Rmu_sc0005017.1_g000006
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005017.1
OG0000212
Physical Location & Seq
Forward (+)
32615 .. 37059
4445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005017.1_g000006.1.cds

Sequence Viewer

Length: 702 bp
atgacctggaccccacaaccgaccctagacaatacggacagcgacgcctctcctctcatcggctcggctcaagccggtcgatcaagccaggtgagacagtgcgacattgagagtcaggccttcggttccgggacctcaatctggctgaaaggggcccacaagcttcagtttaacaactgcgagagagccaaagaggcccaaatccacgagatcgagaccttgatctgcatcccaacttccgacggtgttggattagccgacccggaaacaagaccgttcgagttcatcaaccggaacttctccatttttgacatcggcatcatcgccggcgtgcaagaagaggatcacagctcgtacaatgacgacaagaaacatgtttttggttctagtaagaagaagaacggagctccgaacccaaacccgaacttcgtagattccgactgccagatgaaaagagcgccaaagaaacggggccggaaacccgggctgggccgagacacgccgctcaaccacgtggagggggagcggcagcggcgggagaagctcacctcgcaagggtggcattggaagcgagggagtgagcgtgaaggtgaggaaggcggcgttggaagcgagggaatgagcccggaagaaggaagaaggaagaagaaagagataaaaacgaagggaaaaaaatataacagaaaaaaaaaatttatttaa

Protein Analysis

233

Amino Acids

26.11

Weight (kDa)

9.3

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 505, 526
AciI CCGC 5 cut(s) 503, 526, 532, 535, 600
AclWI GGATC 1 cut(s) 351
AcsI RAATTY 1 cut(s) 692
AcuI CTGAAG 1 cut(s) 149
AcvI CACGTG 1 cut(s) 514
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 6 cut(s) 59, 141, 488, 517, 555, 632
AflIII ACRYGT 1 cut(s) 373
AjnI CCWGG 2 cut(s) 5, 87
AjuI GAANNNNNNNTTGG 2 cut(s) 588, 620
AluBI AGCT 4 cut(s) 163, 351, 407, 544
AluI AGCT 4 cut(s) 163, 351, 407, 544
Alw21I GWGCWC 1 cut(s) 409
Alw26I GTCTC 3 cut(s) 88, 209, 489
AlwI GGATC 1 cut(s) 351
Ama87I CYCGRG 1 cut(s) 482
AoxI GGCC 5 cut(s) 117, 153, 195, 472, 490
ApaI GGGCCC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 529
ApoI RAATTY 1 cut(s) 692
AspLEI GCGC 1 cut(s) 460
AspS9I GGNCC 7 cut(s) 9, 132, 153, 154, 196, 472, 490
AsuC2I CCSGG 5 cut(s) 130, 263, 483, 484, 626
AsuHPI GGTGA 3 cut(s) 103, 538, 602
AvaI CYCGRG 1 cut(s) 482
AvaII GGWCC 2 cut(s) 9, 132
BaeGI GKGCMC 1 cut(s) 157
BanII GRGCYC 3 cut(s) 157, 409, 626
BauI CACGAG 1 cut(s) 206
BbrPI CACGTG 1 cut(s) 514
Bbv12I GWGCWC 1 cut(s) 409
BbvI GCAGC 1 cut(s) 541
BciT130I CCWGG 2 cut(s) 7, 89
BcnI CCSGG 5 cut(s) 130, 263, 483, 484, 626
BcoDI GTCTC 3 cut(s) 88, 209, 489
BfaI CTAG 2 cut(s) 26, 387
BfoI RGCGCY 1 cut(s) 461
BglI GCCNNNNNGGC 1 cut(s) 194
BisI GCNGC 5 cut(s) 503, 527, 530, 533, 601
BlsI GCNGC 5 cut(s) 504, 528, 531, 534, 602
Bme1390I CCNGG 7 cut(s) 7, 89, 130, 263, 483, 484, 626
Bme18I GGWCC 2 cut(s) 9, 132
BmeT110I CYCGRG 1 cut(s) 482
BmgT120I GGNCC 7 cut(s) 9, 132, 153, 154, 196, 472, 490
BmiI GGNNCC 6 cut(s) 11, 127, 133, 154, 155, 473
BmrFI CCNGG 7 cut(s) 7, 89, 130, 263, 483, 484, 626
BmsI GCATC 2 cut(s) 237, 327
BpuEI CTTGAG 1 cut(s) 54
BpuMI CCSGG 5 cut(s) 130, 263, 483, 484, 626
BsaAI YACGTR 1 cut(s) 514
BsaBI GATNNNNATC 1 cut(s) 227
BsaHI GRCGYC 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 482
BsaWI WCCGGW 1 cut(s) 291
BsaXI ACNNNNNCTCC 2 cut(s) 568, 598
Bsc4I CCNNNNNNNGG 6 cut(s) 59, 141, 488, 517, 555, 632
Bse118I RCCGGY 2 cut(s) 74, 326
Bse8I GATNNNNATC 1 cut(s) 227
BseBI CCWGG 2 cut(s) 7, 89
BseDI CCNNGG 1 cut(s) 482
BseGI GGATG 1 cut(s) 228
BseJI GATNNNNATC 1 cut(s) 227
BseLI CCNNNNNNNGG 6 cut(s) 59, 141, 488, 517, 555, 632
BseRI GAGGAG 1 cut(s) 42
BseSI GKGCMC 1 cut(s) 157
BseXI GCAGC 1 cut(s) 541
BseYI CCCAGC 1 cut(s) 487
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 5 cut(s) 119, 155, 197, 474, 492
BsiEI CGRYCG 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 409
BsiHKCI CYCGRG 1 cut(s) 482
BsiSI CCGG 8 cut(s) 75, 129, 263, 292, 327, 475, 483, 626
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 6 cut(s) 59, 141, 488, 517, 555, 632
BsmAI GTCTC 3 cut(s) 88, 209, 489
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 5 cut(s) 119, 155, 197, 474, 492
Bso31I GGTCTC 1 cut(s) 209
BsoBI CYCGRG 1 cut(s) 482
Bsp120I GGGCCC 1 cut(s) 153
Bsp1286I GDGCHC 3 cut(s) 157, 409, 626
Bsp143I GATC 4 cut(s) 80, 210, 222, 343
BspACI CCGC 5 cut(s) 503, 526, 532, 535, 600
BspANI GGCC 5 cut(s) 119, 155, 197, 474, 492
BspLI GGNNCC 6 cut(s) 11, 127, 133, 154, 155, 473
BspPI GGATC 1 cut(s) 351
BspTNI GGTCTC 1 cut(s) 209
BsrBI CCGCTC 2 cut(s) 505, 526
BsrFI RCCGGY 2 cut(s) 74, 326
BssAI RCCGGY 2 cut(s) 74, 326
BssECI CCNNGG 1 cut(s) 482
BssMI GATC 4 cut(s) 80, 210, 222, 343
BssNI GRCGYC 1 cut(s) 45
BssSI CACGAG 1 cut(s) 206
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 2 cut(s) 7, 89
Bst4CI ACNGT 3 cut(s) 99, 245, 276
Bst6I CTCTTC 1 cut(s) 333
BstACI GRCGYC 1 cut(s) 45
BstBAI YACGTR 1 cut(s) 514
BstC8I GCNNGC 2 cut(s) 328, 332
BstF5I GGATG 1 cut(s) 228
BstH2I RGCGCY 1 cut(s) 461
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 4 cut(s) 83, 213, 225, 346
BstMAI GTCTC 3 cut(s) 88, 209, 489
BstMBI GATC 4 cut(s) 80, 210, 222, 343
BstMCI CGRYCG 1 cut(s) 79
BstMWI GCNNNNNNNGC 7 cut(s) 194, 532, 541, 550, 559, 568, 609
BstNI CCWGG 2 cut(s) 7, 89
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 7 cut(s) 5, 87, 128, 261, 481, 482, 624
BstSLI GKGCMC 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 541
BsuRI GGCC 5 cut(s) 119, 155, 197, 474, 492
BtgZI GCGATG 1 cut(s) 307
BtsCI GGATG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 104
Cac8I GCNNGC 2 cut(s) 328, 332
CfoI GCGC 1 cut(s) 460
Cfr10I RCCGGY 2 cut(s) 74, 326
Cfr13I GGNCC 7 cut(s) 9, 132, 153, 154, 196, 472, 490
Cfr9I CCCGGG 1 cut(s) 482
CseI GACGC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 355
CviAII CATG 1 cut(s) 374
CviQI GTAC 1 cut(s) 355
DpnI GATC 4 cut(s) 82, 212, 224, 345
DpnII GATC 4 cut(s) 80, 210, 222, 343
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Ecl136II GAGCTC 1 cut(s) 407
Eco147I AGGCCT 1 cut(s) 119
Eco24I GRGCYC 3 cut(s) 157, 409, 626
Eco31I GGTCTC 1 cut(s) 209
Eco47I GGWCC 2 cut(s) 9, 132
Eco53kI GAGCTC 1 cut(s) 407
Eco57I CTGAAG 1 cut(s) 149
Eco72I CACGTG 1 cut(s) 514
Eco88I CYCGRG 1 cut(s) 482
EcoICRI GAGCTC 1 cut(s) 407
EcoO109I RGGNCCY 2 cut(s) 132, 153
EcoRII CCWGG 2 cut(s) 5, 87
EcoT38I GRGCYC 3 cut(s) 157, 409, 626
FaeI CATG 1 cut(s) 377
FaiI YATR 2 cut(s) 375, 678
FaqI GGGAC 1 cut(s) 145
FatI CATG 1 cut(s) 373
FauI CCCGC 1 cut(s) 528
Fnu4HI GCNGC 5 cut(s) 503, 527, 530, 533, 601
FokI GGATG 1 cut(s) 215
FriOI GRGCYC 3 cut(s) 157, 409, 626
Fsp4HI GCNGC 5 cut(s) 503, 527, 530, 533, 601
FspBI CTAG 2 cut(s) 26, 387
GlaI GCGC 1 cut(s) 459
GluI GCNGC 5 cut(s) 503, 527, 530, 533, 601
GsaI CCCAGC 1 cut(s) 491
HaeII RGCGCY 1 cut(s) 461
HaeIII GGCC 5 cut(s) 119, 155, 197, 474, 492
HapII CCGG 8 cut(s) 75, 129, 263, 292, 327, 475, 483, 626
HgaI GACGC 1 cut(s) 53
HhaI GCGC 1 cut(s) 460
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 1 cut(s) 377
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 2 cut(s) 112, 434
HpaII CCGG 8 cut(s) 75, 129, 263, 292, 327, 475, 483, 626
HphI GGTGA 3 cut(s) 103, 538, 602
Hpy188I TCNGA 3 cut(s) 241, 411, 439
Hpy188III TCNNGA 1 cut(s) 214
Hpy99I CGWCG 2 cut(s) 47, 245
HpyAV CCTTC 6 cut(s) 130, 581, 590, 626, 633, 658
HpyCH4III ACNGT 3 cut(s) 99, 245, 276
HpyCH4IV ACGT 1 cut(s) 513
HpyCH4V TGCA 2 cut(s) 228, 334
HpyF10VI GCNNNNNNNGC 7 cut(s) 194, 532, 541, 550, 559, 568, 609
HpySE526I ACGT 1 cut(s) 513
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 1 cut(s) 377
HspAI GCGC 1 cut(s) 458
KroI GCCGGC 1 cut(s) 326
KroNI GCCGGC 1 cut(s) 328
Kzo9I GATC 4 cut(s) 80, 210, 222, 343
LmnI GCTCC 3 cut(s) 404, 412, 523
Lsp1109I GCAGC 1 cut(s) 541
LweI GCATC 2 cut(s) 237, 327
MaeI CTAG 2 cut(s) 26, 387
MaeII ACGT 1 cut(s) 513
MalI GATC 4 cut(s) 82, 212, 224, 345
MbiI CCGCTC 2 cut(s) 505, 526
MboI GATC 4 cut(s) 80, 210, 222, 343
MboII GAAGA 7 cut(s) 350, 406, 409, 641, 648, 655, 658
MhlI GDGCHC 3 cut(s) 157, 409, 626
MluCI AATT 1 cut(s) 692
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 4 cut(s) 229, 264, 462, 586
MreI CGCCGGCG 1 cut(s) 326
MroNI GCCGGC 1 cut(s) 326
MseI TTAA 2 cut(s) 171, 700
MspA1I CMGCKG 1 cut(s) 532
MspI CCGG 8 cut(s) 75, 129, 263, 292, 327, 475, 483, 626
MspR9I CCNGG 7 cut(s) 7, 89, 130, 263, 483, 484, 626
MvaI CCWGG 2 cut(s) 7, 89
MwoI GCNNNNNNNGC 7 cut(s) 194, 532, 541, 550, 559, 568, 609
NaeI GCCGGC 1 cut(s) 328
NciI CCSGG 5 cut(s) 130, 263, 483, 484, 626
NdeII GATC 4 cut(s) 80, 210, 222, 343
NgoMIV GCCGGC 1 cut(s) 326
NlaIII CATG 1 cut(s) 377
NlaIV GGNNCC 6 cut(s) 11, 127, 133, 154, 155, 473
NmeAIII GCCGAG 2 cut(s) 44, 518
NspI RCATGY 1 cut(s) 377
PceI AGGCCT 1 cut(s) 119
PciI ACATGT 1 cut(s) 373
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PdiI GCCGGC 1 cut(s) 328
PfeI GAWTC 1 cut(s) 434
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 5 cut(s) 504, 528, 531, 534, 602
PleI GAGTC 1 cut(s) 120
PmaCI CACGTG 1 cut(s) 514
PmlI CACGTG 1 cut(s) 514
PpsI GAGTC 1 cut(s) 120
Ppu21I YACGTR 1 cut(s) 514
PpuMI RGGWCCY 1 cut(s) 132
PscI ACATGT 1 cut(s) 373
Psp124BI GAGCTC 1 cut(s) 409
Psp5II RGGWCCY 1 cut(s) 132
Psp6I CCWGG 2 cut(s) 5, 87
PspCI CACGTG 1 cut(s) 514
PspFI CCCAGC 1 cut(s) 487
PspGI CCWGG 2 cut(s) 5, 87
PspN4I GGNNCC 6 cut(s) 11, 127, 133, 154, 155, 473
PspOMI GGGCCC 1 cut(s) 153
PspPI GGNCC 7 cut(s) 9, 132, 153, 154, 196, 472, 490
PspPPI RGGWCCY 1 cut(s) 132
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
SacI GAGCTC 1 cut(s) 409
SaqAI TTAA 2 cut(s) 171, 700
SatI GCNGC 5 cut(s) 503, 527, 530, 533, 601
Sau3AI GATC 4 cut(s) 80, 210, 222, 343
Sau96I GGNCC 7 cut(s) 9, 132, 153, 154, 196, 472, 490
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 7 cut(s) 7, 89, 130, 263, 483, 484, 626
SduI GDGCHC 3 cut(s) 157, 409, 626
SfaNI GCATC 2 cut(s) 237, 327
SgrAI CRCCGGYG 1 cut(s) 326
SinI GGWCC 2 cut(s) 9, 132
SmaI CCCGGG 1 cut(s) 484
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 1 cut(s) 692
SseBI AGGCCT 1 cut(s) 119
SsiI CCGC 5 cut(s) 503, 526, 532, 535, 600
SspMI CTAG 2 cut(s) 26, 387
SstI GAGCTC 1 cut(s) 409
StuI AGGCCT 1 cut(s) 119
StyD4I CCNGG 7 cut(s) 5, 87, 128, 261, 481, 482, 624
TaaI ACNGT 3 cut(s) 99, 245, 276
TaiI ACGT 1 cut(s) 516
TaqI TCGA 3 cut(s) 79, 213, 279
TasI AATT 1 cut(s) 692
TauI GCSGC 4 cut(s) 505, 529, 535, 603
TfiI GAWTC 1 cut(s) 434
Tru1I TTAA 2 cut(s) 171, 700
Tru9I TTAA 2 cut(s) 171, 700
TscAI CASTG 1 cut(s) 104
TseI GCWGC 1 cut(s) 529
TspDTI ATGAA 2 cut(s) 274, 464
TspGWI ACGGA 2 cut(s) 50, 417
TspMI CCCGGG 1 cut(s) 482
TspRI CASTG 1 cut(s) 104
VpaK11BI GGWCC 2 cut(s) 9, 132
XapI RAATTY 1 cut(s) 692
XceI RCATGY 1 cut(s) 377
XmaI CCCGGG 1 cut(s) 482
XspI CTAG 2 cut(s) 26, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.