Rh1DG288700
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000212
Physical Location & Seq
Forward (+)
51173446 .. 51174057
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG288700.1

Sequence Viewer

Length: 612 bp
ATGAAAAGAGCGCCGAAGAAACGGGGCCGGAAACCCGGGCTGGGCCGAGACACGCCGCTGAACCACGTGGAGGCGGAGCGGCAGCGGCGGGAGAAGCTCAACCACCGGTTCTACGCGCTACGTGCGGTGGTGCCCAACGTGTCGAGAATGGACAAGGCGTCGCTGCTGTCCGACGCCGTGTCGTACATCAACGACCTGAAGGCCAAGGTGGACGAGCTGGAGTCGAAGCTGCAGAGGGAGTCAAAGAAAGTCAAAGTGGAAATGGCGGACAACCAGGACAACCAGAGCACCACCACCACCGCCTCCGTGGAGCAAACACAAACAGTGAGGCCTGATATCAACAACACCAACAACGGGTCGGCTCTCGAGATTGAGGTGAAGATAGTGGGCACGGACGCCATGATTAGGGTGCAGTCGGAGAATGTGAACTACCCATCTGCGAGGTTAATGACGGCGATGCGTGACTTAGAGTTCCGCATCCACCATGCGAGCTTGTCAAGCATCAATGATCTTATGCTCCAAGATATTGTGGTGAAGGTTCCTGATAATATGAGAAGCGAAGAAGGTCTCAAAGCTGCTCTACTCGGAATATTAGATCAGAACCAAGCTTAA

Protein Analysis

203

Amino Acids

22.85

Weight (kDa)

9.3

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 21 - 67 2.4e-12 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 130
AccBSI CCGCTC 1 cut(s) 79
AccII CGCG 1 cut(s) 116
AciI CCGC 9 cut(s) 56, 74, 79, 85, 88, 125, 266, 300, 475
AcuI CTGAAG 1 cut(s) 218
AcvI CACGTG 1 cut(s) 67
AcyI GRCGYC 3 cut(s) 158, 174, 396
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 4 cut(s) 41, 70, 354, 405
AflIII ACRYGT 1 cut(s) 138
AgeI ACCGGT 1 cut(s) 105
AhdI GACNNNNNGTC 2 cut(s) 157, 178
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 6 cut(s) 97, 217, 229, 492, 575, 608
AluI AGCT 6 cut(s) 97, 217, 229, 492, 575, 608
Alw21I GWGCWC 1 cut(s) 290
Alw26I GTCTC 2 cut(s) 42, 572
Ama87I CYCGRG 2 cut(s) 35, 365
AoxI GGCC 4 cut(s) 25, 43, 201, 329
ApeKI GCWGC 4 cut(s) 82, 163, 229, 575
AsiGI ACCGGT 1 cut(s) 105
AspLEI GCGC 2 cut(s) 13, 118
AspS9I GGNCC 2 cut(s) 25, 43
AsuC2I CCSGG 2 cut(s) 36, 37
AsuHPI GGTGA 2 cut(s) 388, 544
AvaI CYCGRG 2 cut(s) 35, 365
BaeGI GKGCMC 2 cut(s) 135, 392
BanI GGYRCC 1 cut(s) 130
BbrPI CACGTG 1 cut(s) 67
Bbv12I GWGCWC 1 cut(s) 290
BbvI GCAGC 4 cut(s) 94, 150, 216, 562
BccI CCATC 1 cut(s) 442
BceAI ACGGC 2 cut(s) 161, 468
BciT130I CCWGG 1 cut(s) 275
BcnI CCSGG 2 cut(s) 36, 37
BcoDI GTCTC 2 cut(s) 42, 572
BfmI CTRYAG 1 cut(s) 230
BfoI RGCGCY 1 cut(s) 14
BisI GCNGC 7 cut(s) 56, 80, 83, 86, 164, 230, 576
BlsI GCNGC 7 cut(s) 57, 81, 84, 87, 165, 231, 577
Bme1390I CCNGG 3 cut(s) 36, 37, 275
BmeRI GACNNNNNGTC 2 cut(s) 157, 178
BmeT110I CYCGRG 2 cut(s) 35, 365
BmgT120I GGNCC 2 cut(s) 25, 43
BmiI GGNNCC 3 cut(s) 26, 132, 540
BmrFI CCNGG 3 cut(s) 36, 37, 275
BmsI GCATC 3 cut(s) 447, 486, 510
BpmI CTGGAG 1 cut(s) 239
BpuMI CCSGG 2 cut(s) 36, 37
BsaAI YACGTR 2 cut(s) 67, 122
BsaHI GRCGYC 3 cut(s) 158, 174, 396
BsaI GGTCTC 1 cut(s) 572
BsaJI CCNNGG 3 cut(s) 35, 204, 306
BsaWI WCCGGW 1 cut(s) 105
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 70, 354, 405
Bse118I RCCGGY 1 cut(s) 105
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 3 cut(s) 35, 204, 306
BseGI GGATG 1 cut(s) 477
BseLI CCNNNNNNNGG 4 cut(s) 41, 70, 354, 405
BseSI GKGCMC 2 cut(s) 135, 392
BseXI GCAGC 4 cut(s) 94, 150, 216, 562
BseYI CCCAGC 1 cut(s) 40
BsgI GTGCAG 1 cut(s) 431
Bsh1236I CGCG 1 cut(s) 116
BshFI GGCC 4 cut(s) 27, 45, 203, 331
BshNI GGYRCC 1 cut(s) 130
BshTI ACCGGT 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 290
BsiHKCI CYCGRG 2 cut(s) 35, 365
BsiSI CCGG 3 cut(s) 28, 36, 106
BslI CCNNNNNNNGG 4 cut(s) 41, 70, 354, 405
BsmAI GTCTC 2 cut(s) 42, 572
BsnI GGCC 4 cut(s) 27, 45, 203, 331
Bso31I GGTCTC 1 cut(s) 572
BsoBI CYCGRG 2 cut(s) 35, 365
Bsp1286I GDGCHC 3 cut(s) 135, 290, 392
Bsp143I GATC 2 cut(s) 508, 595
BspACI CCGC 9 cut(s) 56, 74, 79, 85, 88, 125, 266, 300, 475
BspANI GGCC 4 cut(s) 27, 45, 203, 331
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 3 cut(s) 26, 132, 540
BspMAI CTGCAG 1 cut(s) 234
BspT107I GGYRCC 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 572
BsrBI CCGCTC 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 105
BssAI RCCGGY 1 cut(s) 105
BssECI CCNNGG 3 cut(s) 35, 204, 306
BssMI GATC 2 cut(s) 508, 595
BssNI GRCGYC 3 cut(s) 158, 174, 396
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 1 cut(s) 325
BstACI GRCGYC 3 cut(s) 158, 174, 396
BstBAI YACGTR 2 cut(s) 67, 122
BstC8I GCNNGC 1 cut(s) 490
BstDEI CTNAG 1 cut(s) 466
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 1 cut(s) 477
BstFNI CGCG 1 cut(s) 116
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 2 cut(s) 13, 118
BstKTI GATC 2 cut(s) 511, 598
BstMAI GTCTC 2 cut(s) 42, 572
BstMBI GATC 2 cut(s) 508, 595
BstMWI GCNNNNNNNGC 4 cut(s) 85, 94, 122, 498
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 3 cut(s) 34, 35, 273
BstSFI CTRYAG 1 cut(s) 230
BstSLI GKGCMC 2 cut(s) 135, 392
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 4 cut(s) 94, 150, 216, 562
BsuRI GGCC 4 cut(s) 27, 45, 203, 331
BtgI CCRYGG 1 cut(s) 306
BtgZI GCGATG 1 cut(s) 470
BtsCI GGATG 1 cut(s) 477
BtsIMutI CAGTG 1 cut(s) 330
Cac8I GCNNGC 1 cut(s) 490
CfoI GCGC 2 cut(s) 13, 118
Cfr10I RCCGGY 1 cut(s) 105
Cfr13I GGNCC 2 cut(s) 25, 43
Cfr9I CCCGGG 1 cut(s) 35
CseI GACGC 3 cut(s) 147, 182, 404
Csp6I GTAC 1 cut(s) 184
CspAI ACCGGT 1 cut(s) 105
CviAII CATG 2 cut(s) 400, 485
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 466
DpnI GATC 2 cut(s) 510, 597
DpnII GATC 2 cut(s) 508, 595
DriI GACNNNNNGTC 2 cut(s) 157, 178
Eam1105I GACNNNNNGTC 2 cut(s) 157, 178
EciI GGCGGA 2 cut(s) 89, 281
Eco130I CCWWGG 1 cut(s) 204
Eco147I AGGCCT 1 cut(s) 331
Eco31I GGTCTC 1 cut(s) 572
Eco32I GATATC 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 218
Eco72I CACGTG 1 cut(s) 67
Eco88I CYCGRG 2 cut(s) 35, 365
EcoRII CCWGG 1 cut(s) 273
EcoRV GATATC 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 2 cut(s) 403, 488
FaiI YATR 4 cut(s) 401, 486, 515, 551
FatI CATG 2 cut(s) 399, 484
FauI CCCGC 1 cut(s) 81
Fnu4HI GCNGC 7 cut(s) 56, 80, 83, 86, 164, 230, 576
FokI GGATG 1 cut(s) 464
Fsp4HI GCNGC 7 cut(s) 56, 80, 83, 86, 164, 230, 576
GlaI GCGC 2 cut(s) 12, 117
GluI GCNGC 7 cut(s) 56, 80, 83, 86, 164, 230, 576
GsaI CCCAGC 1 cut(s) 44
GsuI CTGGAG 1 cut(s) 239
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 4 cut(s) 27, 45, 203, 331
HapII CCGG 3 cut(s) 28, 36, 106
HgaI GACGC 3 cut(s) 147, 182, 404
HhaI GCGC 2 cut(s) 13, 118
Hin1I GRCGYC 3 cut(s) 158, 174, 396
Hin1II CATG 2 cut(s) 403, 488
Hin6I GCGC 2 cut(s) 11, 116
HinP1I GCGC 2 cut(s) 11, 116
HindIII AAGCTT 1 cut(s) 606
HinfI GANTC 2 cut(s) 221, 239
HpaII CCGG 3 cut(s) 28, 36, 106
HphI GGTGA 2 cut(s) 388, 544
Hpy166II GTNNAC 2 cut(s) 211, 427
Hpy188I TCNGA 4 cut(s) 172, 418, 587, 600
Hpy188III TCNNGA 4 cut(s) 144, 365, 367, 542
Hpy8I GTNNAC 2 cut(s) 211, 427
Hpy99I CGWCG 2 cut(s) 163, 176
HpyAV CCTTC 3 cut(s) 193, 529, 557
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4IV ACGT 3 cut(s) 66, 121, 138
HpyCH4V TGCA 2 cut(s) 232, 412
HpyF10VI GCNNNNNNNGC 4 cut(s) 85, 94, 122, 498
HpyF3I CTNAG 1 cut(s) 466
HpySE526I ACGT 3 cut(s) 66, 121, 138
Hsp92I GRCGYC 3 cut(s) 158, 174, 396
Hsp92II CATG 2 cut(s) 403, 488
HspAI GCGC 2 cut(s) 11, 116
Kzo9I GATC 2 cut(s) 508, 595
LmnI GCTCC 3 cut(s) 76, 310, 522
Lsp1109I GCAGC 4 cut(s) 94, 150, 216, 562
LweI GCATC 3 cut(s) 447, 486, 510
MaeII ACGT 3 cut(s) 66, 121, 138
MaeIII GTNAC 1 cut(s) 461
MalI GATC 2 cut(s) 510, 597
MbiI CCGCTC 1 cut(s) 79
MboI GATC 2 cut(s) 508, 595
MboII GAAGA 3 cut(s) 28, 391, 572
MhlI GDGCHC 3 cut(s) 135, 290, 392
MlyI GAGTC 2 cut(s) 230, 248
MmeI TCCRAC 2 cut(s) 195, 396
MnlI CCTC 6 cut(s) 64, 228, 313, 321, 367, 435
MseI TTAA 2 cut(s) 446, 610
MspA1I CMGCKG 2 cut(s) 58, 85
MspI CCGG 3 cut(s) 28, 36, 106
MspR9I CCNGG 3 cut(s) 36, 37, 275
MvaI CCWGG 1 cut(s) 275
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 4 cut(s) 85, 94, 122, 498
NciI CCSGG 2 cut(s) 36, 37
NdeII GATC 2 cut(s) 508, 595
NlaIII CATG 2 cut(s) 403, 488
NlaIV GGNNCC 3 cut(s) 26, 132, 540
NmeAIII GCCGAG 1 cut(s) 71
NmuCI GTSAC 1 cut(s) 461
PaeR7I CTCGAG 1 cut(s) 365
PceI AGGCCT 1 cut(s) 331
PinAI ACCGGT 1 cut(s) 105
PkrI GCNGC 7 cut(s) 57, 81, 84, 87, 165, 231, 577
PleI GAGTC 2 cut(s) 229, 247
PmaCI CACGTG 1 cut(s) 67
PmlI CACGTG 1 cut(s) 67
PpsI GAGTC 2 cut(s) 229, 247
Ppu21I YACGTR 2 cut(s) 67, 122
Psp6I CCWGG 1 cut(s) 273
PspCI CACGTG 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 3 cut(s) 26, 132, 540
PspPI GGNCC 2 cut(s) 25, 43
PstI CTGCAG 1 cut(s) 234
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SaqAI TTAA 2 cut(s) 446, 610
SatI GCNGC 7 cut(s) 56, 80, 83, 86, 164, 230, 576
Sau3AI GATC 2 cut(s) 508, 595
Sau96I GGNCC 2 cut(s) 25, 43
SchI GAGTC 2 cut(s) 230, 248
ScrFI CCNGG 3 cut(s) 36, 37, 275
SduI GDGCHC 3 cut(s) 135, 290, 392
SfaNI GCATC 3 cut(s) 447, 486, 510
SfcI CTRYAG 1 cut(s) 230
Sfr274I CTCGAG 1 cut(s) 365
SlaI CTCGAG 1 cut(s) 365
SmaI CCCGGG 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
SseBI AGGCCT 1 cut(s) 331
SsiI CCGC 9 cut(s) 56, 74, 79, 85, 88, 125, 266, 300, 475
SspI AATATT 1 cut(s) 591
StuI AGGCCT 1 cut(s) 331
StyD4I CCNGG 3 cut(s) 34, 35, 273
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 325
TaiI ACGT 3 cut(s) 69, 124, 141
TaqI TCGA 3 cut(s) 143, 224, 366
TauI GCSGC 3 cut(s) 58, 82, 88
Tru1I TTAA 2 cut(s) 446, 610
Tru9I TTAA 2 cut(s) 446, 610
TscAI CASTG 1 cut(s) 330
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 4 cut(s) 82, 163, 229, 575
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 295, 407
TspMI CCCGGG 1 cut(s) 35
TspRI CASTG 1 cut(s) 330
XcmI CCANNNNNNNNNTGG 1 cut(s) 304
XhoI CTCGAG 1 cut(s) 365
XmaI CCCGGG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.