RLG00000004796
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000212
Physical Location & Seq
Reverse (-)
62389778 .. 62392513
2736 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004796

Sequence Viewer

Length: 1167 bp
ATGGGTGAGATGATTTCCTCATGTTCTTCACCCTACAATGTTTATCCAGAAACTACCTCAGCCACATTGCTTCAACAACGCCTCCAATTCATACTTCAGACCCGCCCTGAAACCTGGGTTTACTCCATTTTCTGGAAAGCCTCCAAAGACGGTAACGACGACAACGGCGTTTCTTTGTCATGGGCCGGAGGCCATTTCAGAGGCATTAGAGACTTCTCATCCAAAAAATCAGGCATTCAGAACTCGGATAATAACTACCGACCCAGATTTGGGATGGTCAACACAGAGATCGAAGCGCCGTGTCATGACGACATGGACTCGGAGAGATTTGAAGACATTAACGGAGACGTGACTGACTCCGAGTGGTTCTACTTCTACACCGTCTCTCTAACACAGTCGTTTGCTTCAGGCCACAATGGGAATTCCAACATTCTGGGCCCTGTGCATTCTTCTAGTGCTTTCATTTGGTTGGCAGGAGATGACTCCAACTCAAAGCAGGGAAGCCAGGAGGCTCATGTTCACGTTCCTCTGCCCCAAAATGGATTAATGTTGTCAGCAACTCAAAAGCAGTCGAATACACATGGGCGTGGTAAGAGAGAAGTGGCTTTCAATATAGGTGGGTCGTCATCTGATTCAGGGCCTTCTGAAAATATAGAGAATAATCGATCAAAAAAGAGAGGGAGGTCATCAAGCCATGTGAACGGCAGACGAGAATCACCACCACCAAACCATGTGGAGGCAGAGAGACAACGACGTGAACGGCTGAATCATCGATTCTATGCTCTGAGAGCTGCTGTTCCAAATGTGTCAAGGATGGACAAAGCTTCTTTACTTGCTGATGCAGTTGAGTACATCAATAATCTGAAGACAAAGATTGATAAACTGGAGGCCAAAATCCAAGCACAAACCAAGATACCCAAAGTGGGTAGCATCAACTCCATAAGTTACAGAGCATCTGCTGTTATGGAAGTGGATGTGAAATTTGTAGGCTCTGAAGCAATGATTCGAGTTCGGAGTACGGATAATGAGGACTATCCATATGCAAGATTGATGAATGCACTCAAAGACCTCGAATTGCATATTTATCATGCAAGCATTTCAAGTGTACGTGAAGGAGTTTATGCTTCAAGATGTTGTGGCACGAGTTCCATTTGGATTCACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

389

Amino Acids

43.35

Weight (kDa)

8.24

Isoelectric Point (pI)

52.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 24 - 169 8.6e-18 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 243 - 289 1.4e-11 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 132
AciI CCGC 1 cut(s) 103
AcsI RAATTY 2 cut(s) 421, 980
AcuI CTGAAG 4 cut(s) 80, 390, 884, 1014
AfaI GTAC 3 cut(s) 851, 1018, 1107
AfiI CCNNNNNNNGG 6 cut(s) 132, 269, 270, 539, 736, 923
AgsI TTSAA 5 cut(s) 74, 332, 610, 1101, 1128
AjiI CACGTC 2 cut(s) 349, 755
AjnI CCWGG 2 cut(s) 113, 504
AjuI GAANNNNNNNTTGG 2 cut(s) 78, 110
AluBI AGCT 2 cut(s) 791, 824
AluI AGCT 2 cut(s) 791, 824
Alw26I GTCTC 4 cut(s) 204, 339, 388, 739
AoxI GGCC 6 cut(s) 183, 190, 409, 436, 638, 888
ApaI GGGCCC 1 cut(s) 440
ApeKI GCWGC 1 cut(s) 791
ApoI RAATTY 2 cut(s) 421, 980
AseI ATTAAT 1 cut(s) 545
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 4 cut(s) 183, 436, 437, 638
AsuHPI GGTGA 3 cut(s) 17, 21, 708
BaeGI GKGCMC 1 cut(s) 440
BanII GRGCYC 1 cut(s) 440
BauI CACGAG 1 cut(s) 1141
BbsI GAAGAC 2 cut(s) 339, 872
BbvCI CCTCAGC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 778
BccI CCATC 2 cut(s) 268, 808
BceAI ACGGC 4 cut(s) 181, 283, 718, 776
BciT130I CCWGG 2 cut(s) 115, 506
BcoDI GTCTC 4 cut(s) 204, 339, 388, 739
BfaI CTAG 1 cut(s) 453
BfoI RGCGCY 1 cut(s) 299
BisI GCNGC 1 cut(s) 792
BlsI GCNGC 1 cut(s) 793
Bme1390I CCNGG 2 cut(s) 115, 506
BmgBI CACGTC 2 cut(s) 349, 755
BmgT120I GGNCC 4 cut(s) 183, 436, 437, 638
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 2 cut(s) 115, 506
BmsI GCATC 3 cut(s) 829, 939, 962
BpiI GAAGAC 2 cut(s) 339, 872
BpmI CTGGAG 1 cut(s) 905
Bpu10I CCTNAGC 1 cut(s) 58
Bsa29I ATCGAT 2 cut(s) 664, 772
BsaAI YACGTR 1 cut(s) 1109
BsaJI CCNNGG 1 cut(s) 114
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 6 cut(s) 132, 269, 270, 539, 736, 923
Bse1I ACTGG 1 cut(s) 888
Bse3DI GCAATG 2 cut(s) 65, 1005
BseBI CCWGG 2 cut(s) 115, 506
BseCI ATCGAT 2 cut(s) 664, 772
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 4 cut(s) 218, 279, 819, 979
BseLI CCNNNNNNNGG 6 cut(s) 132, 269, 270, 539, 736, 923
BseMI GCAATG 2 cut(s) 65, 1005
BseMII CTCAG 2 cut(s) 72, 776
BseNI ACTGG 1 cut(s) 888
BseSI GKGCMC 1 cut(s) 440
BseXI GCAGC 1 cut(s) 778
BshFI GGCC 6 cut(s) 185, 192, 411, 438, 640, 890
BshVI ATCGAT 2 cut(s) 664, 772
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 6 cut(s) 132, 269, 270, 539, 736, 923
BsmAI GTCTC 4 cut(s) 204, 339, 388, 739
BsmBI CGTCTC 2 cut(s) 339, 388
BsmI GAATGC 3 cut(s) 234, 445, 1060
BsnI GGCC 6 cut(s) 185, 192, 411, 438, 640, 890
Bsp120I GGGCCC 1 cut(s) 436
Bsp1286I GDGCHC 1 cut(s) 440
Bsp143I GATC 2 cut(s) 288, 665
BspACI CCGC 1 cut(s) 103
BspANI GGCC 6 cut(s) 185, 192, 411, 438, 640, 890
BspCNI CTCAG 2 cut(s) 71, 777
BspDI ATCGAT 2 cut(s) 664, 772
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 438
BsrDI GCAATG 2 cut(s) 65, 1005
BsrI ACTGG 1 cut(s) 888
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 2 cut(s) 288, 665
BssSI CACGAG 1 cut(s) 1141
Bst2BI CACGAG 1 cut(s) 1141
Bst2UI CCWGG 2 cut(s) 115, 506
Bst4CI ACNGT 3 cut(s) 152, 382, 396
BstBAI YACGTR 1 cut(s) 1109
BstC8I GCNNGC 1 cut(s) 1093
BstDEI CTNAG 2 cut(s) 58, 785
BstF5I GGATG 4 cut(s) 218, 279, 819, 979
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 2 cut(s) 291, 668
BstMAI GTCTC 4 cut(s) 204, 339, 388, 739
BstMBI GATC 2 cut(s) 288, 665
BstMWI GCNNNNNNNGC 1 cut(s) 788
BstNI CCWGG 2 cut(s) 115, 506
BstSCI CCNGG 2 cut(s) 113, 504
BstSLI GKGCMC 1 cut(s) 440
BstV1I GCAGC 1 cut(s) 778
BstV2I GAAGAC 2 cut(s) 339, 872
BstXI CCANNNNNNTGG 1 cut(s) 433
Bsu15I ATCGAT 2 cut(s) 664, 772
BsuRI GGCC 6 cut(s) 185, 192, 411, 438, 640, 890
BsuTUI ATCGAT 2 cut(s) 664, 772
BtrI CACGTC 2 cut(s) 349, 755
BtsCI GGATG 4 cut(s) 218, 279, 819, 979
Cac8I GCNNGC 1 cut(s) 1093
CciI TCATGA 1 cut(s) 304
CfoI GCGC 1 cut(s) 298
Cfr13I GGNCC 4 cut(s) 183, 436, 437, 638
ClaI ATCGAT 2 cut(s) 664, 772
Csp6I GTAC 3 cut(s) 850, 1017, 1106
CspCI CAANNNNNGTGG 4 cut(s) 598, 633, 714, 749
CviAII CATG 9 cut(s) 21, 180, 305, 313, 515, 581, 695, 731, 1088
CviQI GTAC 3 cut(s) 850, 1017, 1106
DdeI CTNAG 2 cut(s) 58, 785
DpnI GATC 2 cut(s) 290, 667
DpnII GATC 2 cut(s) 288, 665
Eco24I GRGCYC 1 cut(s) 440
Eco57I CTGAAG 4 cut(s) 80, 390, 884, 1014
EcoO109I RGGNCCY 2 cut(s) 437, 638
EcoRI GAATTC 1 cut(s) 421
EcoRII CCWGG 2 cut(s) 113, 504
EcoT38I GRGCYC 1 cut(s) 440
Esp3I CGTCTC 2 cut(s) 339, 388
FaeI CATG 9 cut(s) 24, 183, 308, 316, 518, 584, 698, 734, 1091
FatI CATG 9 cut(s) 20, 179, 304, 312, 514, 580, 694, 730, 1087
FauI CCCGC 1 cut(s) 110
FauNDI CATATG 1 cut(s) 1039
Fnu4HI GCNGC 1 cut(s) 792
FokI GGATG 4 cut(s) 205, 286, 826, 986
FriOI GRGCYC 1 cut(s) 440
Fsp4HI GCNGC 1 cut(s) 792
FspBI CTAG 1 cut(s) 453
GlaI GCGC 1 cut(s) 297
GluI GCNGC 1 cut(s) 792
GsuI CTGGAG 1 cut(s) 905
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 6 cut(s) 185, 192, 411, 438, 640, 890
HapII CCGG 1 cut(s) 186
HhaI GCGC 1 cut(s) 298
Hin1II CATG 9 cut(s) 24, 183, 308, 316, 518, 584, 698, 734, 1091
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HindIII AAGCTT 1 cut(s) 822
HinfI GANTC 9 cut(s) 317, 356, 482, 632, 713, 766, 774, 1003, 1156
HpaII CCGG 1 cut(s) 186
HphI GGTGA 3 cut(s) 17, 21, 708
Hpy166II GTNNAC 6 cut(s) 121, 280, 520, 700, 758, 1106
Hpy188III TCNNGA 4 cut(s) 47, 133, 305, 1128
Hpy8I GTNNAC 6 cut(s) 121, 280, 520, 700, 758, 1106
Hpy99I CGWCG 2 cut(s) 161, 756
HpyAV CCTTC 2 cut(s) 651, 1106
HpyCH4III ACNGT 3 cut(s) 152, 382, 396
HpyCH4IV ACGT 4 cut(s) 348, 522, 754, 1108
HpyCH4V TGCA 6 cut(s) 445, 842, 1043, 1058, 1078, 1091
HpyF10VI GCNNNNNNNGC 1 cut(s) 788
HpyF3I CTNAG 2 cut(s) 58, 785
HpySE526I ACGT 4 cut(s) 348, 522, 754, 1108
Hsp92II CATG 9 cut(s) 24, 183, 308, 316, 518, 584, 698, 734, 1091
HspAI GCGC 1 cut(s) 296
Kzo9I GATC 2 cut(s) 288, 665
Lsp1109I GCAGC 1 cut(s) 778
LweI GCATC 3 cut(s) 829, 939, 962
MaeI CTAG 1 cut(s) 453
MaeII ACGT 4 cut(s) 348, 522, 754, 1108
MaeIII GTNAC 3 cut(s) 152, 349, 944
MalI GATC 2 cut(s) 290, 667
MboI GATC 2 cut(s) 288, 665
MboII GAAGA 4 cut(s) 18, 344, 441, 877
MhlI GDGCHC 1 cut(s) 440
MluCI AATT 4 cut(s) 86, 421, 980, 1073
MlyI GAGTC 3 cut(s) 311, 350, 476
MmeI TCCRAC 2 cut(s) 450, 510
MseI TTAA 2 cut(s) 339, 545
MslI CAYNNNNRTG 1 cut(s) 585
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 2 cut(s) 115, 506
Mva1269I GAATGC 3 cut(s) 234, 445, 1060
MvaI CCWGG 2 cut(s) 115, 506
MwoI GCNNNNNNNGC 1 cut(s) 788
NdeI CATATG 1 cut(s) 1039
NdeII GATC 2 cut(s) 288, 665
NlaIII CATG 9 cut(s) 24, 183, 308, 316, 518, 584, 698, 734, 1091
NlaIV GGNNCC 1 cut(s) 438
NmuCI GTSAC 1 cut(s) 349
PagI TCATGA 1 cut(s) 304
PcsI WCGNNNNNNNCGW 2 cut(s) 156, 165
PctI GAATGC 3 cut(s) 234, 445, 1060
PfeI GAWTC 6 cut(s) 632, 713, 766, 774, 1003, 1156
PflMI CCANNNNNTGG 1 cut(s) 132
PkrI GCNGC 1 cut(s) 793
PleI GAGTC 3 cut(s) 311, 350, 476
PpsI GAGTC 3 cut(s) 311, 350, 476
Ppu21I YACGTR 1 cut(s) 1109
PshBI ATTAAT 1 cut(s) 545
Psp6I CCWGG 2 cut(s) 113, 504
PspGI CCWGG 2 cut(s) 113, 504
PspN4I GGNNCC 1 cut(s) 438
PspOMI GGGCCC 1 cut(s) 436
PspPI GGNCC 4 cut(s) 183, 436, 437, 638
RsaI GTAC 3 cut(s) 851, 1018, 1107
RsaNI GTAC 3 cut(s) 850, 1017, 1106
RseI CAYNNNNRTG 1 cut(s) 585
SaqAI TTAA 2 cut(s) 339, 545
SatI GCNGC 1 cut(s) 792
Sau3AI GATC 2 cut(s) 288, 665
Sau96I GGNCC 4 cut(s) 183, 436, 437, 638
SchI GAGTC 3 cut(s) 311, 350, 476
ScrFI CCNGG 2 cut(s) 115, 506
SduI GDGCHC 1 cut(s) 440
SfaNI GCATC 3 cut(s) 829, 939, 962
SmiMI CAYNNNNRTG 1 cut(s) 585
Sse9I AATT 4 cut(s) 86, 421, 980, 1073
SsiI CCGC 1 cut(s) 103
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 2 cut(s) 113, 504
TaaI ACNGT 3 cut(s) 152, 382, 396
TaiI ACGT 4 cut(s) 351, 525, 757, 1111
TaqI TCGA 6 cut(s) 291, 572, 664, 772, 1006, 1071
TasI AATT 4 cut(s) 86, 421, 980, 1073
TatI WGTACW 1 cut(s) 849
TfiI GAWTC 6 cut(s) 632, 713, 766, 774, 1003, 1156
Tru1I TTAA 2 cut(s) 339, 545
Tru9I TTAA 2 cut(s) 339, 545
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 1 cut(s) 791
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 3 cut(s) 79, 451, 1067
TspGWI ACGGA 2 cut(s) 357, 1034
Van91I CCANNNNNTGG 1 cut(s) 132
VspI ATTAAT 1 cut(s) 545
XapI RAATTY 2 cut(s) 421, 980
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XspI CTAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.