Rorug06G0478800
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000212
Physical Location & Seq
Reverse (-)
60058094 .. 60058507
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0478800.1

Sequence Viewer

Length: 414 bp
ATGGACTTTGAGGCGGATTGGTTGACGACATCGGTTGATGGTGGTGGTGGCGGCTTGTGGGTTCCAGATATGTTGGGTCGTGTCTCTGACAGCGGCAACTATTTAGGGGTTCTAGGCTACAGCAGTGGTTGTGCTGCATCTGGGTGTTGGTCGCAATTCTCTACTCGTGCCGGCGCTGGCAGCAACGATGCAAATTGGGACAAGGCTACCCTGTTAAAAGGGTTGGATCCGCTAAGTGGTGATGGTGGCAGTGATCATGCTGTGGTGGTGGACAACCAAGTTGTGATAGCGGCACCGGCGGCATTGCTGCTGTCGATGGAGATTCTGTGCATGCTAGGGTTTGCCATGGTTTGGAATATTGGGCCTCAAGTGGACTGGATGGATTGGGTCTCTATAGCCCATAGTGCTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

137

Amino Acids

14.23

Weight (kDa)

4.05

Isoelectric Point (pI)

26.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 292
AccB7I CCANNNNNTGG 1 cut(s) 351
AciI CCGC 6 cut(s) 14, 51, 93, 230, 290, 299
AclWI GGATC 2 cut(s) 221, 234
AfiI CCNNNNNNNGG 2 cut(s) 236, 351
Alw26I GTCTC 2 cut(s) 88, 394
AlwI GGATC 2 cut(s) 221, 234
AoxI GGCC 1 cut(s) 362
ApeKI GCWGC 3 cut(s) 134, 180, 307
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 362
AsuHPI GGTGA 1 cut(s) 251
BamHI GGATCC 1 cut(s) 226
BanI GGYRCC 1 cut(s) 292
BauI CACGAG 1 cut(s) 165
BbvI GCAGC 3 cut(s) 121, 192, 294
BccI CCATC 4 cut(s) 32, 236, 310, 373
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 88, 394
BfaI CTAG 2 cut(s) 113, 335
BfmI CTRYAG 2 cut(s) 118, 393
BfoI RGCGCY 1 cut(s) 177
BisI GCNGC 7 cut(s) 52, 94, 135, 181, 291, 300, 308
BlsI GCNGC 7 cut(s) 53, 95, 136, 182, 292, 301, 309
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 3 cut(s) 63, 228, 294
BmsI GCATC 2 cut(s) 146, 178
BpuEI CTTGAG 1 cut(s) 351
BsaI GGTCTC 1 cut(s) 394
BsaJI CCNNGG 1 cut(s) 345
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 351
Bse118I RCCGGY 2 cut(s) 170, 295
Bse1I ACTGG 1 cut(s) 380
Bse3DI GCAATG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 1 cut(s) 384
BseLI CCNNNNNNNGG 2 cut(s) 236, 351
BseMI GCAATG 1 cut(s) 302
BseNI ACTGG 1 cut(s) 380
BseXI GCAGC 3 cut(s) 121, 192, 294
BshFI GGCC 1 cut(s) 364
BshNI GGYRCC 1 cut(s) 292
BsiSI CCGG 2 cut(s) 171, 296
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 2 cut(s) 236, 351
BsmAI GTCTC 2 cut(s) 88, 394
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 1 cut(s) 364
Bso31I GGTCTC 1 cut(s) 394
Bsp143I GATC 2 cut(s) 226, 253
Bsp19I CCATGG 1 cut(s) 345
BspACI CCGC 6 cut(s) 14, 51, 93, 230, 290, 299
BspANI GGCC 1 cut(s) 364
BspLI GGNNCC 3 cut(s) 63, 228, 294
BspPI GGATC 2 cut(s) 221, 234
BspT107I GGYRCC 1 cut(s) 292
BspTNI GGTCTC 1 cut(s) 394
BsrDI GCAATG 1 cut(s) 302
BsrFI RCCGGY 2 cut(s) 170, 295
BsrI ACTGG 1 cut(s) 380
BssAI RCCGGY 2 cut(s) 170, 295
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 2 cut(s) 226, 253
BssSI CACGAG 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 345
Bst2BI CACGAG 1 cut(s) 165
BstC8I GCNNGC 3 cut(s) 172, 178, 332
BstDEI CTNAG 1 cut(s) 233
BstDSI CCRYGG 1 cut(s) 345
BstF5I GGATG 1 cut(s) 384
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 2 cut(s) 229, 256
BstMAI GTCTC 2 cut(s) 88, 394
BstMBI GATC 2 cut(s) 226, 253
BstMWI GCNNNNNNNGC 4 cut(s) 180, 296, 299, 404
BstNSI RCATGY 1 cut(s) 334
BstSFI CTRYAG 2 cut(s) 118, 393
BstV1I GCAGC 3 cut(s) 121, 192, 294
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BsuRI GGCC 1 cut(s) 364
BtgI CCRYGG 1 cut(s) 345
BtsCI GGATG 1 cut(s) 384
BtsI GCAGTG 2 cut(s) 130, 256
BtsIMutI CAGTG 2 cut(s) 130, 256
Cac8I GCNNGC 3 cut(s) 172, 178, 332
CfoI GCGC 1 cut(s) 176
Cfr10I RCCGGY 2 cut(s) 170, 295
Cfr13I GGNCC 1 cut(s) 362
CviAII CATG 3 cut(s) 257, 331, 346
CviJI RGCY 5 cut(s) 54, 117, 206, 364, 398
CviKI_1 RGCY 5 cut(s) 54, 117, 206, 364, 398
DdeI CTNAG 1 cut(s) 233
DpnI GATC 2 cut(s) 228, 255
DpnII GATC 2 cut(s) 226, 253
EciI GGCGGA 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 345
Eco31I GGTCTC 1 cut(s) 394
EcoT14I CCWWGG 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 3 cut(s) 260, 334, 349
FaiI YATR 6 cut(s) 71, 258, 332, 347, 395, 402
FaqI GGGAC 1 cut(s) 212
FatI CATG 3 cut(s) 256, 330, 345
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 7 cut(s) 52, 94, 135, 181, 291, 300, 308
FokI GGATG 1 cut(s) 391
Fsp4HI GCNGC 7 cut(s) 52, 94, 135, 181, 291, 300, 308
FspBI CTAG 2 cut(s) 113, 335
GlaI GCGC 1 cut(s) 175
GluI GCNGC 7 cut(s) 52, 94, 135, 181, 291, 300, 308
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 1 cut(s) 364
HapII CCGG 2 cut(s) 171, 296
HhaI GCGC 1 cut(s) 176
Hin1II CATG 3 cut(s) 260, 334, 349
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HinfI GANTC 1 cut(s) 322
HpaII CCGG 2 cut(s) 171, 296
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 3 cut(s) 24, 271, 373
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 3 cut(s) 24, 271, 373
HpyCH4V TGCA 3 cut(s) 137, 191, 330
HpyF10VI GCNNNNNNNGC 4 cut(s) 180, 296, 299, 404
HpyF3I CTNAG 1 cut(s) 233
Hsp92II CATG 3 cut(s) 260, 334, 349
HspAI GCGC 1 cut(s) 174
KroI GCCGGC 1 cut(s) 170
KroNI GCCGGC 1 cut(s) 172
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 2 cut(s) 226, 253
LpnPI CCDG 7 cut(s) 78, 126, 162, 184, 224, 309, 361
Lsp1109I GCAGC 3 cut(s) 121, 192, 294
LweI GCATC 2 cut(s) 146, 178
MaeI CTAG 2 cut(s) 113, 335
MalI GATC 2 cut(s) 228, 255
MboI GATC 2 cut(s) 226, 253
MflI RGATCY 1 cut(s) 226
MluCI AATT 2 cut(s) 155, 193
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 2 cut(s) 4, 375
MroNI GCCGGC 1 cut(s) 170
MseI TTAA 2 cut(s) 215, 412
MslI CAYNNNNRTG 1 cut(s) 142
MspA1I CMGCKG 1 cut(s) 93
MspI CCGG 2 cut(s) 171, 296
MwoI GCNNNNNNNGC 4 cut(s) 180, 296, 299, 404
NaeI GCCGGC 1 cut(s) 172
NcoI CCATGG 1 cut(s) 345
NdeII GATC 2 cut(s) 226, 253
NgoMIV GCCGGC 1 cut(s) 170
NlaIII CATG 3 cut(s) 260, 334, 349
NlaIV GGNNCC 3 cut(s) 63, 228, 294
NspI RCATGY 1 cut(s) 334
PaeI GCATGC 1 cut(s) 334
PdiI GCCGGC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 322
PflMI CCANNNNNTGG 1 cut(s) 351
PkrI GCNGC 7 cut(s) 53, 95, 136, 182, 292, 301, 309
PspN4I GGNNCC 3 cut(s) 63, 228, 294
PspPI GGNCC 1 cut(s) 362
PsuI RGATCY 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 142
SaqAI TTAA 2 cut(s) 215, 412
SatI GCNGC 7 cut(s) 52, 94, 135, 181, 291, 300, 308
Sau3AI GATC 2 cut(s) 226, 253
Sau96I GGNCC 1 cut(s) 362
SfaNI GCATC 2 cut(s) 146, 178
SfcI CTRYAG 2 cut(s) 118, 393
SgrAI CRCCGGYG 1 cut(s) 295
SmiMI CAYNNNNRTG 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
SphI GCATGC 1 cut(s) 334
Sse9I AATT 2 cut(s) 155, 193
SsiI CCGC 6 cut(s) 14, 51, 93, 230, 290, 299
SspI AATATT 1 cut(s) 358
SspMI CTAG 2 cut(s) 113, 335
StyI CCWWGG 1 cut(s) 345
TaqI TCGA 1 cut(s) 314
TasI AATT 2 cut(s) 155, 193
TauI GCSGC 4 cut(s) 54, 96, 293, 302
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 2 cut(s) 215, 412
Tru9I TTAA 2 cut(s) 215, 412
TscAI CASTG 2 cut(s) 130, 256
TseI GCWGC 3 cut(s) 134, 180, 307
TspRI CASTG 2 cut(s) 130, 256
Van91I CCANNNNNTGG 1 cut(s) 351
XceI RCATGY 1 cut(s) 334
XspI CTAG 2 cut(s) 113, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.