Rh7BG078100
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000212
Physical Location & Seq
Reverse (-)
5582035 .. 5584773
2739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG078100.1

Sequence Viewer

Length: 1137 bp
ATGGGTGAGATTATTTCCTCATGTTCTTCACCCTACAATGTTTATCCAGAAACTACCTCAGCCACATTGCTTCAACAACGTCTCCAATTCATACTTCAGAACCGCCCTGAAACCTGGGTTTACTCCATTTTCTGGAAAGCCTCCAAAGACAGTAACGACGACAACGGCGTTTCTTTGTCATGGGCCGGAGGCCATTTCAGAGGCATTAGAGACTTCTCATCCAAAAAATCAAGCATTCAGAACTCAGATAATAACTACCGACCCAGATTTGGGATGGTCAACAGAGAGATCGAAGCGCTGTGTCATGACGACATGGACTCGGAGAGATTTGAAGACATTAACGGAGACGTGACTGACTCCGAGTGGTTCTACTTCTACACCGTCTCTTTAACACAGTCGTTTGCTGCAGGCCACAATGGGAATTCCAACATTCTGGGCCGTGTGCATTCTTCTAGTGCTTTCATTTGGTTGGCAGGAGATGCAACTCAAAAGCAGTCGAATACACATGGGCGTGGTAAGAGAGAAGTGGCTTTCAATATAGGTGGGTCGTCATCTGATTCAGGGCCTTCTGAAAATATAGAGAATAATCGATCAAAAAAGAGAGGGAGGTCATCAAGCCATGTGAACGGCAGACGAGAATCACCACCACTAAACCATGTGGAGGCAGAGAGACAACGACGTGAAAGGCTGAATCATCGATTCTATGCTCTGAGAGCTGCTGTTCCAAATGTGTCAAGGATGGACAAAGCTTCTTTACTTGCTGATGCAGTTGAGTACATCAATAATCTGAAGACAAAGATTGATAAACTGGAGGCCAAAATCCAAGCACAAACCAAGATACCCAAAGTGGGTAGCACCAACTCCATAAGTTACAGAGCATCTGCTGTTATGGAAGTGGATGTGAAATTTGTAGGCTCTGAAGCAATGATTCGAGTTCGGAGTACGGATAATGAGGACTATCCATATGCAAGATTGATGAATGCACTCAAAGACCTCGAATTGCATATTTATCATGCAAGCATTTCAAGTGTGAAGGAGTTTATGCTTCAAGATGTTGTGGCACGAGTTCCATTTGGATTCACAAGTGAGGAGGCCATGAGAACCGCCATTATAAAAAGATTGTCAAACTTTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

378

Amino Acids

42.64

Weight (kDa)

8.87

Isoelectric Point (pI)

52.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 24 - 168 4e-20 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 218 - 264 1e-11 Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant PF22754 298 - 370 1e-05 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1112
AccB7I CCANNNNNTGG 1 cut(s) 132
AciI CCGC 2 cut(s) 103, 1104
AcsI RAATTY 2 cut(s) 421, 905
AcuI CTGAAG 3 cut(s) 80, 809, 939
AfaI GTAC 2 cut(s) 776, 943
AfeI AGCGCT 1 cut(s) 297
AfiI CCNNNNNNNGG 5 cut(s) 132, 269, 270, 661, 848
AgsI TTSAA 5 cut(s) 74, 332, 535, 1026, 1049
AjiI CACGTC 2 cut(s) 349, 680
AjnI CCWGG 1 cut(s) 113
AjuI GAANNNNNNNTTGG 2 cut(s) 78, 110
AluBI AGCT 2 cut(s) 716, 749
AluI AGCT 2 cut(s) 716, 749
Alw26I GTCTC 5 cut(s) 86, 204, 339, 388, 664
Aor51HI AGCGCT 1 cut(s) 297
AoxI GGCC 7 cut(s) 183, 190, 409, 436, 563, 813, 1092
ApeKI GCWGC 2 cut(s) 404, 716
ApoI RAATTY 2 cut(s) 421, 905
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 3 cut(s) 183, 436, 563
AsuHPI GGTGA 3 cut(s) 17, 21, 633
BauI CACGAG 1 cut(s) 1062
BbsI GAAGAC 2 cut(s) 339, 797
BbvCI CCTCAGC 1 cut(s) 58
BbvI GCAGC 2 cut(s) 391, 703
BccI CCATC 2 cut(s) 268, 733
BceAI ACGGC 3 cut(s) 181, 423, 643
BciT130I CCWGG 1 cut(s) 115
BcoDI GTCTC 5 cut(s) 86, 204, 339, 388, 664
BfaI CTAG 2 cut(s) 453, 1135
BfmI CTRYAG 1 cut(s) 405
BfoI RGCGCY 1 cut(s) 299
BisI GCNGC 2 cut(s) 405, 717
BlsI GCNGC 2 cut(s) 406, 718
Bme1390I CCNGG 1 cut(s) 115
BmgBI CACGTC 2 cut(s) 349, 680
BmgT120I GGNCC 3 cut(s) 183, 436, 563
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 3 cut(s) 469, 754, 887
BpiI GAAGAC 2 cut(s) 339, 797
BpmI CTGGAG 1 cut(s) 830
Bpu10I CCTNAGC 1 cut(s) 58
Bsa29I ATCGAT 2 cut(s) 589, 697
BsaJI CCNNGG 1 cut(s) 114
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 5 cut(s) 132, 269, 270, 661, 848
Bse1I ACTGG 1 cut(s) 813
Bse3DI GCAATG 2 cut(s) 65, 930
BseBI CCWGG 1 cut(s) 115
BseCI ATCGAT 2 cut(s) 589, 697
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 4 cut(s) 218, 279, 744, 904
BseLI CCNNNNNNNGG 5 cut(s) 132, 269, 270, 661, 848
BseMI GCAATG 2 cut(s) 65, 930
BseMII CTCAG 3 cut(s) 72, 258, 701
BseNI ACTGG 1 cut(s) 813
BseRI GAGGAG 1 cut(s) 1103
BseXI GCAGC 2 cut(s) 391, 703
BshFI GGCC 7 cut(s) 185, 192, 411, 438, 565, 815, 1094
BshVI ATCGAT 2 cut(s) 589, 697
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 5 cut(s) 132, 269, 270, 661, 848
BsmAI GTCTC 5 cut(s) 86, 204, 339, 388, 664
BsmBI CGTCTC 3 cut(s) 86, 339, 388
BsmI GAATGC 3 cut(s) 234, 445, 985
BsnI GGCC 7 cut(s) 185, 192, 411, 438, 565, 815, 1094
Bsp143I GATC 2 cut(s) 288, 590
BspACI CCGC 2 cut(s) 103, 1104
BspANI GGCC 7 cut(s) 185, 192, 411, 438, 565, 815, 1094
BspCNI CTCAG 3 cut(s) 71, 257, 702
BspDI ATCGAT 2 cut(s) 589, 697
BspHI TCATGA 1 cut(s) 304
BspMAI CTGCAG 1 cut(s) 409
BsrDI GCAATG 2 cut(s) 65, 930
BsrI ACTGG 1 cut(s) 813
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 2 cut(s) 288, 590
BssSI CACGAG 1 cut(s) 1062
Bst2BI CACGAG 1 cut(s) 1062
Bst2UI CCWGG 1 cut(s) 115
Bst4CI ACNGT 3 cut(s) 152, 382, 396
BstAPI GCANNNNNTGC 1 cut(s) 479
BstC8I GCNNGC 2 cut(s) 409, 1018
BstDEI CTNAG 3 cut(s) 58, 244, 710
BstF5I GGATG 4 cut(s) 218, 279, 744, 904
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 2 cut(s) 291, 593
BstMAI GTCTC 5 cut(s) 86, 204, 339, 388, 664
BstMBI GATC 2 cut(s) 288, 590
BstMWI GCNNNNNNNGC 2 cut(s) 479, 713
BstNI CCWGG 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 405
BstV1I GCAGC 2 cut(s) 391, 703
BstV2I GAAGAC 2 cut(s) 339, 797
BstXI CCANNNNNNTGG 1 cut(s) 433
Bsu15I ATCGAT 2 cut(s) 589, 697
BsuRI GGCC 7 cut(s) 185, 192, 411, 438, 565, 815, 1094
BsuTUI ATCGAT 2 cut(s) 589, 697
BtrI CACGTC 2 cut(s) 349, 680
BtsCI GGATG 4 cut(s) 218, 279, 744, 904
Cac8I GCNNGC 2 cut(s) 409, 1018
CciI TCATGA 1 cut(s) 304
CfoI GCGC 1 cut(s) 298
Cfr13I GGNCC 3 cut(s) 183, 436, 563
ClaI ATCGAT 2 cut(s) 589, 697
Csp6I GTAC 2 cut(s) 775, 942
CspCI CAANNNNNGTGG 2 cut(s) 523, 558
CviAII CATG 9 cut(s) 21, 180, 305, 313, 506, 620, 656, 1013, 1096
CviQI GTAC 2 cut(s) 775, 942
DdeI CTNAG 3 cut(s) 58, 244, 710
DpnI GATC 2 cut(s) 290, 592
DpnII GATC 2 cut(s) 288, 590
Eco47III AGCGCT 1 cut(s) 297
Eco57I CTGAAG 3 cut(s) 80, 809, 939
EcoO109I RGGNCCY 1 cut(s) 563
EcoRI GAATTC 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 113
Esp3I CGTCTC 3 cut(s) 86, 339, 388
FaeI CATG 9 cut(s) 24, 183, 308, 316, 509, 623, 659, 1016, 1099
FatI CATG 9 cut(s) 20, 179, 304, 312, 505, 619, 655, 1012, 1095
FauNDI CATATG 1 cut(s) 964
Fnu4HI GCNGC 2 cut(s) 405, 717
FokI GGATG 4 cut(s) 205, 286, 751, 911
Fsp4HI GCNGC 2 cut(s) 405, 717
FspBI CTAG 2 cut(s) 453, 1135
GlaI GCGC 1 cut(s) 297
GluI GCNGC 2 cut(s) 405, 717
GsuI CTGGAG 1 cut(s) 830
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 7 cut(s) 185, 192, 411, 438, 565, 815, 1094
HapII CCGG 1 cut(s) 186
HhaI GCGC 1 cut(s) 298
Hin1II CATG 9 cut(s) 24, 183, 308, 316, 509, 623, 659, 1016, 1099
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HindIII AAGCTT 1 cut(s) 747
HinfI GANTC 8 cut(s) 317, 356, 557, 638, 691, 699, 928, 1077
HpaII CCGG 1 cut(s) 186
HphI GGTGA 3 cut(s) 17, 21, 633
Hpy166II GTNNAC 3 cut(s) 121, 280, 625
Hpy188III TCNNGA 4 cut(s) 47, 133, 305, 1049
Hpy8I GTNNAC 3 cut(s) 121, 280, 625
Hpy99I CGWCG 2 cut(s) 161, 681
HpyAV CCTTC 2 cut(s) 576, 1027
HpyCH4III ACNGT 3 cut(s) 152, 382, 396
HpyCH4IV ACGT 3 cut(s) 79, 348, 679
HpyCH4V TGCA 8 cut(s) 407, 445, 482, 767, 968, 983, 1003, 1016
HpyF10VI GCNNNNNNNGC 2 cut(s) 479, 713
HpyF3I CTNAG 3 cut(s) 58, 244, 710
HpySE526I ACGT 3 cut(s) 79, 348, 679
Hsp92II CATG 9 cut(s) 24, 183, 308, 316, 509, 623, 659, 1016, 1099
HspAI GCGC 1 cut(s) 296
Kzo9I GATC 2 cut(s) 288, 590
Lsp1109I GCAGC 2 cut(s) 391, 703
LweI GCATC 3 cut(s) 469, 754, 887
MaeI CTAG 2 cut(s) 453, 1135
MaeII ACGT 3 cut(s) 79, 348, 679
MaeIII GTNAC 3 cut(s) 152, 349, 869
MalI GATC 2 cut(s) 290, 592
MboI GATC 2 cut(s) 288, 590
MboII GAAGA 4 cut(s) 18, 344, 441, 802
MluCI AATT 4 cut(s) 86, 421, 905, 998
MlyI GAGTC 2 cut(s) 311, 350
MmeI TCCRAC 1 cut(s) 450
MseI TTAA 2 cut(s) 339, 389
MslI CAYNNNNRTG 1 cut(s) 510
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 115
Mva1269I GAATGC 3 cut(s) 234, 445, 985
MvaI CCWGG 1 cut(s) 115
MwoI GCNNNNNNNGC 2 cut(s) 479, 713
NdeI CATATG 1 cut(s) 964
NdeII GATC 2 cut(s) 288, 590
NlaIII CATG 9 cut(s) 24, 183, 308, 316, 509, 623, 659, 1016, 1099
NmuCI GTSAC 1 cut(s) 349
PagI TCATGA 1 cut(s) 304
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 3 cut(s) 234, 445, 985
PfeI GAWTC 6 cut(s) 557, 638, 691, 699, 928, 1077
PflMI CCANNNNNTGG 1 cut(s) 132
PkrI GCNGC 2 cut(s) 406, 718
PleI GAGTC 2 cut(s) 311, 350
PpsI GAGTC 2 cut(s) 311, 350
PsiI TTATAA 1 cut(s) 1112
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspPI GGNCC 3 cut(s) 183, 436, 563
PstI CTGCAG 1 cut(s) 409
RsaI GTAC 2 cut(s) 776, 943
RsaNI GTAC 2 cut(s) 775, 942
RseI CAYNNNNRTG 1 cut(s) 510
SaqAI TTAA 2 cut(s) 339, 389
SatI GCNGC 2 cut(s) 405, 717
Sau3AI GATC 2 cut(s) 288, 590
Sau96I GGNCC 3 cut(s) 183, 436, 563
SchI GAGTC 2 cut(s) 311, 350
ScrFI CCNGG 1 cut(s) 115
SfaNI GCATC 3 cut(s) 469, 754, 887
SfcI CTRYAG 1 cut(s) 405
SmiMI CAYNNNNRTG 1 cut(s) 510
Sse9I AATT 4 cut(s) 86, 421, 905, 998
SsiI CCGC 2 cut(s) 103, 1104
SspMI CTAG 2 cut(s) 453, 1135
StyD4I CCNGG 1 cut(s) 113
TaaI ACNGT 3 cut(s) 152, 382, 396
TaiI ACGT 3 cut(s) 82, 351, 682
TaqI TCGA 6 cut(s) 291, 497, 589, 697, 931, 996
TasI AATT 4 cut(s) 86, 421, 905, 998
TatI WGTACW 1 cut(s) 774
TfiI GAWTC 6 cut(s) 557, 638, 691, 699, 928, 1077
Tru1I TTAA 2 cut(s) 339, 389
Tru9I TTAA 2 cut(s) 339, 389
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 2 cut(s) 404, 716
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 3 cut(s) 79, 451, 992
TspGWI ACGGA 2 cut(s) 357, 959
Van91I CCANNNNNTGG 1 cut(s) 132
XapI RAATTY 2 cut(s) 421, 905
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XspI CTAG 2 cut(s) 453, 1135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.