Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016511.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 658

Gene Structure 658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016511.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 362 bp

ctgagcggggcccacgagcttcagttcaacaactgcgagagagccaaagaggtccaaatccatgggatcgagaccttgattggcatcccaacttccgacggtgttcttgaaatgggtccctccggtttgataagagagaactgggggttgatccagcaagccaagtcgttggaagaggatcacagctcgtacaatgacgacaagaaacatgtttttggttctagcaagaagaagaacggagctccgaacccaaacccggacttcacagattccgactgccagatgaacagagcgccgaagaaacggggcaggaaacccgggctcggccgagacacgctgctcaaccacgtggaggcggaacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

121

Amino Acids

13.4

Weight (kDa)

6.57

Isoelectric Point (pI)

21.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	6
AciI	CCGC	2 cut(s)	6, 356
AclWI	GGATC	3 cut(s)	74, 145, 186
AcoI	YGGCCR	1 cut(s)	325
AcuI	CTGAAG	1 cut(s)	5
AcvI	CACGTG	1 cut(s)	349
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	3 cut(s)	256, 323, 352
AflIII	ACRYGT	1 cut(s)	208
AgsI	TTSAA	2 cut(s)	28, 110
AluBI	AGCT	3 cut(s)	19, 186, 242
AluI	AGCT	3 cut(s)	19, 186, 242
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	2 cut(s)	65, 324
AlwI	GGATC	3 cut(s)	74, 145, 186
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	2 cut(s)	9, 325
ApaI	GGGCCC	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	337
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	4 cut(s)	9, 10, 52, 116
AsuC2I	CCSGG	3 cut(s)	257, 318, 319
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	2 cut(s)	52, 116
BaeGI	GKGCMC	1 cut(s)	13
BanII	GRGCYC	3 cut(s)	13, 244, 324
BauI	CACGAG	1 cut(s)	14
BbrPI	CACGTG	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	324
BcnI	CCSGG	3 cut(s)	257, 318, 319
BcoDI	GTCTC	2 cut(s)	65, 324
BfaI	CTAG	1 cut(s)	222
BfoI	RGCGCY	1 cut(s)	296
BisI	GCNGC	1 cut(s)	338
BlsI	GCNGC	1 cut(s)	339
Bme1390I	CCNGG	3 cut(s)	257, 318, 319
Bme18I	GGWCC	2 cut(s)	52, 116
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	4 cut(s)	9, 10, 52, 116
BmiI	GGNNCC	4 cut(s)	10, 11, 117, 118
BmrFI	CCNGG	3 cut(s)	257, 318, 319
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	1 cut(s)	93
BmuI	ACTGGG	1 cut(s)	151
BpuMI	CCSGG	3 cut(s)	257, 318, 319
BsaAI	YACGTR	1 cut(s)	349
BsaBI	GATNNNNATC	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	2 cut(s)	61, 317
BsaWI	WCCGGW	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 323, 352
Bse1I	ACTGG	1 cut(s)	146
Bse8I	GATNNNNATC	1 cut(s)	83
BseDI	CCNNGG	2 cut(s)	61, 317
BseGI	GGATG	1 cut(s)	84
BseJI	GATNNNNATC	1 cut(s)	83
BseLI	CCNNNNNNNGG	3 cut(s)	256, 323, 352
BseNI	ACTGG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	13
BseX3I	CGGCCG	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	324
Bsh1285I	CGRYCG	1 cut(s)	328
BshFI	GGCC	2 cut(s)	11, 327
BsiEI	CGRYCG	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	244
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	3 cut(s)	123, 257, 318
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	3 cut(s)	256, 323, 352
BsmAI	GTCTC	2 cut(s)	65, 324
BsmFI	GGGAC	1 cut(s)	102
BsnI	GGCC	2 cut(s)	11, 327
Bso31I	GGTCTC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	317
Bsp120I	GGGCCC	1 cut(s)	9
Bsp1286I	GDGCHC	3 cut(s)	13, 244, 324
Bsp143I	GATC	3 cut(s)	66, 150, 178
Bsp19I	CCATGG	1 cut(s)	61
BspACI	CCGC	2 cut(s)	6, 356
BspANI	GGCC	2 cut(s)	11, 327
BspLI	GGNNCC	4 cut(s)	10, 11, 117, 118
BspPI	GGATC	3 cut(s)	74, 145, 186
BspTNI	GGTCTC	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	2 cut(s)	61, 317
BssMI	GATC	3 cut(s)	66, 150, 178
BssSI	CACGAG	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	61
Bst2BI	CACGAG	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	101
Bst6I	CTCTTC	1 cut(s)	168
BstBAI	YACGTR	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	2
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	84
BstH2I	RGCGCY	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	3 cut(s)	69, 153, 181
BstMAI	GTCTC	2 cut(s)	65, 324
BstMBI	GATC	3 cut(s)	66, 150, 178
BstMCI	CGRYCG	1 cut(s)	328
BstNSI	RCATGY	1 cut(s)	212
BstSCI	CCNGG	3 cut(s)	255, 316, 317
BstSLI	GKGCMC	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	324
BstXI	CCANNNNNNTGG	2 cut(s)	62, 169
BstZI	CGGCCG	1 cut(s)	325
BsuRI	GGCC	2 cut(s)	11, 327
BtgI	CCRYGG	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	159
CfoI	GCGC	1 cut(s)	295
Cfr13I	GGNCC	4 cut(s)	9, 10, 52, 116
Cfr9I	CCCGGG	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	2 cut(s)	62, 209
CviJI	RGCY	8 cut(s)	11, 19, 44, 161, 186, 242, 322, 327
CviKI_1	RGCY	8 cut(s)	11, 19, 44, 161, 186, 242, 322, 327
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	1 cut(s)	2
DpnI	GATC	3 cut(s)	68, 152, 180
DpnII	GATC	3 cut(s)	66, 150, 178
EaeI	YGGCCR	1 cut(s)	325
EagI	CGGCCG	1 cut(s)	325
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	242
EclXI	CGGCCG	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	61
Eco24I	GRGCYC	3 cut(s)	13, 244, 324
Eco31I	GGTCTC	1 cut(s)	65
Eco47I	GGWCC	2 cut(s)	52, 116
Eco52I	CGGCCG	1 cut(s)	325
Eco53kI	GAGCTC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	5
Eco72I	CACGTG	1 cut(s)	349
Eco88I	CYCGRG	1 cut(s)	317
EcoICRI	GAGCTC	1 cut(s)	242
EcoO109I	RGGNCCY	2 cut(s)	9, 116
EcoT14I	CCWWGG	1 cut(s)	61
EcoT38I	GRGCYC	3 cut(s)	13, 244, 324
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	2 cut(s)	65, 212
FaiI	YATR	2 cut(s)	63, 210
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	2 cut(s)	61, 208
Fnu4HI	GCNGC	1 cut(s)	338
FokI	GGATG	1 cut(s)	71
FriOI	GRGCYC	3 cut(s)	13, 244, 324
Fsp4HI	GCNGC	1 cut(s)	338
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	1 cut(s)	338
HaeII	RGCGCY	1 cut(s)	296
HaeIII	GGCC	2 cut(s)	11, 327
HapII	CCGG	3 cut(s)	123, 257, 318
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	2 cut(s)	65, 212
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HinfI	GANTC	1 cut(s)	269
HpaII	CCGG	3 cut(s)	123, 257, 318
Hpy188I	TCNGA	3 cut(s)	97, 246, 274
Hpy188III	TCNNGA	2 cut(s)	70, 107
Hpy99I	CGWCG	1 cut(s)	101
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	348
HpyF3I	CTNAG	1 cut(s)	2
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	2 cut(s)	65, 212
HspAI	GCGC	1 cut(s)	293
KflI	GGGWCCC	1 cut(s)	116
Kzo9I	GATC	3 cut(s)	66, 150, 178
LmnI	GCTCC	2 cut(s)	239, 247
LpnPI	CCDG	7 cut(s)	127, 136, 167, 270, 293, 295, 331
Lsp1109I	GCAGC	1 cut(s)	324
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	1 cut(s)	348
MalI	GATC	3 cut(s)	68, 152, 180
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	3 cut(s)	66, 150, 178
MboII	GAAGA	4 cut(s)	185, 241, 244, 310
MhlI	GDGCHC	3 cut(s)	13, 244, 324
MmeI	TCCRAC	3 cut(s)	120, 150, 297
MnlI	CCTC	4 cut(s)	43, 130, 169, 346
MspI	CCGG	3 cut(s)	123, 257, 318
MspR9I	CCNGG	3 cut(s)	257, 318, 319
NciI	CCSGG	3 cut(s)	257, 318, 319
NcoI	CCATGG	1 cut(s)	61
NdeII	GATC	3 cut(s)	66, 150, 178
NlaIII	CATG	2 cut(s)	65, 212
NlaIV	GGNNCC	4 cut(s)	10, 11, 117, 118
NmeAIII	GCCGAG	2 cut(s)	303, 353
NspI	RCATGY	1 cut(s)	212
PciI	ACATGT	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	1 cut(s)	339
PmaCI	CACGTG	1 cut(s)	349
PmlI	CACGTG	1 cut(s)	349
Ppu21I	YACGTR	1 cut(s)	349
PpuMI	RGGWCCY	1 cut(s)	116
PscI	ACATGT	1 cut(s)	208
Psp124BI	GAGCTC	1 cut(s)	244
Psp5II	RGGWCCY	1 cut(s)	116
PspCI	CACGTG	1 cut(s)	349
PspN4I	GGNNCC	4 cut(s)	10, 11, 117, 118
PspOMI	GGGCCC	1 cut(s)	9
PspPI	GGNCC	4 cut(s)	9, 10, 52, 116
PspPPI	RGGWCCY	1 cut(s)	116
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SacI	GAGCTC	1 cut(s)	244
SatI	GCNGC	1 cut(s)	338
Sau3AI	GATC	3 cut(s)	66, 150, 178
Sau96I	GGNCC	4 cut(s)	9, 10, 52, 116
ScrFI	CCNGG	3 cut(s)	257, 318, 319
SduI	GDGCHC	3 cut(s)	13, 244, 324
SetI	ASST	6 cut(s)	21, 54, 77, 188, 244, 351
SfaNI	GCATC	1 cut(s)	93
SinI	GGWCC	2 cut(s)	52, 116
SmaI	CCCGGG	1 cut(s)	319
SsiI	CCGC	2 cut(s)	6, 356
SspMI	CTAG	1 cut(s)	222
SstI	GAGCTC	1 cut(s)	244
StyD4I	CCNGG	3 cut(s)	255, 316, 317
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	1 cut(s)	101
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	269
TseI	GCWGC	1 cut(s)	337
TspDTI	ATGAA	1 cut(s)	299
TspGWI	ACGGA	1 cut(s)	252
TspMI	CCCGGG	1 cut(s)	317
VpaK11BI	GGWCC	2 cut(s)	52, 116
XceI	RCATGY	1 cut(s)	212
XmaI	CCCGGG	1 cut(s)	317
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.