Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026563.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 580

Gene Structure 580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026563.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ttcaacaactgcgagaaagccaaagaggcccaaatccatgggatcgagaccttgatctgcatcccaacttccgacggtgttcttgaaatgggttcctccggtttgataagagagaactgggggttgttccagcaagccaagtcgttgtttgggttggatcagcccgacccagaaacaagactgctcgagttcatcaactggaacttctctatttttgacatcggcatcattaccagcgtgcaggaagaggatcacagctcgtacaatgatgacaagaaacatgtttttggttctagcaagaagaagaacggagctccgaaccaaacccagacttcgcagattccgactgctagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

118

Amino Acids

13.2

Weight (kDa)

5.08

Isoelectric Point (pI)

24.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	50, 165, 258
AfaI	GTAC	1 cut(s)	263
AflIII	ACRYGT	1 cut(s)	280
AgsI	TTSAA	2 cut(s)	4, 86
AluBI	AGCT	2 cut(s)	258, 314
AluI	AGCT	2 cut(s)	258, 314
Alw21I	GWGCWC	1 cut(s)	316
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	3 cut(s)	50, 165, 258
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	2 cut(s)	294, 351
BglI	GCCNNNNNGGC	1 cut(s)	26
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	94
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	2 cut(s)	69, 234
BmuI	ACTGGG	1 cut(s)	127
BsaBI	GATNNNNATC	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	37
BsaWI	WCCGGW	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	122, 203
Bse8I	GATNNNNATC	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	1 cut(s)	60
BseJI	GATNNNNATC	1 cut(s)	59
BseNI	ACTGG	2 cut(s)	122, 203
BsgI	GTGCAG	1 cut(s)	260
BshFI	GGCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	316
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	99
BsmAI	GTCTC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	29
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	4 cut(s)	42, 54, 157, 250
Bsp19I	CCATGG	1 cut(s)	37
BspANI	GGCC	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	94
BspPI	GGATC	3 cut(s)	50, 165, 258
BspTNI	GGTCTC	1 cut(s)	41
BsrI	ACTGG	2 cut(s)	122, 203
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	4 cut(s)	42, 54, 157, 250
BssT1I	CCWWGG	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	240
BstC8I	GCNNGC	2 cut(s)	135, 239
BstDSI	CCRYGG	1 cut(s)	37
BstF5I	GGATG	1 cut(s)	60
BstKTI	GATC	4 cut(s)	45, 57, 160, 253
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	4 cut(s)	42, 54, 157, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	284
BstXI	CCANNNNNNTGG	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	29
BtgI	CCRYGG	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	60
Cac8I	GCNNGC	2 cut(s)	135, 239
Cfr13I	GGNCC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	2 cut(s)	38, 281
CviJI	RGCY	6 cut(s)	20, 29, 137, 163, 258, 314
CviKI_1	RGCY	6 cut(s)	20, 29, 137, 163, 258, 314
CviQI	GTAC	1 cut(s)	262
DpnI	GATC	4 cut(s)	44, 56, 159, 252
DpnII	GATC	4 cut(s)	42, 54, 157, 250
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Ecl136II	GAGCTC	1 cut(s)	314
Eco130I	CCWWGG	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	316
Eco31I	GGTCTC	1 cut(s)	41
Eco53kI	GAGCTC	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	2 cut(s)	41, 284
FaiI	YATR	2 cut(s)	39, 282
FatI	CATG	2 cut(s)	37, 280
FokI	GGATG	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	316
FspBI	CTAG	2 cut(s)	294, 351
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	2 cut(s)	41, 284
HinfI	GANTC	1 cut(s)	340
HpaII	CCGG	1 cut(s)	99
Hpy188I	TCNGA	3 cut(s)	73, 318, 345
Hpy188III	TCNNGA	2 cut(s)	46, 83
Hpy99I	CGWCG	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4V	TGCA	2 cut(s)	60, 241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	41, 284
Kzo9I	GATC	4 cut(s)	42, 54, 157, 250
LmnI	GCTCC	2 cut(s)	311, 319
LpnPI	CCDG	8 cut(s)	103, 112, 143, 183, 184, 227, 247, 341
LweI	GCATC	2 cut(s)	69, 234
MaeI	CTAG	2 cut(s)	294, 351
MalI	GATC	4 cut(s)	44, 56, 159, 252
MboI	GATC	4 cut(s)	42, 54, 157, 250
MboII	GAAGA	3 cut(s)	257, 313, 316
MhlI	GDGCHC	1 cut(s)	316
MmeI	TCCRAC	2 cut(s)	96, 135
MnlI	CCTC	3 cut(s)	19, 106, 241
MspI	CCGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	37
NdeII	GATC	4 cut(s)	42, 54, 157, 250
NlaIII	CATG	2 cut(s)	41, 284
NlaIV	GGNNCC	1 cut(s)	94
NspI	RCATGY	1 cut(s)	284
PaeR7I	CTCGAG	1 cut(s)	185
PciI	ACATGT	1 cut(s)	280
PcsI	WCGNNNNNNNCGW	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	340
PscI	ACATGT	1 cut(s)	280
Psp124BI	GAGCTC	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	28
PspXI	VCTCGAGB	1 cut(s)	185
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SacI	GAGCTC	1 cut(s)	316
Sau3AI	GATC	4 cut(s)	42, 54, 157, 250
Sau96I	GGNCC	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	3 cut(s)	53, 260, 316
SfaNI	GCATC	2 cut(s)	69, 234
Sfr274I	CTCGAG	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SspMI	CTAG	2 cut(s)	294, 351
SstI	GAGCTC	1 cut(s)	316
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	77
TaqI	TCGA	2 cut(s)	45, 186
TfiI	GAWTC	1 cut(s)	340
TspDTI	ATGAA	1 cut(s)	181
TspGWI	ACGGA	1 cut(s)	324
XceI	RCATGY	1 cut(s)	284
XhoI	CTCGAG	1 cut(s)	185
XspI	CTAG	2 cut(s)	294, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.