 1 cut(s) 936
AspS9I GGNCC 4 cut(s) 79, 312, 371, 519
AsuC2I CCSGG 2 cut(s) 370, 485
AsuHPI GGTGA 2 cut(s) 335, 441
AsuII TTCGAA 1 cut(s) 464
AvaII GGWCC 2 cut(s) 312, 519
AxyI CCTNAGG 1 cut(s) 515
BauI CACGAG 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 602
BbvI GCAGC 2 cut(s) 193, 688
BccI CCATC 2 cut(s) 538, 890
BcnI CCSGG 2 cut(s) 370, 485
BcoDI GTCTC 4 cut(s) 238, 469, 541, 807
BfaI CTAG 3 cut(s) 396, 792, 849
BfrI CTTAAG 1 cut(s) 49
BisI GCNGC 2 cut(s) 182, 702
BlsI GCNGC 2 cut(s) 183, 703
Bme1390I CCNGG 2 cut(s) 370, 485
Bme18I GGWCC 2 cut(s) 312, 519
BmgT120I GGNCC 4 cut(s) 79, 312, 371, 519
BmrFI CCNGG 2 cut(s) 370, 485
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 2 cut(s) 559, 666
BmuI ACTGGG 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 602
Bpu14I TTCGAA 1 cut(s) 464
BpuMI CCSGG 2 cut(s) 370, 485
BsaBI GATNNNNATC 1 cut(s) 358
BsaI GGTCTC 1 cut(s) 807
Bsc4I CCNNNNNNNGG 1 cut(s) 466
Bse1I ACTGG 2 cut(s) 144, 173
Bse21I CCTNAGG 1 cut(s) 515
Bse8I GATNNNNATC 1 cut(s) 358
BseGI GGATG 3 cut(s) 721, 727, 784
BseJI GATNNNNATC 1 cut(s) 358
BseLI CCNNNNNNNGG 1 cut(s) 466
BseMII CTCAG 2 cut(s) 281, 823
BseNI ACTGG 2 cut(s) 144, 173
BseRI GAGGAG 2 cut(s) 623, 926
BseXI GCAGC 2 cut(s) 193, 688
BsgI GTGCAG 1 cut(s) 200
Bsh1285I CGRYCG 1 cut(s) 606
BshFI GGCC 3 cut(s) 80, 373, 620
BsiEI CGRYCG 1 cut(s) 606
BsiSI CCGG 2 cut(s) 369, 484
BslI CCNNNNNNNGG 1 cut(s) 466
BsmAI GTCTC 4 cut(s) 238, 469, 541, 807
BsmI GAATGC 1 cut(s) 808
BsnI GGCC 3 cut(s) 80, 373, 620
Bso31I GGTCTC 1 cut(s) 807
Bsp119I TTCGAA 1 cut(s) 464
Bsp143I GATC 5 cut(s) 203, 293, 353, 603, 781
BspACI CCGC 2 cut(s) 225, 927
BspANI GGCC 3 cut(s) 80, 373, 620
BspCNI CTCAG 2 cut(s) 280, 822
BspHI TCATGA 1 cut(s) 660
BspPI GGATC 3 cut(s) 211, 361, 776
BspT104I TTCGAA 1 cut(s) 464
BspTI CTTAAG 1 cut(s) 49
BspTNI GGTCTC 1 cut(s) 807
BsrI ACTGG 2 cut(s) 144, 173
BssMI GATC 5 cut(s) 203, 293, 353, 603, 781
BssNAI GTATAC 1 cut(s) 580
BssSI CACGAG 1 cut(s) 43
Bst1107I GTATAC 1 cut(s) 580
Bst2BI CACGAG 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 340
BstAFI CTTAAG 1 cut(s) 49
BstBI TTCGAA 1 cut(s) 464
BstC8I GCNNGC 4 cut(s) 36, 655, 841, 907
BstDEI CTNAG 5 cut(s) 148, 267, 347, 515, 809
BstF5I GGATG 3 cut(s) 721, 727, 784
BstKTI GATC 5 cut(s) 206, 296, 356, 606, 784
BstMAI GTCTC 4 cut(s) 238, 469, 541, 807
BstMBI GATC 5 cut(s) 203, 293, 353, 603, 781
BstMCI CGRYCG 1 cut(s) 606
BstNSI RCATGY 2 cut(s) 88, 431
BstSCI CCNGG 2 cut(s) 368, 483
BstV1I GCAGC 2 cut(s) 193, 688
BstV2I GAAGAC 1 cut(s) 602
BstX2I RGATCY 2 cut(s) 203, 353
BstXI CCANNNNNNTGG 1 cut(s) 89
BstYI RGATCY 2 cut(s) 203, 353
BstZ17I GTATAC 1 cut(s) 580
Bsu36I CCTNAGG 1 cut(s) 515
BsuRI GGCC 3 cut(s) 80, 373, 620
BtsCI GGATG 3 cut(s) 721, 727, 784
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 1 cut(s) 696
Cac8I GCNNGC 4 cut(s) 36, 655, 841, 907
CciI TCATGA 1 cut(s) 660
Cfr13I GGNCC 4 cut(s) 79, 312, 371, 519
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 7 cut(s) 85, 89, 254, 260, 428, 661, 786
DdeI CTNAG 5 cut(s) 148, 267, 347, 515, 809
DpnI GATC 5 cut(s) 205, 295, 355, 605, 783
DpnII GATC 5 cut(s) 203, 293, 353, 603, 781
DraIII CACNNNGTG 1 cut(s) 323
Eco31I GGTCTC 1 cut(s) 807
Eco47I GGWCC 2 cut(s) 312, 519
Eco81I CCTNAGG 1 cut(s) 515
EcoRI GAATTC 1 cut(s) 93
EcoT22I ATGCAT 2 cut(s) 6, 90
FaeI CATG 7 cut(s) 88, 92, 257, 263, 431, 664, 789
FalI AAGNNNNNCTT 2 cut(s) 340, 372
FatI CATG 7 cut(s) 84, 88, 253, 259, 427, 660, 785
FblI GTMKAC 1 cut(s) 579
Fnu4HI GCNGC 2 cut(s) 182, 702
FokI GGATG 3 cut(s) 728, 734, 791
Fsp4HI GCNGC 2 cut(s) 182, 702
FspBI CTAG 3 cut(s) 396, 792, 849
GluI GCNGC 2 cut(s) 182, 702
HaeIII GGCC 3 cut(s) 80, 373, 620
HapII CCGG 2 cut(s) 369, 484
Hin1II CATG 7 cut(s) 88, 92, 257, 263, 431, 664, 789
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HindIII AAGCTT 2 cut(s) 491, 552
HinfI GANTC 3 cut(s) 365, 446, 900
HpaII CCGG 2 cut(s) 369, 484
HphI GGTGA 2 cut(s) 335, 441
Hpy166II GTNNAC 3 cut(s) 312, 343, 580
Hpy188I TCNGA 7 cut(s) 208, 303, 364, 568, 742, 768, 812
Hpy188III TCNNGA 6 cut(s) 291, 661, 677, 776, 872, 893
Hpy8I GTNNAC 3 cut(s) 312, 343, 580
HpyAV CCTTC 2 cut(s) 298, 460
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4V TGCA 7 cut(s) 4, 88, 116, 181, 572, 806, 839
HpyF3I CTNAG 5 cut(s) 148, 267, 347, 515, 809
Hsp92II CATG 7 cut(s) 88, 92, 257, 263, 431, 664, 789
Kzo9I GATC 5 cut(s) 203, 293, 353, 603, 781
LpnPI CCDG 9 cut(s) 20, 125, 154, 233, 382, 497, 706, 761, 906
Lsp1109I GCAGC 2 cut(s) 193, 688
LweI GCATC 2 cut(s) 559, 666
MaeI CTAG 3 cut(s) 396, 792, 849
MaeIII GTNAC 1 cut(s) 270
MalI GATC 5 cut(s) 205, 295, 355, 605, 783
MboI GATC 5 cut(s) 203, 293, 353, 603, 781
MboII GAAGA 4 cut(s) 348, 426, 607, 739
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 2 cut(s) 203, 353
MluCI AATT 7 cut(s) 93, 573, 590, 750, 821, 828, 930
MmeI TCCRAC 1 cut(s) 594
MnlI CCTC 8 cut(s) 70, 276, 404, 601, 610, 703, 904, 907
Mph1103I ATGCAT 2 cut(s) 6, 90
MseI TTAA 6 cut(s) 50, 72, 159, 401, 495, 936
MslI CAYNNNNRTG 3 cut(s) 87, 258, 432
MspCI CTTAAG 1 cut(s) 49
MspI CCGG 2 cut(s) 369, 484
MspR9I CCNGG 2 cut(s) 370, 485
MunI CAATTG 1 cut(s) 573
Mva1269I GAATGC 1 cut(s) 808
NciI CCSGG 2 cut(s) 370, 485
NdeII GATC 5 cut(s) 203, 293, 353, 603, 781
NlaIII CATG 7 cut(s) 88, 92, 257, 263, 431, 664, 789
NsiI ATGCAT 2 cut(s) 6, 90
NspI RCATGY 2 cut(s) 88, 431
NspV TTCGAA 1 cut(s) 464
PagI TCATGA 1 cut(s) 660
PctI GAATGC 1 cut(s) 808
PfeI GAWTC 3 cut(s) 365, 446, 900
PkrI GCNGC 2 cut(s) 183, 703
Ple19I CGATCG 1 cut(s) 606
PshBI ATTAAT 1 cut(s) 936
PspPI GGNCC 4 cut(s) 79, 312, 371, 519
PsuI RGATCY 2 cut(s) 203, 353
PvuI CGATCG 1 cut(s) 606
RseI CAYNNNNRTG 3 cut(s) 87, 258, 432
SaqAI TTAA 6 cut(s) 50, 72, 159, 401, 495, 936
SatI GCNGC 2 cut(s) 182, 702
Sau3AI GATC 5 cut(s) 203, 293, 353, 603, 781
Sau96I GGNCC 4 cut(s) 79, 312, 371, 519
ScrFI CCNGG 2 cut(s) 370, 485
SfaNI GCATC 2 cut(s) 559, 666
SfuI TTCGAA 1 cut(s) 464
SinI GGWCC 2 cut(s) 312, 519
SmiMI CAYNNNNRTG 3 cut(s) 87, 258, 432
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 7 cut(s) 93, 573, 590, 750, 821, 828, 930
SsiI CCGC 2 cut(s) 225, 927
SspI AATATT 1 cut(s) 673
SspMI CTAG 3 cut(s) 396, 792, 849
StyD4I CCNGG 2 cut(s) 368, 483
TaaI ACNGT 1 cut(s) 340
TaqI TCGA 4 cut(s) 464, 557, 606, 754
TasI AATT 7 cut(s) 93, 573, 590, 750, 821, 828, 930
TfiI GAWTC 3 cut(s) 365, 446, 900
Tru1I TTAA 6 cut(s) 50, 72, 159, 401, 495, 936
Tru9I TTAA 6 cut(s) 50, 72, 159, 401, 495, 936
TscAI CASTG 1 cut(s) 703
TseI GCWGC 2 cut(s) 181, 701
TspDTI ATGAA 5 cut(s) 248, 348, 393, 815, 821
TspGWI ACGGA 1 cut(s) 511
TspRI CASTG 1 cut(s) 703
Vha464I CTTAAG 1 cut(s) 49
VpaK11BI GGWCC 2 cut(s) 312, 519
VspI ATTAAT 1 cut(s) 936
XapI RAATTY 2 cut(s) 93, 828
XceI RCATGY 2 cut(s) 88, 431
XmiI GTMKAC 1 cut(s) 579
XspI CTAG 3 cut(s) 396, 792, 849
Zsp2I ATGCAT 2 cut(s) 6, 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.