Rh1AG293700
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000212
Physical Location & Seq
Forward (+)
52431140 .. 52433571
2432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG293700.1

Sequence Viewer

Length: 1452 bp
ATGGATGATCTAATCATCTCCCCTTCTTCGTCTTCTTCCTTGGTTTCTCTCCCACAAGAACCAACTCTCCAACAGAGGCTGCAGTTCATACTCCAAAGCCAGCCGGAGTTGTGGTCTTACGCCATTTTCTGGCAGGCCTCAAACGACGTCGAAAATGGCCGTCTCCTTCTCGGTTGGGGAGACGGCCATTTTCAGTGCCCCAAGAACCCGTCACCCAACCACAACAACAACAGCCTCTCGTCCTCGGGAGGAGCGCTACACTCCGACAGAAGAAAAATCCTTAAGGGCATACAGTCCATCCTCAACGACAACAACCCGGAGCTCGACATGGACAACTTCATGGCCCTAAACGGCGATGTCTCCGACGCCGAGTGGTTCTATGTCTTGTCGTTGACTCGATCTTTCGCCGTCGCAGACGGCTCTGTTCCCGGCAAGGCCTTCGGCTCCGGGACCTCAATCTGGCTGAGCGGGGCCCACGAGCTTCAGTTCAACAACTGCGAGAGGGCCAAAGAGGCCCAAATCCACGGGATCGAGACCTTGATCTGCATCCCAACTTCCGACGGTGTTCTTGAAATGGGTTCCTCCGGTTTGATCAGAGAGAACTGGGGTTTGATCCAGCAAGCCAAGTCGATGTTCGGGTCGGATCAGCCCGACCCGGAAACAAGACCGCTCGAGTTCATCAACCGGAACTTCTCCTTCGCCGACATCGGCATCATCGCCGGCGTGCAGGAAGAGGATCACAGCTCGTACAATGACGACAAGAAACATGTTTTTGGTTCTAGCAAGAAGAAGAACGGAGCTCCGAACCCAAACCCGGACTTCGCAGATTCCGACTGCCAGATGAAAAGAGCGCCGAAGAAACGGGGCCGGAAACCCGGGCTGGGCCGAGACACGCCGCTGAACCACGTGGAGGCGGAGCGGCAGCGGCGGGAGAAGCTCAACCACCGGTTCTACGCGCTACGCGCGGTGGTGCCGAACGTGTCGAGAATGGACAAGGCGTCACTGCTGTCCGACGCCGTGTCGTACATCAACGACCTGAAGGCCAAGGTGGACGAACTGGAGTCGAAGCTGCAGAGGGAGTCAAAGAAAGTCAAAGTGGAAATGGCGGACAACCAGGACAACCAGAGCACCACCACCACCGCCTCCGTGGAGCAAACACAAACAATAAGGCCTGATATCAACAACACCAACAACGGGTCGGCTCTCGAGATTGAGGTGAAGATAGTGGGCACGGACGCCATGATTAGGGTGCAGTCAGAGAATGTGAACTACCCATCTGCGAGGTTAATGACGGCGATGCGTGACTTAGAGTTCCGCATCCACCATGCGAGCTTGTCAAGCATCAATGATCTTATGCTCCAAGATATTGTGGTGAAGGTTCCTGATAATATGAGAAGCGAAGAAGGTCTCAAAGCTGCTCTACTCGGAATATTAGATCAGAACCAAGCTTAA

Protein Analysis

483

Amino Acids

53.59

Weight (kDa)

5.49

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 23 - 212 1.1e-48 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 301 - 347 8.9e-12 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 970
AccB7I CCANNNNNTGG 1 cut(s) 129
AccBSI CCGCTC 3 cut(s) 468, 670, 919
AccII CGCG 3 cut(s) 956, 963, 965
AclWI GGATC 4 cut(s) 536, 607, 651, 744
AcoI YGGCCR 2 cut(s) 157, 184
AcuI CTGAAG 2 cut(s) 467, 1058
AcvI CACGTG 1 cut(s) 907
AcyI GRCGYC 5 cut(s) 147, 366, 998, 1014, 1236
AfaI GTAC 2 cut(s) 749, 1025
AfeI AGCGCT 1 cut(s) 255
AfiI CCNNNNNNNGG 7 cut(s) 129, 459, 814, 881, 910, 1194, 1245
AflII CTTAAG 1 cut(s) 281
AflIII ACRYGT 2 cut(s) 766, 978
AgeI ACCGGT 1 cut(s) 945
AgsI TTSAA 2 cut(s) 490, 572
AhdI GACNNNNNGTC 2 cut(s) 997, 1018
AjnI CCWGG 1 cut(s) 1113
AjuI GAANNNNNNNTTGG 2 cut(s) 617, 649
AloI GAACNNNNNNTCC 2 cut(s) 51, 83
AluBI AGCT 9 cut(s) 322, 481, 744, 800, 937, 1069, 1332, 1415, 1448
AluI AGCT 9 cut(s) 322, 481, 744, 800, 937, 1069, 1332, 1415, 1448
Alw21I GWGCWC 3 cut(s) 324, 802, 1130
Alw26I GTCTC 6 cut(s) 167, 174, 364, 527, 882, 1412
AlwI GGATC 4 cut(s) 536, 607, 651, 744
AlwNI CAGNNNCTG 1 cut(s) 79
Ama87I CYCGRG 4 cut(s) 244, 671, 875, 1205
Aor51HI AGCGCT 1 cut(s) 255
ApaI GGGCCC 1 cut(s) 475
ApeKI GCWGC 4 cut(s) 79, 922, 1069, 1415
AsiGI ACCGGT 1 cut(s) 945
AspLEI GCGC 4 cut(s) 256, 853, 958, 965
AspS9I GGNCC 8 cut(s) 343, 450, 471, 472, 504, 514, 865, 883
AsuC2I CCSGG 7 cut(s) 317, 429, 448, 656, 815, 876, 877
AsuHPI GGTGA 3 cut(s) 204, 1228, 1384
AvaI CYCGRG 4 cut(s) 244, 671, 875, 1205
AvaII GGWCC 1 cut(s) 450
BaeGI GKGCMC 3 cut(s) 200, 475, 1232
BanI GGYRCC 1 cut(s) 970
BanII GRGCYC 3 cut(s) 324, 475, 802
BauI CACGAG 1 cut(s) 476
BbrPI CACGTG 1 cut(s) 907
BbsI GAAGAC 1 cut(s) 24
Bbv12I GWGCWC 3 cut(s) 324, 802, 1130
BbvI GCAGC 4 cut(s) 66, 934, 1056, 1402
BccI CCATC 2 cut(s) 305, 1282
BceAI ACGGC 7 cut(s) 144, 199, 367, 392, 433, 1001, 1308
BcgI CGANNNNNNTGC 2 cut(s) 421, 455
BciT130I CCWGG 1 cut(s) 1115
BclI TGATCA 1 cut(s) 591
BcnI CCSGG 7 cut(s) 317, 429, 448, 656, 815, 876, 877
BcoDI GTCTC 6 cut(s) 167, 174, 364, 527, 882, 1412
BfaI CTAG 1 cut(s) 780
BfmI CTRYAG 2 cut(s) 80, 1070
BfoI RGCGCY 2 cut(s) 257, 854
BfrI CTTAAG 1 cut(s) 281
BglI GCCNNNNNGGC 1 cut(s) 512
BisI GCNGC 7 cut(s) 80, 896, 920, 923, 926, 1070, 1416
BlpI GCTNAGC 1 cut(s) 464
BlsI GCNGC 7 cut(s) 81, 897, 921, 924, 927, 1071, 1417
Bme1390I CCNGG 8 cut(s) 317, 429, 448, 656, 815, 876, 877, 1115
Bme18I GGWCC 1 cut(s) 450
BmeRI GACNNNNNGTC 2 cut(s) 997, 1018
BmeT110I CYCGRG 4 cut(s) 244, 671, 875, 1205
BmgT120I GGNCC 8 cut(s) 343, 450, 471, 472, 504, 514, 865, 883
BmiI GGNNCC 8 cut(s) 445, 451, 472, 473, 580, 866, 972, 1380
BmrFI CCNGG 8 cut(s) 317, 429, 448, 656, 815, 876, 877, 1115
BmrI ACTGGG 1 cut(s) 613
BmsI GCATC 5 cut(s) 555, 720, 1287, 1326, 1350
BmuI ACTGGG 1 cut(s) 613
BpiI GAAGAC 1 cut(s) 24
BpmI CTGGAG 1 cut(s) 1079
Bpu1102I GCTNAGC 1 cut(s) 464
BpuMI CCSGG 7 cut(s) 317, 429, 448, 656, 815, 876, 877
BsaAI YACGTR 1 cut(s) 907
BsaBI GATNNNNATC 1 cut(s) 545
BsaHI GRCGYC 5 cut(s) 147, 366, 998, 1014, 1236
BsaI GGTCTC 2 cut(s) 527, 1412
BsaJI CCNNGG 6 cut(s) 39, 243, 523, 875, 1044, 1146
BsaWI WCCGGW 3 cut(s) 584, 684, 945
BsaXI ACNNNNNCTCC 4 cut(s) 51, 81, 98, 128
Bsc4I CCNNNNNNNGG 7 cut(s) 129, 459, 814, 881, 910, 1194, 1245
Bse118I RCCGGY 2 cut(s) 719, 945
Bse1I ACTGG 2 cut(s) 608, 1062
Bse8I GATNNNNATC 1 cut(s) 545
BseBI CCWGG 1 cut(s) 1115
BseDI CCNNGG 6 cut(s) 39, 243, 523, 875, 1044, 1146
BseGI GGATG 4 cut(s) 10, 297, 546, 1317
BseJI GATNNNNATC 1 cut(s) 545
BseLI CCNNNNNNNGG 7 cut(s) 129, 459, 814, 881, 910, 1194, 1245
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 2 cut(s) 608, 1062
BseRI GAGGAG 1 cut(s) 264
BseSI GKGCMC 3 cut(s) 200, 475, 1232
BseXI GCAGC 4 cut(s) 66, 934, 1056, 1402
BseYI CCCAGC 1 cut(s) 880
BsgI GTGCAG 2 cut(s) 746, 1271
Bsh1236I CGCG 3 cut(s) 956, 963, 965
BshNI GGYRCC 1 cut(s) 970
BshTI ACCGGT 1 cut(s) 945
BsiHKAI GWGCWC 3 cut(s) 324, 802, 1130
BsiHKCI CYCGRG 4 cut(s) 244, 671, 875, 1205
BslFI GGGAC 1 cut(s) 463
BslI CCNNNNNNNGG 7 cut(s) 129, 459, 814, 881, 910, 1194, 1245
BsmAI GTCTC 6 cut(s) 167, 174, 364, 527, 882, 1412
BsmBI CGTCTC 2 cut(s) 167, 174
BsmFI GGGAC 1 cut(s) 463
Bso31I GGTCTC 2 cut(s) 527, 1412
BsoBI CYCGRG 4 cut(s) 244, 671, 875, 1205
Bsp120I GGGCCC 1 cut(s) 471
Bsp1286I GDGCHC 6 cut(s) 200, 324, 475, 802, 1130, 1232
Bsp1720I GCTNAGC 1 cut(s) 464
BspCNI CTCAG 1 cut(s) 456
BspFNI CGCG 3 cut(s) 956, 963, 965
BspLI GGNNCC 8 cut(s) 445, 451, 472, 473, 580, 866, 972, 1380
BspMAI CTGCAG 2 cut(s) 84, 1074
BspPI GGATC 4 cut(s) 536, 607, 651, 744
BspT107I GGYRCC 1 cut(s) 970
BspTI CTTAAG 1 cut(s) 281
BspTNI GGTCTC 2 cut(s) 527, 1412
BsrBI CCGCTC 3 cut(s) 468, 670, 919
BsrFI RCCGGY 2 cut(s) 719, 945
BsrI ACTGG 2 cut(s) 608, 1062
BssAI RCCGGY 2 cut(s) 719, 945
BssECI CCNNGG 6 cut(s) 39, 243, 523, 875, 1044, 1146
BssNI GRCGYC 5 cut(s) 147, 366, 998, 1014, 1236
BssSI CACGAG 1 cut(s) 476
BssT1I CCWWGG 2 cut(s) 39, 1044
Bst2BI CACGAG 1 cut(s) 476
Bst2UI CCWGG 1 cut(s) 1115
Bst4CI ACNGT 2 cut(s) 294, 563
Bst6I CTCTTC 1 cut(s) 726
BstACI GRCGYC 5 cut(s) 147, 366, 998, 1014, 1236
BstAFI CTTAAG 1 cut(s) 281
BstBAI YACGTR 1 cut(s) 907
BstC8I GCNNGC 6 cut(s) 101, 135, 621, 721, 725, 1330
BstDEI CTNAG 2 cut(s) 464, 1306
BstDSI CCRYGG 2 cut(s) 523, 1146
BstF5I GGATG 4 cut(s) 10, 297, 546, 1317
BstFNI CGCG 3 cut(s) 956, 963, 965
BstH2I RGCGCY 2 cut(s) 257, 854
BstHHI GCGC 4 cut(s) 256, 853, 958, 965
BstMAI GTCTC 6 cut(s) 167, 174, 364, 527, 882, 1412
BstMWI GCNNNNNNNGC 5 cut(s) 512, 925, 934, 962, 1338
BstNI CCWGG 1 cut(s) 1115
BstNSI RCATGY 1 cut(s) 770
BstSCI CCNGG 8 cut(s) 315, 427, 446, 654, 813, 874, 875, 1113
BstSFI CTRYAG 2 cut(s) 80, 1070
BstSLI GKGCMC 3 cut(s) 200, 475, 1232
BstUI CGCG 3 cut(s) 956, 963, 965
BstV1I GCAGC 4 cut(s) 66, 934, 1056, 1402
BstV2I GAAGAC 1 cut(s) 24
BtgI CCRYGG 2 cut(s) 523, 1146
BtgZI GCGATG 3 cut(s) 369, 700, 1310
BtsCI GGATG 4 cut(s) 10, 297, 546, 1317
BtsI GCAGTG 1 cut(s) 1001
BtsIMutI CAGTG 2 cut(s) 200, 1001
Cac8I GCNNGC 6 cut(s) 101, 135, 621, 721, 725, 1330
CaiI CAGNNNCTG 1 cut(s) 79
CfoI GCGC 4 cut(s) 256, 853, 958, 965
Cfr10I RCCGGY 2 cut(s) 719, 945
Cfr13I GGNCC 8 cut(s) 343, 450, 471, 472, 504, 514, 865, 883
Cfr9I CCCGGG 1 cut(s) 875
CseI GACGC 4 cut(s) 374, 987, 1022, 1244
Csp6I GTAC 2 cut(s) 748, 1024
CspAI ACCGGT 1 cut(s) 945
CviAII CATG 5 cut(s) 328, 340, 767, 1240, 1325
CviQI GTAC 2 cut(s) 748, 1024
DdeI CTNAG 2 cut(s) 464, 1306
DriI GACNNNNNGTC 2 cut(s) 997, 1018
EaeI YGGCCR 2 cut(s) 157, 184
Eam1104I CTCTTC 1 cut(s) 726
Eam1105I GACNNNNNGTC 2 cut(s) 997, 1018
EarI CTCTTC 1 cut(s) 726
EciI GGCGGA 2 cut(s) 929, 1121
Ecl136II GAGCTC 2 cut(s) 322, 800
Eco130I CCWWGG 2 cut(s) 39, 1044
Eco147I AGGCCT 3 cut(s) 137, 437, 1171
Eco24I GRGCYC 3 cut(s) 324, 475, 802
Eco31I GGTCTC 2 cut(s) 527, 1412
Eco32I GATATC 1 cut(s) 1177
Eco47I GGWCC 1 cut(s) 450
Eco47III AGCGCT 1 cut(s) 255
Eco53kI GAGCTC 2 cut(s) 322, 800
Eco57I CTGAAG 2 cut(s) 467, 1058
Eco72I CACGTG 1 cut(s) 907
Eco88I CYCGRG 4 cut(s) 244, 671, 875, 1205
EcoICRI GAGCTC 2 cut(s) 322, 800
EcoO109I RGGNCCY 2 cut(s) 450, 471
EcoRII CCWGG 1 cut(s) 1113
EcoRV GATATC 1 cut(s) 1177
EcoT14I CCWWGG 2 cut(s) 39, 1044
EcoT38I GRGCYC 3 cut(s) 324, 475, 802
ErhI CCWWGG 2 cut(s) 39, 1044
Esp3I CGTCTC 2 cut(s) 167, 174
FaeI CATG 5 cut(s) 331, 343, 770, 1243, 1328
FaqI GGGAC 1 cut(s) 463
FatI CATG 5 cut(s) 327, 339, 766, 1239, 1324
FauI CCCGC 2 cut(s) 461, 921
FbaI TGATCA 1 cut(s) 591
Fnu4HI GCNGC 7 cut(s) 80, 896, 920, 923, 926, 1070, 1416
FokI GGATG 4 cut(s) 17, 284, 533, 1304
FriOI GRGCYC 3 cut(s) 324, 475, 802
Fsp4HI GCNGC 7 cut(s) 80, 896, 920, 923, 926, 1070, 1416
FspBI CTAG 1 cut(s) 780
GlaI GCGC 4 cut(s) 255, 852, 957, 964
GluI GCNGC 7 cut(s) 80, 896, 920, 923, 926, 1070, 1416
GsaI CCCAGC 1 cut(s) 884
GsuI CTGGAG 1 cut(s) 1079
HaeII RGCGCY 2 cut(s) 257, 854
HgaI GACGC 4 cut(s) 374, 987, 1022, 1244
HhaI GCGC 4 cut(s) 256, 853, 958, 965
Hin1I GRCGYC 5 cut(s) 147, 366, 998, 1014, 1236
Hin1II CATG 5 cut(s) 331, 343, 770, 1243, 1328
Hin6I GCGC 4 cut(s) 254, 851, 956, 963
HinP1I GCGC 4 cut(s) 254, 851, 956, 963
HincII GTYRAC 1 cut(s) 393
HindII GTYRAC 1 cut(s) 393
HindIII AAGCTT 1 cut(s) 1446
HinfI GANTC 4 cut(s) 394, 827, 1061, 1079
HphI GGTGA 3 cut(s) 204, 1228, 1384
Hpy166II GTNNAC 3 cut(s) 393, 1051, 1267
Hpy188III TCNNGA 7 cut(s) 246, 532, 569, 984, 1205, 1207, 1382
Hpy8I GTNNAC 3 cut(s) 393, 1051, 1267
Hpy99I CGWCG 6 cut(s) 149, 152, 368, 413, 563, 1016
HpyAV CCTTC 7 cut(s) 33, 176, 448, 706, 1033, 1369, 1397
HpyCH4III ACNGT 2 cut(s) 294, 563
HpyCH4IV ACGT 3 cut(s) 147, 906, 978
HpyCH4V TGCA 5 cut(s) 82, 546, 727, 1072, 1252
HpyF10VI GCNNNNNNNGC 5 cut(s) 512, 925, 934, 962, 1338
HpyF3I CTNAG 2 cut(s) 464, 1306
HpySE526I ACGT 3 cut(s) 147, 906, 978
Hsp92I GRCGYC 5 cut(s) 147, 366, 998, 1014, 1236
Hsp92II CATG 5 cut(s) 331, 343, 770, 1243, 1328
HspAI GCGC 4 cut(s) 254, 851, 956, 963
KroI GCCGGC 1 cut(s) 719
KroNI GCCGGC 1 cut(s) 721
Ksp22I TGATCA 1 cut(s) 591
LmnI GCTCC 8 cut(s) 251, 319, 449, 797, 805, 916, 1150, 1362
Lsp1109I GCAGC 4 cut(s) 66, 934, 1056, 1402
LweI GCATC 5 cut(s) 555, 720, 1287, 1326, 1350
MaeI CTAG 1 cut(s) 780
MaeII ACGT 3 cut(s) 147, 906, 978
MaeIII GTNAC 3 cut(s) 210, 999, 1301
MbiI CCGCTC 3 cut(s) 468, 670, 919
MhlI GDGCHC 6 cut(s) 200, 324, 475, 802, 1130, 1232
MlyI GAGTC 3 cut(s) 388, 1070, 1088
MmeI TCCRAC 7 cut(s) 94, 288, 387, 582, 621, 855, 1035
MreI CGCCGGCG 1 cut(s) 719
MroNI GCCGGC 1 cut(s) 719
MseI TTAA 3 cut(s) 282, 1286, 1450
MspA1I CMGCKG 2 cut(s) 898, 925
MspCI CTTAAG 1 cut(s) 281
MspR9I CCNGG 8 cut(s) 317, 429, 448, 656, 815, 876, 877, 1115
MvaI CCWGG 1 cut(s) 1115
MvnI CGCG 3 cut(s) 956, 963, 965
MwoI GCNNNNNNNGC 5 cut(s) 512, 925, 934, 962, 1338
NaeI GCCGGC 1 cut(s) 721
NciI CCSGG 7 cut(s) 317, 429, 448, 656, 815, 876, 877
NgoMIV GCCGGC 1 cut(s) 719
NlaIII CATG 5 cut(s) 331, 343, 770, 1243, 1328
NlaIV GGNNCC 8 cut(s) 445, 451, 472, 473, 580, 866, 972, 1380
NmeAIII GCCGAG 2 cut(s) 394, 911
NmuCI GTSAC 3 cut(s) 210, 999, 1301
NspI RCATGY 1 cut(s) 770
PaeR7I CTCGAG 2 cut(s) 671, 1205
PceI AGGCCT 3 cut(s) 137, 437, 1171
PciI ACATGT 1 cut(s) 766
PcsI WCGNNNNNNNCGW 1 cut(s) 828
PdiI GCCGGC 1 cut(s) 721
PfeI GAWTC 1 cut(s) 827
PflMI CCANNNNNTGG 1 cut(s) 129
PfoI TCCNGGA 1 cut(s) 446
PinAI ACCGGT 1 cut(s) 945
PkrI GCNGC 7 cut(s) 81, 897, 921, 924, 927, 1071, 1417
PleI GAGTC 3 cut(s) 388, 1069, 1087
PmaCI CACGTG 1 cut(s) 907
PmlI CACGTG 1 cut(s) 907
PpsI GAGTC 3 cut(s) 388, 1069, 1087
Ppu21I YACGTR 1 cut(s) 907
PpuMI RGGWCCY 1 cut(s) 450
PscI ACATGT 1 cut(s) 766
Psp124BI GAGCTC 2 cut(s) 324, 802
Psp5II RGGWCCY 1 cut(s) 450
Psp6I CCWGG 1 cut(s) 1113
PspCI CACGTG 1 cut(s) 907
PspFI CCCAGC 1 cut(s) 880
PspGI CCWGG 1 cut(s) 1113
PspN4I GGNNCC 8 cut(s) 445, 451, 472, 473, 580, 866, 972, 1380
PspOMI GGGCCC 1 cut(s) 471
PspPI GGNCC 8 cut(s) 343, 450, 471, 472, 504, 514, 865, 883
PspPPI RGGWCCY 1 cut(s) 450
PspXI VCTCGAGB 1 cut(s) 671
PstI CTGCAG 2 cut(s) 84, 1074
PstNI CAGNNNCTG 1 cut(s) 79
RsaI GTAC 2 cut(s) 749, 1025
RsaNI GTAC 2 cut(s) 748, 1024
SacI GAGCTC 2 cut(s) 324, 802
SaqAI TTAA 3 cut(s) 282, 1286, 1450
SatI GCNGC 7 cut(s) 80, 896, 920, 923, 926, 1070, 1416
Sau96I GGNCC 8 cut(s) 343, 450, 471, 472, 504, 514, 865, 883
SchI GAGTC 3 cut(s) 388, 1070, 1088
ScrFI CCNGG 8 cut(s) 317, 429, 448, 656, 815, 876, 877, 1115
SduI GDGCHC 6 cut(s) 200, 324, 475, 802, 1130, 1232
SfaNI GCATC 5 cut(s) 555, 720, 1287, 1326, 1350
SfcI CTRYAG 2 cut(s) 80, 1070
SfiI GGCCNNNNNGGCC 1 cut(s) 512
Sfr274I CTCGAG 2 cut(s) 671, 1205
SgrAI CRCCGGYG 1 cut(s) 719
SinI GGWCC 1 cut(s) 450
SlaI CTCGAG 2 cut(s) 671, 1205
SmaI CCCGGG 1 cut(s) 877
SmlI CTYRAG 3 cut(s) 281, 671, 1205
SmoI CTYRAG 3 cut(s) 281, 671, 1205
SseBI AGGCCT 3 cut(s) 137, 437, 1171
SspI AATATT 1 cut(s) 1431
SspMI CTAG 1 cut(s) 780
SstI GAGCTC 2 cut(s) 324, 802
StuI AGGCCT 3 cut(s) 137, 437, 1171
StyD4I CCNGG 8 cut(s) 315, 427, 446, 654, 813, 874, 875, 1113
StyI CCWWGG 2 cut(s) 39, 1044
TaaI ACNGT 2 cut(s) 294, 563
TaiI ACGT 3 cut(s) 150, 909, 981
TaqI TCGA 9 cut(s) 150, 324, 397, 531, 629, 672, 983, 1064, 1206
TauI GCSGC 3 cut(s) 898, 922, 928
TfiI GAWTC 1 cut(s) 827
Tru1I TTAA 3 cut(s) 282, 1286, 1450
Tru9I TTAA 3 cut(s) 282, 1286, 1450
TscAI CASTG 2 cut(s) 200, 1008
TseFI GTSAC 3 cut(s) 210, 999, 1301
TseI GCWGC 4 cut(s) 79, 922, 1069, 1415
Tsp45I GTSAC 3 cut(s) 210, 999, 1301
TspDTI ATGAA 4 cut(s) 76, 328, 667, 857
TspGWI ACGGA 3 cut(s) 810, 1135, 1247
TspMI CCCGGG 1 cut(s) 875
TspRI CASTG 2 cut(s) 200, 1008
Van91I CCANNNNNTGG 1 cut(s) 129
Vha464I CTTAAG 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 450
XceI RCATGY 1 cut(s) 770
XcmI CCANNNNNNNNNTGG 1 cut(s) 1144
XhoI CTCGAG 2 cut(s) 671, 1205
XmaI CCCGGG 1 cut(s) 875
XspI CTAG 1 cut(s) 780
ZraI GACGTC 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.