Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000959.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Reverse (-)

77714 .. 78633

Gene Structure 920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000959.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgtatttaagtttcactggtcctttattcaaagttacagctggaagaatgcaagaatttctcctcaaaatcgttcccagaaagctgattctaaaactgcagttttcagctttgcagcaactgttttgcacaactttttccatggactttccttgcaaggcattcggctccgggacctcaatctggctaagcggggcccacgagcttcagttcaacaaccgcgagagagccaaagaggcccaaatccatgggatcgagaccttgatctgcatcccaacttccgacggtgttcttgaaatgggttcctccggtttgatcagagagaactgggggttgatccagcaagccaagtcgttgttcgggttggatcagcccgacccagaaacaagaccgctcgagttcatcaaccgaaacttctccatttttgacatcggcatcattgccggcatgcaggaagaggatcacttacagctcatacaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

160

Amino Acids

18.07

Weight (kDa)

5.59

Isoelectric Point (pI)

29.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	394
AccII	CGCG	1 cut(s)	222
AciI	CCGC	3 cut(s)	192, 220, 392
AclWI	GGATC	4 cut(s)	260, 331, 375, 468
AcsI	RAATTY	1 cut(s)	56
AcuI	CTGAAG	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgsI	TTSAA	3 cut(s)	31, 214, 296
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AluBI	AGCT	5 cut(s)	41, 85, 110, 205, 472
AluI	AGCT	5 cut(s)	41, 85, 110, 205, 472
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	4 cut(s)	260, 331, 375, 468
AlwNI	CAGNNNCTG	1 cut(s)	121
Ama87I	CYCGRG	1 cut(s)	395
AoxI	GGCC	2 cut(s)	195, 237
ApaI	GGGCCC	1 cut(s)	199
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	1 cut(s)	56
AspS9I	GGNCC	5 cut(s)	20, 174, 195, 196, 238
AsuC2I	CCSGG	1 cut(s)	172
AvaI	CYCGRG	1 cut(s)	395
AvaII	GGWCC	2 cut(s)	20, 174
BaeGI	GKGCMC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	199
BauI	CACGAG	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	127
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BclI	TGATCA	1 cut(s)	315
BcnI	CCSGG	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	98
BglI	GCCNNNNNGGC	1 cut(s)	236
BisI	GCNGC	1 cut(s)	116
BlpI	GCTNAGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	117
Bme1390I	CCNGG	1 cut(s)	172
Bme18I	GGWCC	2 cut(s)	20, 174
BmeT110I	CYCGRG	1 cut(s)	395
BmgT120I	GGNCC	5 cut(s)	20, 174, 195, 196, 238
BmiI	GGNNCC	5 cut(s)	169, 175, 196, 197, 304
BmrFI	CCNGG	1 cut(s)	172
BmrI	ACTGGG	1 cut(s)	337
BmsI	GCATC	2 cut(s)	279, 444
BmuI	ACTGGG	1 cut(s)	337
Bpu1102I	GCTNAGC	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	172
BsaBI	GATNNNNATC	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	141, 247
BsaWI	WCCGGW	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	2 cut(s)	22, 332
Bse3DI	GCAATG	1 cut(s)	438
Bse8I	GATNNNNATC	1 cut(s)	269
BseDI	CCNNGG	2 cut(s)	141, 247
BseGI	GGATG	1 cut(s)	270
BseJI	GATNNNNATC	1 cut(s)	269
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMI	GCAATG	1 cut(s)	438
BseNI	ACTGG	2 cut(s)	22, 332
BseRI	GAGGAG	1 cut(s)	53
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	127
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	197, 239
BsiHKCI	CYCGRG	1 cut(s)	395
BsiSI	CCGG	3 cut(s)	171, 309, 444
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	187
BsmI	GAATGC	2 cut(s)	54, 161
BsnI	GGCC	2 cut(s)	197, 239
Bso31I	GGTCTC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	395
Bsp120I	GGGCCC	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	6 cut(s)	252, 264, 315, 336, 367, 460
Bsp1720I	GCTNAGC	1 cut(s)	188
Bsp19I	CCATGG	2 cut(s)	141, 247
BspACI	CCGC	3 cut(s)	192, 220, 392
BspANI	GGCC	2 cut(s)	197, 239
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	5 cut(s)	169, 175, 196, 197, 304
BspMAI	CTGCAG	1 cut(s)	102
BspPI	GGATC	4 cut(s)	260, 331, 375, 468
BspTNI	GGTCTC	1 cut(s)	251
BsrBI	CCGCTC	1 cut(s)	394
BsrDI	GCAATG	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	2 cut(s)	22, 332
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	2 cut(s)	141, 247
BssMI	GATC	6 cut(s)	252, 264, 315, 336, 367, 460
BssSI	CACGAG	1 cut(s)	200
BssT1I	CCWWGG	2 cut(s)	141, 247
Bst2BI	CACGAG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	123, 287
Bst6I	CTCTTC	1 cut(s)	450
BstC8I	GCNNGC	3 cut(s)	345, 445, 449
BstDEI	CTNAG	1 cut(s)	188
BstDSI	CCRYGG	2 cut(s)	141, 247
BstF5I	GGATG	1 cut(s)	270
BstFNI	CGCG	1 cut(s)	222
BstKTI	GATC	6 cut(s)	255, 267, 318, 339, 370, 463
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	6 cut(s)	252, 264, 315, 336, 367, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	98
BstSLI	GKGCMC	1 cut(s)	199
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	127
BstXI	CCANNNNNNTGG	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	197, 239
BtgI	CCRYGG	2 cut(s)	141, 247
BtsCI	GGATG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	3 cut(s)	345, 445, 449
CaiI	CAGNNNCTG	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	5 cut(s)	20, 174, 195, 196, 238
CviAII	CATG	3 cut(s)	142, 248, 448
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	6 cut(s)	254, 266, 317, 338, 369, 462
DpnII	GATC	6 cut(s)	252, 264, 315, 336, 367, 460
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
Eco130I	CCWWGG	2 cut(s)	141, 247
Eco24I	GRGCYC	1 cut(s)	199
Eco31I	GGTCTC	1 cut(s)	251
Eco47I	GGWCC	2 cut(s)	20, 174
Eco57I	CTGAAG	1 cut(s)	191
Eco88I	CYCGRG	1 cut(s)	395
EcoO109I	RGGNCCY	2 cut(s)	174, 195
EcoT14I	CCWWGG	2 cut(s)	141, 247
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	2 cut(s)	141, 247
FaeI	CATG	3 cut(s)	145, 251, 451
FaiI	YATR	4 cut(s)	143, 249, 449, 476
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	3 cut(s)	141, 247, 447
FauI	CCCGC	1 cut(s)	185
FbaI	TGATCA	1 cut(s)	315
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	1 cut(s)	116
GluI	GCNGC	1 cut(s)	116
HaeIII	GGCC	2 cut(s)	197, 239
HapII	CCGG	3 cut(s)	171, 309, 444
Hin1II	CATG	3 cut(s)	145, 251, 451
HinfI	GANTC	1 cut(s)	88
HpaII	CCGG	3 cut(s)	171, 309, 444
Hpy188I	TCNGA	2 cut(s)	283, 320
Hpy188III	TCNNGA	2 cut(s)	256, 293
Hpy99I	CGWCG	1 cut(s)	287
HpyCH4III	ACNGT	2 cut(s)	123, 287
HpyCH4V	TGCA	7 cut(s)	52, 100, 115, 129, 156, 270, 451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	1 cut(s)	188
Hsp92II	CATG	3 cut(s)	145, 251, 451
KroI	GCCGGC	1 cut(s)	443
KroNI	GCCGGC	1 cut(s)	445
Ksp22I	TGATCA	1 cut(s)	315
Kzo9I	GATC	6 cut(s)	252, 264, 315, 336, 367, 460
LmnI	GCTCC	1 cut(s)	173
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	2 cut(s)	279, 444
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	6 cut(s)	254, 266, 317, 338, 369, 462
MbiI	CCGCTC	1 cut(s)	394
MboI	GATC	6 cut(s)	252, 264, 315, 336, 367, 460
MboII	GAAGA	2 cut(s)	57, 467
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	1 cut(s)	56
MmeI	TCCRAC	2 cut(s)	306, 345
MnlI	CCTC	5 cut(s)	74, 187, 229, 316, 451
MroNI	GCCGGC	1 cut(s)	443
MseI	TTAA	1 cut(s)	8
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	3 cut(s)	171, 309, 444
MspR9I	CCNGG	1 cut(s)	172
Mva1269I	GAATGC	2 cut(s)	54, 161
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	236
NaeI	GCCGGC	1 cut(s)	445
NciI	CCSGG	1 cut(s)	172
NcoI	CCATGG	2 cut(s)	141, 247
NdeII	GATC	6 cut(s)	252, 264, 315, 336, 367, 460
NgoMIV	GCCGGC	1 cut(s)	443
NlaIII	CATG	3 cut(s)	145, 251, 451
NlaIV	GGNNCC	5 cut(s)	169, 175, 196, 197, 304
NspI	RCATGY	1 cut(s)	451
PaeI	GCATGC	1 cut(s)	451
PaeR7I	CTCGAG	1 cut(s)	395
PctI	GAATGC	2 cut(s)	54, 161
PdiI	GCCGGC	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	117
PpuMI	RGGWCCY	1 cut(s)	174
Psp5II	RGGWCCY	1 cut(s)	174
PspN4I	GGNNCC	5 cut(s)	169, 175, 196, 197, 304
PspOMI	GGGCCC	1 cut(s)	195
PspPI	GGNCC	5 cut(s)	20, 174, 195, 196, 238
PspPPI	RGGWCCY	1 cut(s)	174
PspXI	VCTCGAGB	1 cut(s)	395
PstI	CTGCAG	1 cut(s)	102
PstNI	CAGNNNCTG	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	6 cut(s)	252, 264, 315, 336, 367, 460
Sau96I	GGNCC	5 cut(s)	20, 174, 195, 196, 238
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	7 cut(s)	43, 87, 112, 179, 207, 263, 474
SfaNI	GCATC	2 cut(s)	279, 444
SfcI	CTRYAG	1 cut(s)	98
Sfr274I	CTCGAG	1 cut(s)	395
SinI	GGWCC	2 cut(s)	20, 174
SlaI	CTCGAG	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
SphI	GCATGC	1 cut(s)	451
Sse9I	AATT	1 cut(s)	56
SsiI	CCGC	3 cut(s)	192, 220, 392
StyD4I	CCNGG	1 cut(s)	170
StyI	CCWWGG	2 cut(s)	141, 247
TaaI	ACNGT	2 cut(s)	123, 287
TaqI	TCGA	2 cut(s)	255, 396
TasI	AATT	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	1 cut(s)	22
TseI	GCWGC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	391
TspRI	CASTG	1 cut(s)	22
VpaK11BI	GGWCC	2 cut(s)	20, 174
XapI	RAATTY	1 cut(s)	56
XceI	RCATGY	1 cut(s)	451
XhoI	CTCGAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.