Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006343.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Reverse (-)

11095 .. 11981

Gene Structure 887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006343.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgatgggtggcttaaccaaaaaagaagggaaaatttcgcaaacagccttcagctccgggacctcaatctggctgagcagggtccacaagcttcagttcaacaactgcgagagagccaaagaggcccaaatccacgggatcgagaccttgatctgtatcccaacttccgacggtgttcttgaaatgggttcctccggtttgatcagagagaactgggggttgatccagcaagtcaagtcgttgttcgggtcagatcagcccaacccggaaacagaaccgctcgagttcatcaatctaaacttctccatttttgacatcggcatcattgtcggcgtgcaagaagaggatcacagctcgtacaatgacgacaagaaacatgtttttggttctagcaagaagaagaacggagcttcgaacccaaacccggacttcgcagattccgattgccagatgaaaagagcgccgaagaaacggggccggaaacccgggctgggcagagacacgccgctcaaccacttggaagcggagtggcaacggcgggagaagctcacctcacaagggcggcgttggaagcgagggagtagcccgaaagaaggaagaagaaagagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

203

Amino Acids

22.84

Weight (kDa)

9.59

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	280, 508
AciI	CCGC	5 cut(s)	278, 506, 524, 538, 562
AclWI	GGATC	3 cut(s)	146, 217, 354
AcsI	RAATTY	1 cut(s)	33
AcuI	CTGAAG	2 cut(s)	34, 77
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	5 cut(s)	69, 424, 491, 558, 593
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	100, 182
AluBI	AGCT	5 cut(s)	54, 91, 354, 410, 547
AluI	AGCT	5 cut(s)	54, 91, 354, 410, 547
Alw26I	GTCTC	2 cut(s)	137, 492
AlwI	GGATC	3 cut(s)	146, 217, 354
Ama87I	CYCGRG	2 cut(s)	281, 485
AoxI	GGCC	2 cut(s)	123, 475
ApoI	RAATTY	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	463
AspS9I	GGNCC	4 cut(s)	60, 82, 124, 475
AsuC2I	CCSGG	5 cut(s)	58, 266, 425, 486, 487
AsuHPI	GGTGA	1 cut(s)	541
AsuII	TTCGAA	1 cut(s)	413
AvaI	CYCGRG	2 cut(s)	281, 485
AvaII	GGWCC	2 cut(s)	60, 82
BarI	GAAGNNNNNNTAC	2 cut(s)	148, 180
BceAI	ACGGC	1 cut(s)	551
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BciVI	GTATCC	1 cut(s)	167
BclI	TGATCA	1 cut(s)	201
BcnI	CCSGG	5 cut(s)	58, 266, 425, 486, 487
BcoDI	GTCTC	2 cut(s)	137, 492
BfaI	CTAG	1 cut(s)	390
BfoI	RGCGCY	1 cut(s)	464
BfuI	GTATCC	1 cut(s)	167
BglI	GCCNNNNNGGC	1 cut(s)	122
BisI	GCNGC	2 cut(s)	506, 563
BlpI	GCTNAGC	1 cut(s)	74
BlsI	GCNGC	2 cut(s)	507, 564
Bme1390I	CCNGG	5 cut(s)	58, 266, 425, 486, 487
Bme18I	GGWCC	2 cut(s)	60, 82
BmeT110I	CYCGRG	2 cut(s)	281, 485
BmgT120I	GGNCC	4 cut(s)	60, 82, 124, 475
BmiI	GGNNCC	4 cut(s)	61, 83, 190, 476
BmrFI	CCNGG	5 cut(s)	58, 266, 425, 486, 487
BmrI	ACTGGG	1 cut(s)	223
BmsI	GCATC	1 cut(s)	330
BmuI	ACTGGG	1 cut(s)	223
Bpu1102I	GCTNAGC	1 cut(s)	74
Bpu14I	TTCGAA	1 cut(s)	413
BpuMI	CCSGG	5 cut(s)	58, 266, 425, 486, 487
BsaBI	GATNNNNATC	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	133, 485
BsaWI	WCCGGW	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	5 cut(s)	69, 424, 491, 558, 593
Bse1I	ACTGG	1 cut(s)	218
Bse8I	GATNNNNATC	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	133, 485
BseJI	GATNNNNATC	1 cut(s)	155
BseLI	CCNNNNNNNGG	5 cut(s)	69, 424, 491, 558, 593
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	218
BseYI	CCCAGC	1 cut(s)	490
BshFI	GGCC	2 cut(s)	125, 477
BsiHKCI	CYCGRG	2 cut(s)	281, 485
BsiSI	CCGG	6 cut(s)	57, 195, 266, 425, 478, 486
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	5 cut(s)	69, 424, 491, 558, 593
BsmAI	GTCTC	2 cut(s)	137, 492
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	125, 477
Bso31I	GGTCTC	1 cut(s)	137
BsoBI	CYCGRG	2 cut(s)	281, 485
Bsp119I	TTCGAA	1 cut(s)	413
Bsp143I	GATC	6 cut(s)	138, 150, 201, 222, 253, 346
Bsp1720I	GCTNAGC	1 cut(s)	74
BspACI	CCGC	5 cut(s)	278, 506, 524, 538, 562
BspANI	GGCC	2 cut(s)	125, 477
BspCNI	CTCAG	1 cut(s)	66
BspLI	GGNNCC	4 cut(s)	61, 83, 190, 476
BspPI	GGATC	3 cut(s)	146, 217, 354
BspT104I	TTCGAA	1 cut(s)	413
BspTNI	GGTCTC	1 cut(s)	137
BsrBI	CCGCTC	2 cut(s)	280, 508
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	133, 485
BssMI	GATC	6 cut(s)	138, 150, 201, 222, 253, 346
Bst4CI	ACNGT	1 cut(s)	173
Bst6I	CTCTTC	1 cut(s)	336
BstBI	TTCGAA	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	1 cut(s)	74
BstDSI	CCRYGG	1 cut(s)	133
BstH2I	RGCGCY	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	6 cut(s)	141, 153, 204, 225, 256, 349
BstMAI	GTCTC	2 cut(s)	137, 492
BstMBI	GATC	6 cut(s)	138, 150, 201, 222, 253, 346
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 544, 571
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	5 cut(s)	56, 264, 423, 484, 485
BsuI	GTATCC	1 cut(s)	167
BsuRI	GGCC	2 cut(s)	125, 477
BtgI	CCRYGG	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	335
CfoI	GCGC	1 cut(s)	463
Cfr13I	GGNCC	4 cut(s)	60, 82, 124, 475
Cfr9I	CCCGGG	1 cut(s)	485
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	1 cut(s)	377
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	6 cut(s)	140, 152, 203, 224, 255, 348
DpnII	GATC	6 cut(s)	138, 150, 201, 222, 253, 346
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	137
Eco47I	GGWCC	2 cut(s)	60, 82
Eco57I	CTGAAG	2 cut(s)	34, 77
Eco88I	CYCGRG	2 cut(s)	281, 485
EcoO109I	RGGNCCY	1 cut(s)	60
FaeI	CATG	1 cut(s)	380
FaiI	YATR	1 cut(s)	378
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	1 cut(s)	376
FauI	CCCGC	1 cut(s)	531
FbaI	TGATCA	1 cut(s)	201
Fnu4HI	GCNGC	2 cut(s)	506, 563
Fsp4HI	GCNGC	2 cut(s)	506, 563
FspBI	CTAG	1 cut(s)	390
GlaI	GCGC	1 cut(s)	462
GluI	GCNGC	2 cut(s)	506, 563
GsaI	CCCAGC	1 cut(s)	494
HaeII	RGCGCY	1 cut(s)	464
HaeIII	GGCC	2 cut(s)	125, 477
HapII	CCGG	6 cut(s)	57, 195, 266, 425, 478, 486
HhaI	GCGC	1 cut(s)	463
Hin1II	CATG	1 cut(s)	380
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	1 cut(s)	437
HpaII	CCGG	6 cut(s)	57, 195, 266, 425, 478, 486
HphI	GGTGA	1 cut(s)	541
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	4 cut(s)	169, 206, 253, 442
Hpy188III	TCNNGA	2 cut(s)	142, 179
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	3 cut(s)	20, 58, 587
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4V	TGCA	1 cut(s)	337
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 544, 571
HpyF3I	CTNAG	1 cut(s)	74
Hsp92II	CATG	1 cut(s)	380
HspAI	GCGC	1 cut(s)	461
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	6 cut(s)	138, 150, 201, 222, 253, 346
LmnI	GCTCC	2 cut(s)	59, 407
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	1 cut(s)	390
MalI	GATC	6 cut(s)	140, 152, 203, 224, 255, 348
MbiI	CCGCTC	2 cut(s)	280, 508
MboI	GATC	6 cut(s)	138, 150, 201, 222, 253, 346
MboII	GAAGA	6 cut(s)	353, 409, 412, 478, 609, 612
MluCI	AATT	1 cut(s)	33
MmeI	TCCRAC	2 cut(s)	192, 548
MnlI	CCTC	6 cut(s)	73, 115, 202, 337, 562, 569
MseI	TTAA	1 cut(s)	14
MspI	CCGG	6 cut(s)	57, 195, 266, 425, 478, 486
MspR9I	CCNGG	5 cut(s)	58, 266, 425, 486, 487
MwoI	GCNNNNNNNGC	3 cut(s)	122, 544, 571
NciI	CCSGG	5 cut(s)	58, 266, 425, 486, 487
NdeII	GATC	6 cut(s)	138, 150, 201, 222, 253, 346
NlaIII	CATG	1 cut(s)	380
NlaIV	GGNNCC	4 cut(s)	61, 83, 190, 476
NspI	RCATGY	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	413
PaeR7I	CTCGAG	1 cut(s)	281
PciI	ACATGT	1 cut(s)	376
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	437
PfoI	TCCNGGA	1 cut(s)	56
PkrI	GCNGC	2 cut(s)	507, 564
PpuMI	RGGWCCY	1 cut(s)	60
PscI	ACATGT	1 cut(s)	376
Psp5II	RGGWCCY	1 cut(s)	60
PspFI	CCCAGC	1 cut(s)	490
PspN4I	GGNNCC	4 cut(s)	61, 83, 190, 476
PspPI	GGNCC	4 cut(s)	60, 82, 124, 475
PspPPI	RGGWCCY	1 cut(s)	60
PspXI	VCTCGAGB	1 cut(s)	281
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	2 cut(s)	506, 563
Sau3AI	GATC	6 cut(s)	138, 150, 201, 222, 253, 346
Sau96I	GGNCC	4 cut(s)	60, 82, 124, 475
ScrFI	CCNGG	5 cut(s)	58, 266, 425, 486, 487
SetI	ASST	8 cut(s)	56, 65, 93, 149, 356, 412, 549, 554
SfaNI	GCATC	1 cut(s)	330
Sfr274I	CTCGAG	1 cut(s)	281
SfuI	TTCGAA	1 cut(s)	413
SinI	GGWCC	2 cut(s)	60, 82
SlaI	CTCGAG	1 cut(s)	281
SmaI	CCCGGG	1 cut(s)	487
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	1 cut(s)	33
SsiI	CCGC	5 cut(s)	278, 506, 524, 538, 562
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	5 cut(s)	56, 264, 423, 484, 485
TaaI	ACNGT	1 cut(s)	173
TaqI	TCGA	3 cut(s)	141, 282, 413
TasI	AATT	1 cut(s)	33
TauI	GCSGC	2 cut(s)	508, 565
TfiI	GAWTC	1 cut(s)	437
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TspDTI	ATGAA	2 cut(s)	277, 467
TspGWI	ACGGA	1 cut(s)	420
TspMI	CCCGGG	1 cut(s)	485
VpaK11BI	GGWCC	2 cut(s)	60, 82
XapI	RAATTY	1 cut(s)	33
XceI	RCATGY	1 cut(s)	380
XhoI	CTCGAG	1 cut(s)	281
XmaI	CCCGGG	1 cut(s)	485
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.