Rmu_sc0001937.1_g000001
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001937.1
OG0000212
Physical Location & Seq
Reverse (-)
3595 .. 6055
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001937.1_g000001.1.cds

Sequence Viewer

Length: 846 bp
atgccctcagttctgtttttttttttaataattttttttccttcgtttttatctctttcttcttccttcttccgggctcactccctcactcgatctttcgccgtcggggacggctctgttccaggcaaggccttctgctctgggacctcaatctggctgagtggggcccacgagcttcagttcaacaattgcgagagagccaaagaggcccaaatccactggatcgagaccttgatctgcatcccaacttctgacggtgttcttgaaatgggttcctccggcgtgcaggaagaggatcacagctcgtacaatgacgacaagaaacatgttcttggttctagcaagaagaagaacggagctccgaacccaaacccggacttcgcagattccgactgccagatgaaaagagcgccgaagaaacagggccggaaaccagggctgggccgagacacgccgctcaaccacgtggaggcggagcggcagcgacgggagaagctcacctcgcaagggcggcgttggaagcgagcgagtgagcgtggaagtgaggaaggtggcgttggaagcgagggactgcgagtgggaaacgtcggcatcgttttggggatggtgatcctcgttgtcttaggaatcgatggctgcggtggcatcgttgtcgtctatgttggtgtccgaatctactggttttggaggagtaccaatagctactatggatatggaggcatggtggaaagcgaagaaatcaaggatgaagttggtgagagagaggagacgggggtcgagagaaggagagagagcgaaagactgatagcctccaaagccatcaaaacccagaaacctgaaaactag

Protein Analysis

281

Amino Acids

31.12

Weight (kDa)

8.22

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 457, 478
AciI CCGC 5 cut(s) 455, 473, 478, 511, 639
AclWI GGATC 3 cut(s) 230, 303, 604
AcuI CTGAAG 1 cut(s) 161
AcvI CACGTG 1 cut(s) 466
AfaI GTAC 2 cut(s) 308, 694
AfiI CCNNNNNNNGG 6 cut(s) 72, 153, 373, 440, 469, 507
AflIII ACRYGT 1 cut(s) 325
AgsI TTSAA 2 cut(s) 184, 266
AjnI CCWGG 2 cut(s) 121, 433
AjuI GAANNNNNNNTTGG 2 cut(s) 540, 572
AluBI AGCT 5 cut(s) 175, 303, 359, 496, 702
AluI AGCT 5 cut(s) 175, 303, 359, 496, 702
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 3 cut(s) 221, 441, 761
AlwI GGATC 3 cut(s) 230, 303, 604
AoxI GGCC 5 cut(s) 129, 165, 207, 424, 442
ApaI GGGCCC 1 cut(s) 169
ApeKI GCWGC 2 cut(s) 481, 636
AspLEI GCGC 1 cut(s) 412
AspS9I GGNCC 6 cut(s) 144, 165, 166, 208, 424, 442
AsuC2I CCSGG 2 cut(s) 74, 374
AsuHPI GGTGA 3 cut(s) 490, 619, 767
AvaII GGWCC 1 cut(s) 144
BaeGI GKGCMC 1 cut(s) 169
BanII GRGCYC 3 cut(s) 79, 169, 361
BauI CACGAG 1 cut(s) 170
BbrPI CACGTG 1 cut(s) 466
Bbv12I GWGCWC 1 cut(s) 361
BbvI GCAGC 2 cut(s) 493, 623
BccI CCATC 3 cut(s) 598, 626, 827
BceAI ACGGC 2 cut(s) 86, 127
BcgI CGANNNNNNTGC 2 cut(s) 634, 668
BciT130I CCWGG 2 cut(s) 123, 435
BcnI CCSGG 2 cut(s) 74, 374
BcoDI GTCTC 3 cut(s) 221, 441, 761
BfaI CTAG 2 cut(s) 339, 844
BfoI RGCGCY 1 cut(s) 413
BglI GCCNNNNNGGC 1 cut(s) 206
BisI GCNGC 5 cut(s) 455, 479, 482, 512, 637
BlsI GCNGC 5 cut(s) 456, 480, 483, 513, 638
Bme1390I CCNGG 4 cut(s) 74, 123, 374, 435
Bme18I GGWCC 1 cut(s) 144
BmgT120I GGNCC 6 cut(s) 144, 165, 166, 208, 424, 442
BmiI GGNNCC 4 cut(s) 145, 166, 167, 274
BmrFI CCNGG 4 cut(s) 74, 123, 374, 435
BmsI GCATC 3 cut(s) 249, 600, 654
BoxI GACNNNNGTC 1 cut(s) 773
BpuMI CCSGG 2 cut(s) 74, 374
Bsa29I ATCGAT 1 cut(s) 630
BsaAI YACGTR 1 cut(s) 466
BsaBI GATNNNNATC 2 cut(s) 239, 608
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 434
BsaXI ACNNNNNCTCC 2 cut(s) 708, 738
Bsc4I CCNNNNNNNGG 6 cut(s) 72, 153, 373, 440, 469, 507
Bse1I ACTGG 2 cut(s) 224, 683
Bse8I GATNNNNATC 2 cut(s) 239, 608
BseBI CCWGG 2 cut(s) 123, 435
BseCI ATCGAT 1 cut(s) 630
BseDI CCNNGG 1 cut(s) 434
BseGI GGATG 3 cut(s) 240, 609, 751
BseJI GATNNNNATC 2 cut(s) 239, 608
BseLI CCNNNNNNNGG 6 cut(s) 72, 153, 373, 440, 469, 507
BseMII CTCAG 2 cut(s) 21, 149
BseNI ACTGG 2 cut(s) 224, 683
BseRI GAGGAG 2 cut(s) 703, 779
BseSI GKGCMC 1 cut(s) 169
BseXI GCAGC 2 cut(s) 493, 623
BseYI CCCAGC 1 cut(s) 439
BsgI GTGCAG 1 cut(s) 305
BshFI GGCC 5 cut(s) 131, 167, 209, 426, 444
BshVI ATCGAT 1 cut(s) 630
BsiHKAI GWGCWC 1 cut(s) 361
BsiSI CCGG 4 cut(s) 73, 279, 374, 427
BslFI GGGAC 3 cut(s) 122, 157, 582
BslI CCNNNNNNNGG 6 cut(s) 72, 153, 373, 440, 469, 507
BsmAI GTCTC 3 cut(s) 221, 441, 761
BsmBI CGTCTC 1 cut(s) 761
BsmFI GGGAC 3 cut(s) 122, 157, 582
BsnI GGCC 5 cut(s) 131, 167, 209, 426, 444
Bso31I GGTCTC 1 cut(s) 221
Bsp120I GGGCCC 1 cut(s) 165
Bsp1286I GDGCHC 3 cut(s) 79, 169, 361
Bsp143I GATC 5 cut(s) 92, 222, 234, 295, 609
BspACI CCGC 5 cut(s) 455, 473, 478, 511, 639
BspANI GGCC 5 cut(s) 131, 167, 209, 426, 444
BspCNI CTCAG 2 cut(s) 20, 150
BspDI ATCGAT 1 cut(s) 630
BspLI GGNNCC 4 cut(s) 145, 166, 167, 274
BspPI GGATC 3 cut(s) 230, 303, 604
BspTNI GGTCTC 1 cut(s) 221
BsrBI CCGCTC 2 cut(s) 457, 478
BsrI ACTGG 2 cut(s) 224, 683
BssECI CCNNGG 1 cut(s) 434
BssMI GATC 5 cut(s) 92, 222, 234, 295, 609
BssSI CACGAG 1 cut(s) 170
Bst2BI CACGAG 1 cut(s) 170
Bst2UI CCWGG 2 cut(s) 123, 435
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 1 cut(s) 285
BstBAI YACGTR 1 cut(s) 466
BstC8I GCNNGC 2 cut(s) 284, 525
BstDEI CTNAG 3 cut(s) 7, 158, 622
BstF5I GGATG 3 cut(s) 240, 609, 751
BstH2I RGCGCY 1 cut(s) 413
BstHHI GCGC 1 cut(s) 412
BstKTI GATC 5 cut(s) 95, 225, 237, 298, 612
BstMAI GTCTC 3 cut(s) 221, 441, 761
BstMBI GATC 5 cut(s) 92, 222, 234, 295, 609
BstMWI GCNNNNNNNGC 7 cut(s) 206, 502, 511, 520, 561, 642, 815
BstNI CCWGG 2 cut(s) 123, 435
BstNSI RCATGY 1 cut(s) 329
BstPAI GACNNNNGTC 1 cut(s) 773
BstSCI CCNGG 4 cut(s) 72, 121, 372, 433
BstSLI GKGCMC 1 cut(s) 169
BstV1I GCAGC 2 cut(s) 493, 623
Bsu15I ATCGAT 1 cut(s) 630
BsuRI GGCC 5 cut(s) 131, 167, 209, 426, 444
BsuTUI ATCGAT 1 cut(s) 630
BtsCI GGATG 3 cut(s) 240, 609, 751
BtsIMutI CAGTG 1 cut(s) 217
Cac8I GCNNGC 2 cut(s) 284, 525
CfoI GCGC 1 cut(s) 412
Cfr13I GGNCC 6 cut(s) 144, 165, 166, 208, 424, 442
ClaI ATCGAT 1 cut(s) 630
Csp6I GTAC 2 cut(s) 307, 693
CviAII CATG 2 cut(s) 326, 721
CviQI GTAC 2 cut(s) 307, 693
DdeI CTNAG 3 cut(s) 7, 158, 622
DpnI GATC 5 cut(s) 94, 224, 236, 297, 611
DpnII GATC 5 cut(s) 92, 222, 234, 295, 609
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
EciI GGCGGA 1 cut(s) 488
Ecl136II GAGCTC 1 cut(s) 359
Eco147I AGGCCT 1 cut(s) 131
Eco24I GRGCYC 3 cut(s) 79, 169, 361
Eco31I GGTCTC 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 144
Eco53kI GAGCTC 1 cut(s) 359
Eco57I CTGAAG 1 cut(s) 161
Eco72I CACGTG 1 cut(s) 466
EcoICRI GAGCTC 1 cut(s) 359
EcoO109I RGGNCCY 2 cut(s) 144, 165
EcoRII CCWGG 2 cut(s) 121, 433
EcoT38I GRGCYC 3 cut(s) 79, 169, 361
Esp3I CGTCTC 1 cut(s) 761
FaeI CATG 2 cut(s) 329, 724
FaiI YATR 5 cut(s) 327, 660, 708, 714, 722
FaqI GGGAC 3 cut(s) 122, 157, 582
FatI CATG 2 cut(s) 325, 720
Fnu4HI GCNGC 5 cut(s) 455, 479, 482, 512, 637
FokI GGATG 3 cut(s) 227, 616, 758
FriOI GRGCYC 3 cut(s) 79, 169, 361
Fsp4HI GCNGC 5 cut(s) 455, 479, 482, 512, 637
FspBI CTAG 2 cut(s) 339, 844
GlaI GCGC 1 cut(s) 411
GluI GCNGC 5 cut(s) 455, 479, 482, 512, 637
GsaI CCCAGC 1 cut(s) 443
HaeII RGCGCY 1 cut(s) 413
HaeIII GGCC 5 cut(s) 131, 167, 209, 426, 444
HapII CCGG 4 cut(s) 73, 279, 374, 427
HhaI GCGC 1 cut(s) 412
Hin1II CATG 2 cut(s) 329, 724
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HinfI GANTC 3 cut(s) 386, 627, 672
HpaII CCGG 4 cut(s) 73, 279, 374, 427
HphI GGTGA 3 cut(s) 490, 619, 767
Hpy188I TCNGA 4 cut(s) 253, 363, 391, 671
Hpy188III TCNNGA 3 cut(s) 226, 263, 778
Hpy99I CGWCG 3 cut(s) 107, 489, 590
HpyAV CCTTC 5 cut(s) 51, 76, 142, 542, 777
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 2 cut(s) 465, 585
HpyCH4V TGCA 2 cut(s) 240, 286
HpyF10VI GCNNNNNNNGC 7 cut(s) 206, 502, 511, 520, 561, 642, 815
HpyF3I CTNAG 3 cut(s) 7, 158, 622
HpySE526I ACGT 2 cut(s) 465, 585
Hsp92II CATG 2 cut(s) 329, 724
HspAI GCGC 1 cut(s) 410
Kzo9I GATC 5 cut(s) 92, 222, 234, 295, 609
LmnI GCTCC 3 cut(s) 356, 364, 475
Lsp1109I GCAGC 2 cut(s) 493, 623
LweI GCATC 3 cut(s) 249, 600, 654
MaeI CTAG 2 cut(s) 339, 844
MaeII ACGT 2 cut(s) 465, 585
MalI GATC 5 cut(s) 94, 224, 236, 297, 611
MbiI CCGCTC 2 cut(s) 457, 478
MboI GATC 5 cut(s) 92, 222, 234, 295, 609
MboII GAAGA 8 cut(s) 51, 54, 61, 302, 358, 361, 427, 746
MfeI CAATTG 1 cut(s) 187
MhlI GDGCHC 3 cut(s) 79, 169, 361
MluCI AATT 2 cut(s) 30, 187
MmeI TCCRAC 3 cut(s) 414, 497, 538
MseI TTAA 1 cut(s) 26
MspI CCGG 4 cut(s) 73, 279, 374, 427
MspR9I CCNGG 4 cut(s) 74, 123, 374, 435
MunI CAATTG 1 cut(s) 187
MvaI CCWGG 2 cut(s) 123, 435
MwoI GCNNNNNNNGC 7 cut(s) 206, 502, 511, 520, 561, 642, 815
NciI CCSGG 2 cut(s) 74, 374
NdeII GATC 5 cut(s) 92, 222, 234, 295, 609
NlaIII CATG 2 cut(s) 329, 724
NlaIV GGNNCC 4 cut(s) 145, 166, 167, 274
NmeAIII GCCGAG 1 cut(s) 470
NspI RCATGY 1 cut(s) 329
PceI AGGCCT 1 cut(s) 131
PciI ACATGT 1 cut(s) 325
PcsI WCGNNNNNNNCGW 2 cut(s) 387, 591
PfeI GAWTC 3 cut(s) 386, 627, 672
PkrI GCNGC 5 cut(s) 456, 480, 483, 513, 638
PmaCI CACGTG 1 cut(s) 466
PmlI CACGTG 1 cut(s) 466
Ppu21I YACGTR 1 cut(s) 466
PpuMI RGGWCCY 1 cut(s) 144
PscI ACATGT 1 cut(s) 325
PshAI GACNNNNGTC 1 cut(s) 773
Psp124BI GAGCTC 1 cut(s) 361
Psp5II RGGWCCY 1 cut(s) 144
Psp6I CCWGG 2 cut(s) 121, 433
PspCI CACGTG 1 cut(s) 466
PspFI CCCAGC 1 cut(s) 439
PspGI CCWGG 2 cut(s) 121, 433
PspN4I GGNNCC 4 cut(s) 145, 166, 167, 274
PspOMI GGGCCC 1 cut(s) 165
PspPI GGNCC 6 cut(s) 144, 165, 166, 208, 424, 442
PspPPI RGGWCCY 1 cut(s) 144
RsaI GTAC 2 cut(s) 308, 694
RsaNI GTAC 2 cut(s) 307, 693
SacI GAGCTC 1 cut(s) 361
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 5 cut(s) 455, 479, 482, 512, 637
Sau3AI GATC 5 cut(s) 92, 222, 234, 295, 609
Sau96I GGNCC 6 cut(s) 144, 165, 166, 208, 424, 442
ScrFI CCNGG 4 cut(s) 74, 123, 374, 435
SduI GDGCHC 3 cut(s) 79, 169, 361
SfaNI GCATC 3 cut(s) 249, 600, 654
SinI GGWCC 1 cut(s) 144
Sse9I AATT 2 cut(s) 30, 187
SseBI AGGCCT 1 cut(s) 131
SsiI CCGC 5 cut(s) 455, 473, 478, 511, 639
SspMI CTAG 2 cut(s) 339, 844
SstI GAGCTC 1 cut(s) 361
StuI AGGCCT 1 cut(s) 131
StyD4I CCNGG 4 cut(s) 72, 121, 372, 433
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 2 cut(s) 468, 588
TaqI TCGA 4 cut(s) 91, 225, 630, 777
TasI AATT 2 cut(s) 30, 187
TauI GCSGC 3 cut(s) 457, 481, 514
TfiI GAWTC 3 cut(s) 386, 627, 672
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 1 cut(s) 224
TseI GCWGC 2 cut(s) 481, 636
TspDTI ATGAA 2 cut(s) 416, 762
TspGWI ACGGA 1 cut(s) 369
TspRI CASTG 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 144
XceI RCATGY 1 cut(s) 329
XspI CTAG 2 cut(s) 339, 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.