RchiOBHm_Chr1g0360811
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000212
Physical Location & Seq
Forward (+)
52697497 .. 52699471
1975 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58575

Sequence Viewer

Length: 1464 bp
ATGGATGATCTAATCATCTCCCCTTCTTCGTCTTCTTCCTTGGTTTCTCTCCCACAAGAACCAACTCTCCAACAGAGGCTGCAGTTCATACTCCAAAGCCAGCCGGAGTTGTGGTCTTACGCCATTTTCTGGCAGGCCTCAAACGACGTCGAAAATGGCCGTCTCCTTCTCGGTTGGGGAGACGGCCATTTTCAGTGCCCCAAGAACCCGTCACCCAACCACAACAACAACAACAGCAACAGCCTCTCGTCCTCGGGAGGAGCGCTGCACTCCGACAGAAGAAAAATCCTTAAGGGCATACAGTCCATCCTCAACGACAACAACCCGGAGCTCGACATGGACAACTTCATGGCCCTAAACGGCGATGTCTCGGACGCCGAGTGGTTCTATGTCTTGTCGTTGACTCGATCTTTCGCCGTCGGGGACGGCTCTGTTCCCGGCAAGGCCTTCGGCTCCGGGACCTCAATCTGGCTGAGCGGGGCCCACGAGCTTCAGTTCAACAACAACTGCGAGAGGGCCAAAGAGGCCCAAATCCACGGGATCGAGACCTTGATCTGCATCCCAACTTCCGACGGTGTTCTTGAAATGGGTTCCTCCGGTTTGATCAGAGAGAACTGGGGGTTGATCCAGCAAGCCAAGTCGATGTTCGGGTCGGATCAGCCCGACCCGGAAACAAGACCGCTCGAGTTCATCAACCGGAACTTCTCCTTCGCCGACATCGGCATCATTGCCGGCGTGCAGGAAGAGGATCACAGCTCGTACAATGACGACAAGAAACATGTTTTTGGTTCTAGCAAGAAGAAGAACGGAGCTCCGAACCCAAACCCGGACTTCGCAGATTCCGACTGCCAGATGAAAAGAGCGCCGAAGAAACGGGGCCGAAAACCCGGGCTGGGCCGAGACACGCCGCTGAACCACGTGGAGGCCGAGCGGCAGCGGCGGGAGAAGCTCAACCACCGGTTCTACGCGCTACGCGCGGTGGTGCCCAACGTGTCGAGAATGGACAAGGCGTCGCTGCTGTCCGACGCCGTGTCGTACATCAACGACCTGAAGGCCAAGGTGGACGAGCTGGAGTCGAAGCTGCAGAGGGAGTCAAAGAAAGTCAAAGTGGAAATGGCGGACAACCAGGACAACCAGAGCACCACCACCACCGCCTCCGTGGAGCAAACACAAACAGTAAGGCCTGATATCAACAACACCAACAACGGGTCGGCTCTCGAGATTGAGGTGAAGATAGTGGGCACGGACGCCATGATTAGGGTGCAGTCGGAGAATGTGAACTACCCGTCTGCGAGGTTAATGACGGCGATGCGTGACTTAGAGTTCCGCATCCACCATGCGAGCTTGTCAAGCATCAATGATCTTATGCTCCAAGATATTGTGGTGAAGGTTCCTGATAATATGAGAAGCGAAGAAGGTCTCAAAGCTGCTCTACTCGGAATATTAGATCAGAACCAAGCTTAA

Protein Analysis

487

Amino Acids

53.99

Weight (kDa)

5.49

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 23 - 216 1.3e-48 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 305 - 351 9e-12 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 982
AccB7I CCANNNNNTGG 1 cut(s) 129
AccBSI CCGCTC 3 cut(s) 477, 682, 931
AccII CGCG 3 cut(s) 968, 975, 977
AclWI GGATC 4 cut(s) 548, 619, 663, 756
AcoI YGGCCR 2 cut(s) 157, 184
AcuI CTGAAG 2 cut(s) 476, 1070
AcvI CACGTG 1 cut(s) 919
AcyI GRCGYC 5 cut(s) 147, 375, 1010, 1026, 1248
AfaI GTAC 2 cut(s) 761, 1037
AfeI AGCGCT 1 cut(s) 264
AfiI CCNNNNNNNGG 7 cut(s) 129, 468, 826, 893, 922, 1206, 1257
AflII CTTAAG 1 cut(s) 290
AflIII ACRYGT 2 cut(s) 778, 990
AgeI ACCGGT 1 cut(s) 957
AgsI TTSAA 2 cut(s) 499, 584
AhdI GACNNNNNGTC 2 cut(s) 1009, 1030
AjnI CCWGG 1 cut(s) 1125
AjuI GAANNNNNNNTTGG 2 cut(s) 629, 661
AloI GAACNNNNNNTCC 2 cut(s) 51, 83
Alw21I GWGCWC 3 cut(s) 333, 814, 1142
Alw26I GTCTC 6 cut(s) 167, 174, 373, 539, 894, 1424
AlwI GGATC 4 cut(s) 548, 619, 663, 756
AlwNI CAGNNNCTG 1 cut(s) 79
Ama87I CYCGRG 4 cut(s) 253, 683, 887, 1217
Aor51HI AGCGCT 1 cut(s) 264
ApaI GGGCCC 1 cut(s) 484
ApeKI GCWGC 6 cut(s) 79, 265, 934, 1015, 1081, 1427
AsiGI ACCGGT 1 cut(s) 957
AspLEI GCGC 4 cut(s) 265, 865, 970, 977
AspS9I GGNCC 8 cut(s) 352, 459, 480, 481, 516, 526, 877, 895
AsuC2I CCSGG 7 cut(s) 326, 438, 457, 668, 827, 888, 889
AsuHPI GGTGA 3 cut(s) 204, 1240, 1396
AvaI CYCGRG 4 cut(s) 253, 683, 887, 1217
AvaII GGWCC 1 cut(s) 459
BaeGI GKGCMC 4 cut(s) 200, 484, 987, 1244
BanI GGYRCC 1 cut(s) 982
BanII GRGCYC 3 cut(s) 333, 484, 814
BauI CACGAG 1 cut(s) 485
BbrPI CACGTG 1 cut(s) 919
BbsI GAAGAC 1 cut(s) 24
Bbv12I GWGCWC 3 cut(s) 333, 814, 1142
BbvI GCAGC 6 cut(s) 66, 252, 946, 1002, 1068, 1414
BccI CCATC 1 cut(s) 314
BceAI ACGGC 7 cut(s) 144, 199, 376, 401, 442, 1013, 1320
BcgI CGANNNNNNTGC 2 cut(s) 430, 464
BciT130I CCWGG 1 cut(s) 1127
BclI TGATCA 1 cut(s) 603
BcnI CCSGG 7 cut(s) 326, 438, 457, 668, 827, 888, 889
BcoDI GTCTC 6 cut(s) 167, 174, 373, 539, 894, 1424
BfaI CTAG 1 cut(s) 792
BfmI CTRYAG 2 cut(s) 80, 1082
BfoI RGCGCY 2 cut(s) 266, 866
BfrI CTTAAG 1 cut(s) 290
BglI GCCNNNNNGGC 1 cut(s) 524
BisI GCNGC 9 cut(s) 80, 266, 908, 932, 935, 938, 1016, 1082, 1428
BlpI GCTNAGC 1 cut(s) 473
BlsI GCNGC 9 cut(s) 81, 267, 909, 933, 936, 939, 1017, 1083, 1429
Bme1390I CCNGG 8 cut(s) 326, 438, 457, 668, 827, 888, 889, 1127
Bme18I GGWCC 1 cut(s) 459
BmeRI GACNNNNNGTC 2 cut(s) 1009, 1030
BmeT110I CYCGRG 4 cut(s) 253, 683, 887, 1217
BmgT120I GGNCC 8 cut(s) 352, 459, 480, 481, 516, 526, 877, 895
BmiI GGNNCC 8 cut(s) 454, 460, 481, 482, 592, 878, 984, 1392
BmrFI CCNGG 8 cut(s) 326, 438, 457, 668, 827, 888, 889, 1127
BmrI ACTGGG 1 cut(s) 625
BmsI GCATC 5 cut(s) 567, 732, 1299, 1338, 1362
BmuI ACTGGG 1 cut(s) 625
BpiI GAAGAC 1 cut(s) 24
BpmI CTGGAG 1 cut(s) 1091
Bpu1102I GCTNAGC 1 cut(s) 473
BpuMI CCSGG 7 cut(s) 326, 438, 457, 668, 827, 888, 889
BsaAI YACGTR 1 cut(s) 919
BsaBI GATNNNNATC 1 cut(s) 557
BsaHI GRCGYC 5 cut(s) 147, 375, 1010, 1026, 1248
BsaI GGTCTC 2 cut(s) 539, 1424
BsaJI CCNNGG 6 cut(s) 39, 252, 535, 887, 1056, 1158
BsaWI WCCGGW 3 cut(s) 596, 696, 957
BsaXI ACNNNNNCTCC 4 cut(s) 51, 81, 98, 128
Bsc4I CCNNNNNNNGG 7 cut(s) 129, 468, 826, 893, 922, 1206, 1257
Bse118I RCCGGY 2 cut(s) 731, 957
Bse1I ACTGG 1 cut(s) 620
Bse3DI GCAATG 1 cut(s) 726
Bse8I GATNNNNATC 1 cut(s) 557
BseBI CCWGG 1 cut(s) 1127
BseDI CCNNGG 6 cut(s) 39, 252, 535, 887, 1056, 1158
BseGI GGATG 4 cut(s) 10, 306, 558, 1329
BseJI GATNNNNATC 1 cut(s) 557
BseLI CCNNNNNNNGG 7 cut(s) 129, 468, 826, 893, 922, 1206, 1257
BseMI GCAATG 1 cut(s) 726
BseMII CTCAG 1 cut(s) 464
BseNI ACTGG 1 cut(s) 620
BseRI GAGGAG 1 cut(s) 273
BseSI GKGCMC 4 cut(s) 200, 484, 987, 1244
BseXI GCAGC 6 cut(s) 66, 252, 946, 1002, 1068, 1414
BseYI CCCAGC 1 cut(s) 892
BsgI GTGCAG 3 cut(s) 251, 758, 1283
Bsh1236I CGCG 3 cut(s) 968, 975, 977
BshNI GGYRCC 1 cut(s) 982
BshTI ACCGGT 1 cut(s) 957
BsiHKAI GWGCWC 3 cut(s) 333, 814, 1142
BsiHKCI CYCGRG 4 cut(s) 253, 683, 887, 1217
BslFI GGGAC 2 cut(s) 437, 472
BslI CCNNNNNNNGG 7 cut(s) 129, 468, 826, 893, 922, 1206, 1257
BsmAI GTCTC 6 cut(s) 167, 174, 373, 539, 894, 1424
BsmBI CGTCTC 2 cut(s) 167, 174
BsmFI GGGAC 2 cut(s) 437, 472
Bso31I GGTCTC 2 cut(s) 539, 1424
BsoBI CYCGRG 4 cut(s) 253, 683, 887, 1217
Bsp120I GGGCCC 1 cut(s) 480
Bsp1286I GDGCHC 7 cut(s) 200, 333, 484, 814, 987, 1142, 1244
Bsp1720I GCTNAGC 1 cut(s) 473
BspCNI CTCAG 1 cut(s) 465
BspFNI CGCG 3 cut(s) 968, 975, 977
BspLI GGNNCC 8 cut(s) 454, 460, 481, 482, 592, 878, 984, 1392
BspMAI CTGCAG 2 cut(s) 84, 1086
BspPI GGATC 4 cut(s) 548, 619, 663, 756
BspT107I GGYRCC 1 cut(s) 982
BspTI CTTAAG 1 cut(s) 290
BspTNI GGTCTC 2 cut(s) 539, 1424
BsrBI CCGCTC 3 cut(s) 477, 682, 931
BsrDI GCAATG 1 cut(s) 726
BsrFI RCCGGY 2 cut(s) 731, 957
BsrI ACTGG 1 cut(s) 620
BssAI RCCGGY 2 cut(s) 731, 957
BssECI CCNNGG 6 cut(s) 39, 252, 535, 887, 1056, 1158
BssNI GRCGYC 5 cut(s) 147, 375, 1010, 1026, 1248
BssSI CACGAG 1 cut(s) 485
BssT1I CCWWGG 2 cut(s) 39, 1056
Bst2BI CACGAG 1 cut(s) 485
Bst2UI CCWGG 1 cut(s) 1127
Bst4CI ACNGT 3 cut(s) 303, 575, 1177
Bst6I CTCTTC 1 cut(s) 738
BstACI GRCGYC 5 cut(s) 147, 375, 1010, 1026, 1248
BstAFI CTTAAG 1 cut(s) 290
BstBAI YACGTR 1 cut(s) 919
BstC8I GCNNGC 6 cut(s) 101, 135, 633, 733, 737, 1342
BstDEI CTNAG 2 cut(s) 473, 1318
BstDSI CCRYGG 2 cut(s) 535, 1158
BstF5I GGATG 4 cut(s) 10, 306, 558, 1329
BstFNI CGCG 3 cut(s) 968, 975, 977
BstH2I RGCGCY 2 cut(s) 266, 866
BstHHI GCGC 4 cut(s) 265, 865, 970, 977
BstMAI GTCTC 6 cut(s) 167, 174, 373, 539, 894, 1424
BstMWI GCNNNNNNNGC 5 cut(s) 524, 937, 946, 974, 1350
BstNI CCWGG 1 cut(s) 1127
BstNSI RCATGY 1 cut(s) 782
BstSCI CCNGG 8 cut(s) 324, 436, 455, 666, 825, 886, 887, 1125
BstSFI CTRYAG 2 cut(s) 80, 1082
BstSLI GKGCMC 4 cut(s) 200, 484, 987, 1244
BstUI CGCG 3 cut(s) 968, 975, 977
BstV1I GCAGC 6 cut(s) 66, 252, 946, 1002, 1068, 1414
BstV2I GAAGAC 1 cut(s) 24
BtgI CCRYGG 2 cut(s) 535, 1158
BtgZI GCGATG 2 cut(s) 378, 1322
BtsCI GGATG 4 cut(s) 10, 306, 558, 1329
BtsIMutI CAGTG 1 cut(s) 200
Cac8I GCNNGC 6 cut(s) 101, 135, 633, 733, 737, 1342
CaiI CAGNNNCTG 1 cut(s) 79
CfoI GCGC 4 cut(s) 265, 865, 970, 977
Cfr10I RCCGGY 2 cut(s) 731, 957
Cfr13I GGNCC 8 cut(s) 352, 459, 480, 481, 516, 526, 877, 895
Cfr9I CCCGGG 1 cut(s) 887
CseI GACGC 4 cut(s) 383, 999, 1034, 1256
Csp6I GTAC 2 cut(s) 760, 1036
CspAI ACCGGT 1 cut(s) 957
CviAII CATG 5 cut(s) 337, 349, 779, 1252, 1337
CviQI GTAC 2 cut(s) 760, 1036
DdeI CTNAG 2 cut(s) 473, 1318
DriI GACNNNNNGTC 2 cut(s) 1009, 1030
EaeI YGGCCR 2 cut(s) 157, 184
Eam1104I CTCTTC 1 cut(s) 738
Eam1105I GACNNNNNGTC 2 cut(s) 1009, 1030
EarI CTCTTC 1 cut(s) 738
EciI GGCGGA 1 cut(s) 1133
Ecl136II GAGCTC 2 cut(s) 331, 812
Eco130I CCWWGG 2 cut(s) 39, 1056
Eco147I AGGCCT 3 cut(s) 137, 446, 1183
Eco24I GRGCYC 3 cut(s) 333, 484, 814
Eco31I GGTCTC 2 cut(s) 539, 1424
Eco32I GATATC 1 cut(s) 1189
Eco47I GGWCC 1 cut(s) 459
Eco47III AGCGCT 1 cut(s) 264
Eco53kI GAGCTC 2 cut(s) 331, 812
Eco57I CTGAAG 2 cut(s) 476, 1070
Eco72I CACGTG 1 cut(s) 919
Eco88I CYCGRG 4 cut(s) 253, 683, 887, 1217
EcoICRI GAGCTC 2 cut(s) 331, 812
EcoO109I RGGNCCY 2 cut(s) 459, 480
EcoRII CCWGG 1 cut(s) 1125
EcoRV GATATC 1 cut(s) 1189
EcoT14I CCWWGG 2 cut(s) 39, 1056
EcoT38I GRGCYC 3 cut(s) 333, 484, 814
ErhI CCWWGG 2 cut(s) 39, 1056
Esp3I CGTCTC 2 cut(s) 167, 174
FaeI CATG 5 cut(s) 340, 352, 782, 1255, 1340
FaqI GGGAC 2 cut(s) 437, 472
FatI CATG 5 cut(s) 336, 348, 778, 1251, 1336
FauI CCCGC 2 cut(s) 470, 933
FbaI TGATCA 1 cut(s) 603
Fnu4HI GCNGC 9 cut(s) 80, 266, 908, 932, 935, 938, 1016, 1082, 1428
FokI GGATG 4 cut(s) 17, 293, 545, 1316
FriOI GRGCYC 3 cut(s) 333, 484, 814
Fsp4HI GCNGC 9 cut(s) 80, 266, 908, 932, 935, 938, 1016, 1082, 1428
FspBI CTAG 1 cut(s) 792
GlaI GCGC 4 cut(s) 264, 864, 969, 976
GluI GCNGC 9 cut(s) 80, 266, 908, 932, 935, 938, 1016, 1082, 1428
GsaI CCCAGC 1 cut(s) 896
GsuI CTGGAG 1 cut(s) 1091
HaeII RGCGCY 2 cut(s) 266, 866
HgaI GACGC 4 cut(s) 383, 999, 1034, 1256
HhaI GCGC 4 cut(s) 265, 865, 970, 977
Hin1I GRCGYC 5 cut(s) 147, 375, 1010, 1026, 1248
Hin1II CATG 5 cut(s) 340, 352, 782, 1255, 1340
Hin6I GCGC 4 cut(s) 263, 863, 968, 975
HinP1I GCGC 4 cut(s) 263, 863, 968, 975
HincII GTYRAC 1 cut(s) 402
HindII GTYRAC 1 cut(s) 402
HindIII AAGCTT 1 cut(s) 1458
HinfI GANTC 4 cut(s) 403, 839, 1073, 1091
HphI GGTGA 3 cut(s) 204, 1240, 1396
Hpy166II GTNNAC 3 cut(s) 402, 1063, 1279
Hpy188III TCNNGA 7 cut(s) 255, 544, 581, 996, 1217, 1219, 1394
Hpy8I GTNNAC 3 cut(s) 402, 1063, 1279
Hpy99I CGWCG 6 cut(s) 149, 152, 422, 575, 1015, 1028
HpyAV CCTTC 7 cut(s) 33, 176, 457, 718, 1045, 1381, 1409
HpyCH4III ACNGT 3 cut(s) 303, 575, 1177
HpyCH4IV ACGT 3 cut(s) 147, 918, 990
HpyCH4V TGCA 6 cut(s) 82, 268, 558, 739, 1084, 1264
HpyF10VI GCNNNNNNNGC 5 cut(s) 524, 937, 946, 974, 1350
HpyF3I CTNAG 2 cut(s) 473, 1318
HpySE526I ACGT 3 cut(s) 147, 918, 990
Hsp92I GRCGYC 5 cut(s) 147, 375, 1010, 1026, 1248
Hsp92II CATG 5 cut(s) 340, 352, 782, 1255, 1340
HspAI GCGC 4 cut(s) 263, 863, 968, 975
KroI GCCGGC 1 cut(s) 731
KroNI GCCGGC 1 cut(s) 733
Ksp22I TGATCA 1 cut(s) 603
LmnI GCTCC 7 cut(s) 260, 328, 458, 809, 817, 1162, 1374
Lsp1109I GCAGC 6 cut(s) 66, 252, 946, 1002, 1068, 1414
LweI GCATC 5 cut(s) 567, 732, 1299, 1338, 1362
MaeI CTAG 1 cut(s) 792
MaeII ACGT 3 cut(s) 147, 918, 990
MaeIII GTNAC 2 cut(s) 210, 1313
MbiI CCGCTC 3 cut(s) 477, 682, 931
MhlI GDGCHC 7 cut(s) 200, 333, 484, 814, 987, 1142, 1244
MlyI GAGTC 3 cut(s) 397, 1082, 1100
MmeI TCCRAC 7 cut(s) 94, 297, 594, 633, 867, 1047, 1248
MroNI GCCGGC 1 cut(s) 731
MseI TTAA 3 cut(s) 291, 1298, 1462
MspA1I CMGCKG 2 cut(s) 910, 937
MspCI CTTAAG 1 cut(s) 290
MspR9I CCNGG 8 cut(s) 326, 438, 457, 668, 827, 888, 889, 1127
MvaI CCWGG 1 cut(s) 1127
MvnI CGCG 3 cut(s) 968, 975, 977
MwoI GCNNNNNNNGC 5 cut(s) 524, 937, 946, 974, 1350
NaeI GCCGGC 1 cut(s) 733
NciI CCSGG 7 cut(s) 326, 438, 457, 668, 827, 888, 889
NgoMIV GCCGGC 1 cut(s) 731
NlaIII CATG 5 cut(s) 340, 352, 782, 1255, 1340
NlaIV GGNNCC 8 cut(s) 454, 460, 481, 482, 592, 878, 984, 1392
NmeAIII GCCGAG 3 cut(s) 403, 923, 952
NmuCI GTSAC 2 cut(s) 210, 1313
NspI RCATGY 1 cut(s) 782
PaeR7I CTCGAG 2 cut(s) 683, 1217
PceI AGGCCT 3 cut(s) 137, 446, 1183
PciI ACATGT 1 cut(s) 778
PcsI WCGNNNNNNNCGW 2 cut(s) 840, 924
PdiI GCCGGC 1 cut(s) 733
PfeI GAWTC 1 cut(s) 839
PflMI CCANNNNNTGG 1 cut(s) 129
PfoI TCCNGGA 1 cut(s) 455
PinAI ACCGGT 1 cut(s) 957
PkrI GCNGC 9 cut(s) 81, 267, 909, 933, 936, 939, 1017, 1083, 1429
PleI GAGTC 3 cut(s) 397, 1081, 1099
PmaCI CACGTG 1 cut(s) 919
PmlI CACGTG 1 cut(s) 919
PpsI GAGTC 3 cut(s) 397, 1081, 1099
Ppu21I YACGTR 1 cut(s) 919
PpuMI RGGWCCY 1 cut(s) 459
PscI ACATGT 1 cut(s) 778
Psp124BI GAGCTC 2 cut(s) 333, 814
Psp5II RGGWCCY 1 cut(s) 459
Psp6I CCWGG 1 cut(s) 1125
PspCI CACGTG 1 cut(s) 919
PspFI CCCAGC 1 cut(s) 892
PspGI CCWGG 1 cut(s) 1125
PspN4I GGNNCC 8 cut(s) 454, 460, 481, 482, 592, 878, 984, 1392
PspOMI GGGCCC 1 cut(s) 480
PspPI GGNCC 8 cut(s) 352, 459, 480, 481, 516, 526, 877, 895
PspPPI RGGWCCY 1 cut(s) 459
PspXI VCTCGAGB 1 cut(s) 683
PstI CTGCAG 2 cut(s) 84, 1086
PstNI CAGNNNCTG 1 cut(s) 79
RsaI GTAC 2 cut(s) 761, 1037
RsaNI GTAC 2 cut(s) 760, 1036
SacI GAGCTC 2 cut(s) 333, 814
SaqAI TTAA 3 cut(s) 291, 1298, 1462
SatI GCNGC 9 cut(s) 80, 266, 908, 932, 935, 938, 1016, 1082, 1428
Sau96I GGNCC 8 cut(s) 352, 459, 480, 481, 516, 526, 877, 895
SchI GAGTC 3 cut(s) 397, 1082, 1100
ScrFI CCNGG 8 cut(s) 326, 438, 457, 668, 827, 888, 889, 1127
SduI GDGCHC 7 cut(s) 200, 333, 484, 814, 987, 1142, 1244
SfaNI GCATC 5 cut(s) 567, 732, 1299, 1338, 1362
SfcI CTRYAG 2 cut(s) 80, 1082
SfiI GGCCNNNNNGGCC 1 cut(s) 524
Sfr274I CTCGAG 2 cut(s) 683, 1217
SinI GGWCC 1 cut(s) 459
SlaI CTCGAG 2 cut(s) 683, 1217
SmaI CCCGGG 1 cut(s) 889
SmlI CTYRAG 3 cut(s) 290, 683, 1217
SmoI CTYRAG 3 cut(s) 290, 683, 1217
SseBI AGGCCT 3 cut(s) 137, 446, 1183
SspI AATATT 1 cut(s) 1443
SspMI CTAG 1 cut(s) 792
SstI GAGCTC 2 cut(s) 333, 814
StuI AGGCCT 3 cut(s) 137, 446, 1183
StyD4I CCNGG 8 cut(s) 324, 436, 455, 666, 825, 886, 887, 1125
StyI CCWWGG 2 cut(s) 39, 1056
TaaI ACNGT 3 cut(s) 303, 575, 1177
TaiI ACGT 3 cut(s) 150, 921, 993
TaqI TCGA 9 cut(s) 150, 333, 406, 543, 641, 684, 995, 1076, 1218
TauI GCSGC 3 cut(s) 910, 934, 940
TfiI GAWTC 1 cut(s) 839
Tru1I TTAA 3 cut(s) 291, 1298, 1462
Tru9I TTAA 3 cut(s) 291, 1298, 1462
TscAI CASTG 1 cut(s) 200
TseFI GTSAC 2 cut(s) 210, 1313
TseI GCWGC 6 cut(s) 79, 265, 934, 1015, 1081, 1427
Tsp45I GTSAC 2 cut(s) 210, 1313
TspDTI ATGAA 4 cut(s) 76, 337, 679, 869
TspGWI ACGGA 3 cut(s) 822, 1147, 1259
TspMI CCCGGG 1 cut(s) 887
TspRI CASTG 1 cut(s) 200
Van91I CCANNNNNTGG 1 cut(s) 129
Vha464I CTTAAG 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 459
XceI RCATGY 1 cut(s) 782
XcmI CCANNNNNNNNNTGG 1 cut(s) 1156
XhoI CTCGAG 2 cut(s) 683, 1217
XmaI CCCGGG 1 cut(s) 887
XspI CTAG 1 cut(s) 792
ZraI GACGTC 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.