MD11G1254100.v1.1
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000212
Physical Location & Seq
Reverse (-)
36656099 .. 36657638
1540 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1254100.v1.1.491

Sequence Viewer

Length: 1218 bp
ATGGCAAATACTATGGAAGAAATCTTATCCTCGTGCTGTCCACCCGATTTCTGCCAAGAAACCACATTTCAACAGCGCCTACAGTTCATAGTTCAGAACGTGCCTGAGTGGTGGGTGTATTCCATTTTCTGGCGAGCCTCCAAAGACAGTAGTGACCAAGTTTCCCTGTCGTGGGCTGGCGGACATTTTCAGAACACCCACGACCACTTGGCATCAAAAAGAAGCAATCAAGTGACCAGCAGTTACCAACCCAAATTTGGGTTCAACAATGTGGAGGGGAAGAAGGTGATTAACCGGGAAGTTGAAGCTCTTTTGCATGATGACGTAATGGATTTGGACATGAGGCTGGTGGATCATGGAGATGTCACTGACTCCGAGTTGTTTTACTTTTACACCGTTTCTTTAACCCAGTCATTCTCAGCAAGCCACGGTAATAATAGTAACAATATTTTCGGCAGGGCATTTGGTTCTGGTGGGTTTGTTTGGCTTGCAGGTGACCATGAATTTCAGTTTTACGAGTGTGAGAGAGTGAAAGAGGCAAGAATGCATGGAATCCAAACTTTGGTTTGCATTGCAACTCCTTGTGGGGTGGTTGAACTGGCCTCTTTGGATGTGATCAAAGAAGATTACGGTCTAGTACACTTATCAAAGTCACTGTTCGGATCAGACGGCAATAACAACAACAACAGCAGGCTCTCAAAGCAGCAGACCAGTCGTGAAGGCAATATACTTGTTCCTATCCTGGAAAATGAACTGTTCTCAGCAGATCAAAATGAACTGACCCGACAAGATCAAGGTGGAATAAAAGAAGCTGCACCTATCAATGTAGGAGGGTCATCGCTAGAATCACCTTCCAACTCCATTGGCAATTTCACCTCCGAGAATACTGAGAACATGACTCGATCAAAAAAGCGAGGAAGATCATCAAACAATGGAGCTGCAAGTAGAGAATCACAATTGTCAAACCATGTTGAGGCGAGAAACAAAGGAGGGAGAAACTCAACGACAGATTCTGTGTCCTCCGGTCAGTTGTTCCCAATGTGTCCAAAATGGACAGGTCCTCTTTGCTTGCCGATGCCGTGGCGTACATCAATCAACTCAAATCAAAAGTTGAGGAGTTGGAGGCCAAAGTCCAAGAACAAGCACAAAAACCTAAAGCGGGCAATAATGCAAGTAACAATCTTGATCATCACTCCAGCCAAAGCACCAGCTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

406

Amino Acids

45.16

Weight (kDa)

7.16

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 24 - 220 7.4e-41 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 482
Acc36I ACCTGC 1 cut(s) 482
AccB7I CCANNNNNTGG 2 cut(s) 129, 562
AciI CCGC 2 cut(s) 180, 1159
AclWI GGATC 2 cut(s) 360, 670
AcsI RAATTY 2 cut(s) 254, 503
AfaI GTAC 2 cut(s) 639, 1087
AfiI CCNNNNNNNGG 8 cut(s) 129, 171, 172, 257, 258, 562, 973, 1159
AgsI TTSAA 4 cut(s) 71, 265, 305, 596
AjnI CCWGG 1 cut(s) 741
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AluBI AGCT 4 cut(s) 308, 812, 938, 1211
AluI AGCT 4 cut(s) 308, 812, 938, 1211
AlwI GGATC 2 cut(s) 360, 670
AlwNI CAGNNNCTG 1 cut(s) 1013
AoxI GGCC 2 cut(s) 600, 1124
ApeKI GCWGC 3 cut(s) 703, 812, 938
ApoI RAATTY 2 cut(s) 254, 503
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 1058
AsuC2I CCSGG 1 cut(s) 296
AsuHPI GGTGA 4 cut(s) 298, 506, 840, 865
AvaII GGWCC 1 cut(s) 1058
BarI GAAGNNNNNNTAC 2 cut(s) 711, 743
BauI CACGAG 1 cut(s) 31
BbvI GCAGC 3 cut(s) 715, 799, 925
BceAI ACGGC 2 cut(s) 685, 1063
BcgI CGANNNNNNTGC 2 cut(s) 695, 729
BciT130I CCWGG 1 cut(s) 743
BclI TGATCA 2 cut(s) 615, 1185
BcnI CCSGG 1 cut(s) 296
BfaI CTAG 2 cut(s) 635, 842
BfmI CTRYAG 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 79
BfuAI ACCTGC 1 cut(s) 482
BisI GCNGC 3 cut(s) 704, 813, 939
BlsI GCNGC 3 cut(s) 705, 814, 940
Bme1390I CCNGG 2 cut(s) 296, 743
Bme18I GGWCC 1 cut(s) 1058
BmgT120I GGNCC 1 cut(s) 1058
BmrFI CCNGG 2 cut(s) 296, 743
BmrI ACTGGG 1 cut(s) 403
BmsI GCATC 2 cut(s) 221, 1065
BmuI ACTGGG 1 cut(s) 403
BpmI CTGGAG 1 cut(s) 1179
BpuMI CCSGG 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 427, 1079
BsaWI WCCGGW 1 cut(s) 1022
Bsc4I CCNNNNNNNGG 8 cut(s) 129, 171, 172, 257, 258, 562, 973, 1159
Bse1I ACTGG 3 cut(s) 409, 603, 711
Bse3DI GCAATG 1 cut(s) 570
BseBI CCWGG 1 cut(s) 743
BseDI CCNNGG 2 cut(s) 427, 1079
BseGI GGATG 1 cut(s) 616
BseLI CCNNNNNNNGG 8 cut(s) 129, 171, 172, 257, 258, 562, 973, 1159
BseMI GCAATG 1 cut(s) 570
BseMII CTCAG 4 cut(s) 96, 432, 774, 879
BseNI ACTGG 3 cut(s) 409, 603, 711
BseRI GAGGAG 1 cut(s) 1129
BseXI GCAGC 3 cut(s) 715, 799, 925
BsgI GTGCAG 1 cut(s) 798
BshFI GGCC 2 cut(s) 602, 1126
BsiSI CCGG 2 cut(s) 295, 1023
BslI CCNNNNNNNGG 8 cut(s) 129, 171, 172, 257, 258, 562, 973, 1159
BsmI GAATGC 1 cut(s) 549
BsnI GGCC 2 cut(s) 602, 1126
Bsp143I GATC 8 cut(s) 352, 615, 662, 766, 790, 902, 920, 1185
BspACI CCGC 2 cut(s) 180, 1159
BspANI GGCC 2 cut(s) 602, 1126
BspCNI CTCAG 4 cut(s) 97, 431, 773, 880
BspMI ACCTGC 1 cut(s) 482
BspPI GGATC 2 cut(s) 360, 670
BsrDI GCAATG 1 cut(s) 570
BsrI ACTGG 3 cut(s) 409, 603, 711
BssECI CCNNGG 2 cut(s) 427, 1079
BssMI GATC 8 cut(s) 352, 615, 662, 766, 790, 902, 920, 1185
BssSI CACGAG 1 cut(s) 31
Bst2BI CACGAG 1 cut(s) 31
Bst2UI CCWGG 1 cut(s) 743
Bst4CI ACNGT 7 cut(s) 84, 149, 397, 431, 632, 657, 756
BstC8I GCNNGC 7 cut(s) 135, 178, 424, 489, 692, 1070, 1161
BstDEI CTNAG 4 cut(s) 105, 418, 760, 888
BstDSI CCRYGG 2 cut(s) 427, 1079
BstEII GGTNACC 1 cut(s) 494
BstF5I GGATG 1 cut(s) 616
BstH2I RGCGCY 1 cut(s) 79
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 8 cut(s) 355, 618, 665, 769, 793, 905, 923, 1188
BstMBI GATC 8 cut(s) 352, 615, 662, 766, 790, 902, 920, 1185
BstMWI GCNNNNNNNGC 1 cut(s) 700
BstNI CCWGG 1 cut(s) 743
BstPI GGTNACC 1 cut(s) 494
BstSCI CCNGG 2 cut(s) 294, 741
BstSFI CTRYAG 1 cut(s) 80
BstV1I GCAGC 3 cut(s) 715, 799, 925
BsuRI GGCC 2 cut(s) 602, 1126
BtgI CCRYGG 2 cut(s) 427, 1079
BtgZI GCGATG 1 cut(s) 822
BtsCI GGATG 1 cut(s) 616
BtsIMutI CAGTG 2 cut(s) 366, 653
BveI ACCTGC 1 cut(s) 482
Cac8I GCNNGC 7 cut(s) 135, 178, 424, 489, 692, 1070, 1161
CaiI CAGNNNCTG 1 cut(s) 1013
CfoI GCGC 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 1058
Csp6I GTAC 2 cut(s) 638, 1086
CviAII CATG 7 cut(s) 317, 340, 356, 500, 548, 895, 968
CviQI GTAC 2 cut(s) 638, 1086
DdeI CTNAG 4 cut(s) 105, 418, 760, 888
DpnI GATC 8 cut(s) 354, 617, 664, 768, 792, 904, 922, 1187
DpnII GATC 8 cut(s) 352, 615, 662, 766, 790, 902, 920, 1185
EciI GGCGGA 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 1058
Eco91I GGTNACC 1 cut(s) 494
EcoO109I RGGNCCY 1 cut(s) 1058
EcoO65I GGTNACC 1 cut(s) 494
EcoRII CCWGG 1 cut(s) 741
EcoT22I ATGCAT 1 cut(s) 549
FaeI CATG 7 cut(s) 320, 343, 359, 503, 551, 898, 971
FatI CATG 7 cut(s) 316, 339, 355, 499, 547, 894, 967
FauI CCCGC 1 cut(s) 1152
FbaI TGATCA 2 cut(s) 615, 1185
Fnu4HI GCNGC 3 cut(s) 704, 813, 939
FokI GGATG 1 cut(s) 623
Fsp4HI GCNGC 3 cut(s) 704, 813, 939
FspBI CTAG 2 cut(s) 635, 842
GlaI GCGC 1 cut(s) 77
GluI GCNGC 3 cut(s) 704, 813, 939
GsuI CTGGAG 1 cut(s) 1179
HaeII RGCGCY 1 cut(s) 79
HaeIII GGCC 2 cut(s) 602, 1126
HapII CCGG 2 cut(s) 295, 1023
HhaI GCGC 1 cut(s) 78
Hin1II CATG 7 cut(s) 320, 343, 359, 503, 551, 898, 971
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HinfI GANTC 6 cut(s) 371, 552, 845, 898, 950, 1010
HpaII CCGG 2 cut(s) 295, 1023
HphI GGTGA 4 cut(s) 298, 506, 840, 865
Hpy166II GTNNAC 2 cut(s) 41, 640
Hpy188I TCNGA 6 cut(s) 96, 192, 376, 662, 667, 880
Hpy188III TCNNGA 2 cut(s) 716, 1183
Hpy8I GTNNAC 2 cut(s) 41, 640
HpyAV CCTTC 3 cut(s) 277, 713, 861
HpyCH4III ACNGT 7 cut(s) 84, 149, 397, 431, 632, 657, 756
HpyCH4IV ACGT 2 cut(s) 99, 324
HpyCH4V TGCA 8 cut(s) 316, 491, 547, 570, 575, 815, 941, 1171
HpyF10VI GCNNNNNNNGC 1 cut(s) 700
HpyF3I CTNAG 4 cut(s) 105, 418, 760, 888
HpySE526I ACGT 2 cut(s) 99, 324
Hsp92II CATG 7 cut(s) 320, 343, 359, 503, 551, 898, 971
HspAI GCGC 1 cut(s) 76
Ksp22I TGATCA 2 cut(s) 615, 1185
Kzo9I GATC 8 cut(s) 352, 615, 662, 766, 790, 902, 920, 1185
LmnI GCTCC 2 cut(s) 935, 1216
Lsp1109I GCAGC 3 cut(s) 715, 799, 925
LweI GCATC 2 cut(s) 221, 1065
MaeI CTAG 2 cut(s) 635, 842
MaeII ACGT 2 cut(s) 99, 324
MaeIII GTNAC 8 cut(s) 152, 232, 242, 364, 440, 494, 651, 1174
MalI GATC 8 cut(s) 354, 617, 664, 768, 792, 904, 922, 1187
MboI GATC 8 cut(s) 352, 615, 662, 766, 790, 902, 920, 1185
MboII GAAGA 4 cut(s) 29, 292, 635, 930
MfeI CAATTG 1 cut(s) 956
MluCI AATT 4 cut(s) 254, 503, 868, 956
MlyI GAGTC 2 cut(s) 365, 892
MmeI TCCRAC 2 cut(s) 879, 1100
Mph1103I ATGCAT 1 cut(s) 549
MseI TTAA 2 cut(s) 291, 404
MslI CAYNNNNRTG 1 cut(s) 360
MspI CCGG 2 cut(s) 295, 1023
MspR9I CCNGG 2 cut(s) 296, 743
MunI CAATTG 1 cut(s) 956
Mva1269I GAATGC 1 cut(s) 549
MvaI CCWGG 1 cut(s) 743
MwoI GCNNNNNNNGC 1 cut(s) 700
NciI CCSGG 1 cut(s) 296
NdeII GATC 8 cut(s) 352, 615, 662, 766, 790, 902, 920, 1185
NlaIII CATG 7 cut(s) 320, 343, 359, 503, 551, 898, 971
NmuCI GTSAC 5 cut(s) 152, 232, 364, 494, 651
NsiI ATGCAT 1 cut(s) 549
PaqCI CACCTGC 1 cut(s) 482
PctI GAATGC 1 cut(s) 549
PfeI GAWTC 4 cut(s) 552, 845, 950, 1010
PflMI CCANNNNNTGG 2 cut(s) 129, 562
PfoI TCCNGGA 1 cut(s) 741
PkrI GCNGC 3 cut(s) 705, 814, 940
PleI GAGTC 2 cut(s) 365, 892
PpsI GAGTC 2 cut(s) 365, 892
PpuMI RGGWCCY 1 cut(s) 1058
Psp5II RGGWCCY 1 cut(s) 1058
Psp6I CCWGG 1 cut(s) 741
PspEI GGTNACC 1 cut(s) 494
PspGI CCWGG 1 cut(s) 741
PspPI GGNCC 1 cut(s) 1058
PspPPI RGGWCCY 1 cut(s) 1058
PstNI CAGNNNCTG 1 cut(s) 1013
RsaI GTAC 2 cut(s) 639, 1087
RsaNI GTAC 2 cut(s) 638, 1086
RseI CAYNNNNRTG 1 cut(s) 360
SaqAI TTAA 2 cut(s) 291, 404
SatI GCNGC 3 cut(s) 704, 813, 939
Sau3AI GATC 8 cut(s) 352, 615, 662, 766, 790, 902, 920, 1185
Sau96I GGNCC 1 cut(s) 1058
SchI GAGTC 2 cut(s) 365, 892
ScrFI CCNGG 2 cut(s) 296, 743
SfaNI GCATC 2 cut(s) 221, 1065
SfcI CTRYAG 1 cut(s) 80
SinI GGWCC 1 cut(s) 1058
SmiMI CAYNNNNRTG 1 cut(s) 360
Sse9I AATT 4 cut(s) 254, 503, 868, 956
SsiI CCGC 2 cut(s) 180, 1159
SspI AATATT 1 cut(s) 448
SspMI CTAG 2 cut(s) 635, 842
StyD4I CCNGG 2 cut(s) 294, 741
TaaI ACNGT 7 cut(s) 84, 149, 397, 431, 632, 657, 756
TaiI ACGT 2 cut(s) 102, 327
TaqI TCGA 1 cut(s) 901
TasI AATT 4 cut(s) 254, 503, 868, 956
TatI WGTACW 1 cut(s) 637
TfiI GAWTC 4 cut(s) 552, 845, 950, 1010
Tru1I TTAA 2 cut(s) 291, 404
Tru9I TTAA 2 cut(s) 291, 404
TscAI CASTG 2 cut(s) 373, 660
TseFI GTSAC 5 cut(s) 152, 232, 364, 494, 651
TseI GCWGC 3 cut(s) 703, 812, 938
Tsp45I GTSAC 5 cut(s) 152, 232, 364, 494, 651
TspDTI ATGAA 4 cut(s) 76, 516, 765, 789
TspRI CASTG 2 cut(s) 373, 660
Van91I CCANNNNNTGG 2 cut(s) 129, 562
VpaK11BI GGWCC 1 cut(s) 1058
XapI RAATTY 2 cut(s) 254, 503
XcmI CCANNNNNNNNNTGG 1 cut(s) 254
XspI CTAG 2 cut(s) 635, 842
Zsp2I ATGCAT 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.