Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000459.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Forward (+)

164707 .. 165421

Gene Structure 715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000459.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atggtctttggctccgggacctcaatctggctgagcggggcccacgagcttcagttcaacaactgcgagagagccaaagaggcccaaatcctttggatcgagaccttgatctgcatcccaacttccgacggtgttcttgaaatgagttcctccggtttgatcagagagaactgggggttgatccagcaagccaagtcgttgctcgggtcggagcagcccgactcggaaacaagaccgctcgagttcatcaaccggaacttctccatttttgacatcggcatcattgccggcgtgcaggaagaggatcacagctcgtacaatgacgacaagaaacatgtttttggttctagcaagaagaagaacggagctccgaacccaaacccgaacttcgcagattccgactgccagatgaaaaaagcgccgaacgagggagtgagtgtggaggtgaggaaggcggcgttgaaagcgaggggctgggccgagacacgccgctcaaccaagtggaggtggagcggcagcggcaggagaagctcaccttgtaagggcgacgttggaagcgagggagtgagtgtggaggtgaggaaggcggcgttgaaagcgagggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

202

Amino Acids

22.25

Weight (kDa)

8.34

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	4 cut(s)	36, 238, 492, 513
AciI	CCGC	7 cut(s)	36, 236, 455, 490, 513, 519, 587
AclWI	GGATC	3 cut(s)	104, 175, 312
AcuI	CTGAAG	1 cut(s)	35
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	4 cut(s)	27, 428, 504, 542
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	4 cut(s)	58, 140, 463, 595
AluBI	AGCT	4 cut(s)	49, 312, 368, 531
AluI	AGCT	4 cut(s)	49, 312, 368, 531
Alw21I	GWGCWC	1 cut(s)	370
Alw26I	GTCTC	2 cut(s)	95, 476
AlwI	GGATC	3 cut(s)	104, 175, 312
Ama87I	CYCGRG	2 cut(s)	203, 239
AoxI	GGCC	3 cut(s)	39, 81, 477
ApaI	GGGCCC	1 cut(s)	43
ApeKI	GCWGC	2 cut(s)	214, 516
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	5 cut(s)	18, 39, 40, 82, 477
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	3 cut(s)	457, 525, 589
AvaI	CYCGRG	2 cut(s)	203, 239
AvaII	GGWCC	1 cut(s)	18
BaeGI	GKGCMC	1 cut(s)	43
BanII	GRGCYC	2 cut(s)	43, 370
BauI	CACGAG	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	370
BbvI	GCAGC	2 cut(s)	226, 528
BclI	TGATCA	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	16
BcoDI	GTCTC	2 cut(s)	95, 476
BfaI	CTAG	1 cut(s)	348
BfoI	RGCGCY	1 cut(s)	422
BglI	GCCNNNNNGGC	1 cut(s)	80
BisI	GCNGC	7 cut(s)	215, 456, 490, 514, 517, 520, 588
BlpI	GCTNAGC	1 cut(s)	32
BlsI	GCNGC	7 cut(s)	216, 457, 491, 515, 518, 521, 589
Bme1390I	CCNGG	1 cut(s)	16
Bme18I	GGWCC	1 cut(s)	18
BmeT110I	CYCGRG	2 cut(s)	203, 239
BmgT120I	GGNCC	5 cut(s)	18, 39, 40, 82, 477
BmiI	GGNNCC	4 cut(s)	13, 19, 40, 41
BmrFI	CCNGG	1 cut(s)	16
BmrI	ACTGGG	1 cut(s)	181
BmsI	GCATC	2 cut(s)	123, 288
BmuI	ACTGGG	1 cut(s)	181
Bpu1102I	GCTNAGC	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	16
BsaBI	GATNNNNATC	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	95
BsaWI	WCCGGW	2 cut(s)	152, 252
BsaXI	ACNNNNNCTCC	4 cut(s)	423, 453, 555, 585
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 428, 504, 542
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	282
Bse8I	GATNNNNATC	1 cut(s)	113
BseGI	GGATG	1 cut(s)	114
BseJI	GATNNNNATC	1 cut(s)	113
BseLI	CCNNNNNNNGG	4 cut(s)	27, 428, 504, 542
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	176
BseSI	GKGCMC	1 cut(s)	43
BseXI	GCAGC	2 cut(s)	226, 528
BseYI	CCCAGC	1 cut(s)	474
BsgI	GTGCAG	1 cut(s)	314
BshFI	GGCC	3 cut(s)	41, 83, 479
BsiHKAI	GWGCWC	1 cut(s)	370
BsiHKCI	CYCGRG	2 cut(s)	203, 239
BsiSI	CCGG	4 cut(s)	15, 153, 253, 288
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	4 cut(s)	27, 428, 504, 542
BsmAI	GTCTC	2 cut(s)	95, 476
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	3 cut(s)	41, 83, 479
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	2 cut(s)	203, 239
Bsp120I	GGGCCC	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	43, 370
Bsp143I	GATC	5 cut(s)	96, 108, 159, 180, 304
Bsp1720I	GCTNAGC	1 cut(s)	32
BspACI	CCGC	7 cut(s)	36, 236, 455, 490, 513, 519, 587
BspANI	GGCC	3 cut(s)	41, 83, 479
BspCNI	CTCAG	1 cut(s)	24
BspLI	GGNNCC	4 cut(s)	13, 19, 40, 41
BspPI	GGATC	3 cut(s)	104, 175, 312
BspTNI	GGTCTC	1 cut(s)	95
BsrBI	CCGCTC	4 cut(s)	36, 238, 492, 513
BsrDI	GCAATG	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	287
BssMI	GATC	5 cut(s)	96, 108, 159, 180, 304
BssSI	CACGAG	1 cut(s)	44
Bst2BI	CACGAG	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	294
BstC8I	GCNNGC	3 cut(s)	189, 289, 293
BstDEI	CTNAG	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	114
BstH2I	RGCGCY	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	5 cut(s)	99, 111, 162, 183, 307
BstMAI	GTCTC	2 cut(s)	95, 476
BstMBI	GATC	5 cut(s)	96, 108, 159, 180, 304
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 464, 519, 528, 596
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	14
BstSLI	GKGCMC	1 cut(s)	43
BstV1I	GCAGC	2 cut(s)	226, 528
BsuRI	GGCC	3 cut(s)	41, 83, 479
BtsCI	GGATG	1 cut(s)	114
Cac8I	GCNNGC	3 cut(s)	189, 289, 293
CfoI	GCGC	1 cut(s)	421
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	5 cut(s)	18, 39, 40, 82, 477
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	1 cut(s)	335
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	5 cut(s)	98, 110, 161, 182, 306
DpnII	GATC	5 cut(s)	96, 108, 159, 180, 304
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Ecl136II	GAGCTC	1 cut(s)	368
Eco24I	GRGCYC	2 cut(s)	43, 370
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	18
Eco53kI	GAGCTC	1 cut(s)	368
Eco57I	CTGAAG	1 cut(s)	35
Eco88I	CYCGRG	2 cut(s)	203, 239
EcoICRI	GAGCTC	1 cut(s)	368
EcoO109I	RGGNCCY	2 cut(s)	18, 39
EcoT38I	GRGCYC	2 cut(s)	43, 370
FaeI	CATG	1 cut(s)	338
FaiI	YATR	1 cut(s)	336
FalI	AAGNNNNNCTT	2 cut(s)	520, 552
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	1 cut(s)	334
FauI	CCCGC	1 cut(s)	29
FbaI	TGATCA	1 cut(s)	159
Fnu4HI	GCNGC	7 cut(s)	215, 456, 490, 514, 517, 520, 588
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	2 cut(s)	43, 370
Fsp4HI	GCNGC	7 cut(s)	215, 456, 490, 514, 517, 520, 588
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	7 cut(s)	215, 456, 490, 514, 517, 520, 588
GsaI	CCCAGC	1 cut(s)	478
HaeII	RGCGCY	1 cut(s)	422
HaeIII	GGCC	3 cut(s)	41, 83, 479
HapII	CCGG	4 cut(s)	15, 153, 253, 288
HhaI	GCGC	1 cut(s)	421
Hin1II	CATG	1 cut(s)	338
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HinfI	GANTC	2 cut(s)	221, 395
HpaII	CCGG	4 cut(s)	15, 153, 253, 288
HphI	GGTGA	3 cut(s)	457, 525, 589
Hpy188I	TCNGA	6 cut(s)	127, 164, 211, 226, 372, 400
Hpy188III	TCNNGA	2 cut(s)	100, 137
Hpy99I	CGWCG	2 cut(s)	131, 551
HpyAV	CCTTC	2 cut(s)	445, 577
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	1 cut(s)	549
HpyCH4V	TGCA	2 cut(s)	114, 295
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 464, 519, 528, 596
HpyF3I	CTNAG	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	549
Hsp92II	CATG	1 cut(s)	338
HspAI	GCGC	1 cut(s)	419
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Ksp22I	TGATCA	1 cut(s)	159
Kzo9I	GATC	5 cut(s)	96, 108, 159, 180, 304
LmnI	GCTCC	5 cut(s)	17, 211, 365, 373, 510
Lsp1109I	GCAGC	2 cut(s)	226, 528
LweI	GCATC	2 cut(s)	123, 288
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	1 cut(s)	549
MalI	GATC	5 cut(s)	98, 110, 161, 182, 306
MbiI	CCGCTC	4 cut(s)	36, 238, 492, 513
MboI	GATC	5 cut(s)	96, 108, 159, 180, 304
MboII	GAAGA	3 cut(s)	311, 367, 370
MhlI	GDGCHC	2 cut(s)	43, 370
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	4 cut(s)	150, 189, 423, 532
MroNI	GCCGGC	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	519
MspI	CCGG	4 cut(s)	15, 153, 253, 288
MspR9I	CCNGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	5 cut(s)	80, 464, 519, 528, 596
NaeI	GCCGGC	1 cut(s)	289
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	5 cut(s)	96, 108, 159, 180, 304
NgoMIV	GCCGGC	1 cut(s)	287
NlaIII	CATG	1 cut(s)	338
NlaIV	GGNNCC	4 cut(s)	13, 19, 40, 41
NmeAIII	GCCGAG	1 cut(s)	505
NspI	RCATGY	1 cut(s)	338
PaeR7I	CTCGAG	1 cut(s)	239
PciI	ACATGT	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	2 cut(s)	396, 555
PdiI	GCCGGC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	395
PfoI	TCCNGGA	1 cut(s)	14
PkrI	GCNGC	7 cut(s)	216, 457, 491, 515, 518, 521, 589
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PpuMI	RGGWCCY	1 cut(s)	18
PscI	ACATGT	1 cut(s)	334
Psp124BI	GAGCTC	1 cut(s)	370
Psp5II	RGGWCCY	1 cut(s)	18
PspFI	CCCAGC	1 cut(s)	474
PspN4I	GGNNCC	4 cut(s)	13, 19, 40, 41
PspOMI	GGGCCC	1 cut(s)	39
PspPI	GGNCC	5 cut(s)	18, 39, 40, 82, 477
PspPPI	RGGWCCY	1 cut(s)	18
PspXI	VCTCGAGB	1 cut(s)	239
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SacI	GAGCTC	1 cut(s)	370
SatI	GCNGC	7 cut(s)	215, 456, 490, 514, 517, 520, 588
Sau3AI	GATC	5 cut(s)	96, 108, 159, 180, 304
Sau96I	GGNCC	5 cut(s)	18, 39, 40, 82, 477
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	2 cut(s)	43, 370
SfaNI	GCATC	2 cut(s)	123, 288
Sfr274I	CTCGAG	1 cut(s)	239
SinI	GGWCC	1 cut(s)	18
SlaI	CTCGAG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
SsiI	CCGC	7 cut(s)	36, 236, 455, 490, 513, 519, 587
SspMI	CTAG	1 cut(s)	348
SstI	GAGCTC	1 cut(s)	370
StyD4I	CCNGG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	1 cut(s)	552
TaqI	TCGA	2 cut(s)	99, 240
TauI	GCSGC	5 cut(s)	458, 492, 516, 522, 590
TfiI	GAWTC	1 cut(s)	395
TseI	GCWGC	2 cut(s)	214, 516
TspDTI	ATGAA	2 cut(s)	235, 425
TspGWI	ACGGA	1 cut(s)	378
VpaK11BI	GGWCC	1 cut(s)	18
XceI	RCATGY	1 cut(s)	338
XhoI	CTCGAG	1 cut(s)	239
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.