Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000340.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Forward (+)

177298 .. 182541

Gene Structure 5244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000340.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1824 bp

atgattcttgagcctagctcagacgttctaactcttgagcaagctctagctttggaagcaaataaagcagctttgaaggcaaataaggcgaaagccgtcatcctaatgactcgtcatatggatgattcgctccagtacgagtatctgaatgaagaagaccccataaggctttgggcctcactcgaagaactctttggcaactctctgcttcctgacttagaagtgagatggcataatctccgcttctgtgatttcaagtcatttttttactacaagtcggaatcacttcatattaaatccttaatggaattatgtagaaaagaaatcacagatacgatgttgattgagaggactctctctaccttccctatctctgccttgatggttgctaagagttatcaaatcgatgttactgcaggacggatcacaaggagtccaattatagttgcgcccctaagagagggcgccaagagcgaaaccttaaatctaaggaaaattctggacgttttggtccatattctctcttcaatgaggaaggtaaccgccataataggcggataccgaaccgaagaggtcaaggtggaaaaagagagggaggcaatgccgctggccatgttggtgtcaccaccaacactaagagccatcctaatgacactttcaaagcaccttaatcatgggagtttgagcacagagatatatattctcgatgtggagcattcggtcattgggcacacatttgtagagcttgtgagagtattgccacctcctacaaagcatattgtgaagcaagagatgctcactatgtggaacaagaagatcaagaaggtttacaacgtcaatttggggatttgtgggctactcgatttggggtttttacggctcttcgtcctctcttcgatttgggatttctgggcttgtgttggtcttcgaatgagaaaggtaatggagcctgggctttcgtctgggcagcaagccaccgcgcctctgtatcactcgttcaagccttcaccacagctccctcgaaccaccgtagctctcctcaagccaccacaactccagtgctttatctcggctgctttagactcgctttgtaatgcgcaccgccttcaatctctagctctgactctttcacacggtgctttaagtcgaatcctctggagctgtggaattggaatatctatttgttccccttgtggtgttttggagtggaaaggccttcggctccaggacctcaatctggctgaggcccacgagcttcagttcaacaactgcaagagaaccaaagaggcccaaatccacgggatcgagaccttgatatgcatcccaacttccgacggtgttcttgaaatgggttcctccggtttgatcagagagaactgggggttgatccagcaagccaagtcgttgttcgggtcagatcagcctgacccggaaacaagaccgctcgagttcatcaatcggaacttctccatttttgacatcggcatcattgccggcgtgcaggaagaggatcacagctcgtacaatgacgacaagaaacatgtttttggttatagcaagaagaagaatggagcttcaaacccaaacccgaacttcatagattccgactgccagatgaaaagagcgccgaagaaacagggccggaaacctgggctgggccgagacacgccgctcaacgacgtggaggcggagcagcagcggcgggagaagctcacctcgcaagggcggcgttggaagcgagggagtgagcgtggaggtgaggaaggcggtgttggaagcgagggagtgagcccgaaagaaggaagaagaaagagaaaaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

607

Amino Acids

68.23

Weight (kDa)

9.0

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	509
Acc16I	TGCGCA	1 cut(s)	1098
AccB1I	GGYRCC	1 cut(s)	464
AccBSI	CCGCTC	2 cut(s)	1444, 1672
AccII	CGCG	1 cut(s)	980
AclWI	GGATC	4 cut(s)	431, 1310, 1381, 1518
AcoI	YGGCCR	1 cut(s)	609
AcsI	RAATTY	1 cut(s)	495
AcuI	CTGAAG	1 cut(s)	1241
AcyI	GRCGYC	1 cut(s)	465
AdeI	CACNNNGTG	2 cut(s)	804, 1136
AfaI	GTAC	2 cut(s)	137, 1523
AfiI	CCNNNNNNNGG	5 cut(s)	460, 1237, 1655, 1722, 1799
AflIII	ACRYGT	1 cut(s)	1540
AgsI	TTSAA	9 cut(s)	76, 256, 528, 660, 1000, 1109, 1264, 1346, 1578
AjiI	CACGTC	1 cut(s)	1681
AjnI	CCWGG	3 cut(s)	949, 1224, 1648
AjuI	GAANNNNNNNTTGG	6 cut(s)	177, 209, 1391, 1423, 1755, 1787
Alw21I	GWGCWC	1 cut(s)	689
Alw26I	GTCTC	2 cut(s)	1301, 1656
AlwI	GGATC	4 cut(s)	431, 1310, 1381, 1518
Ama87I	CYCGRG	1 cut(s)	1445
AoxI	GGCC	7 cut(s)	174, 609, 1213, 1245, 1287, 1639, 1657
ApeKI	GCWGC	5 cut(s)	68, 967, 1073, 1693, 1696
ApoI	RAATTY	1 cut(s)	495
Asp700I	GAANNNNTTC	1 cut(s)	285
AspLEI	GCGC	5 cut(s)	451, 467, 982, 1099, 1627
AspS9I	GGNCC	7 cut(s)	174, 511, 1228, 1246, 1288, 1639, 1657
AsuC2I	CCSGG	1 cut(s)	1430
AsuHPI	GGTGA	4 cut(s)	615, 999, 1705, 1769
AsuII	TTCGAA	1 cut(s)	928
AvaI	CYCGRG	1 cut(s)	1445
AvaII	GGWCC	2 cut(s)	511, 1228
BaeGI	GKGCMC	1 cut(s)	732
BalI	TGGCCA	1 cut(s)	611
BanI	GGYRCC	1 cut(s)	464
BanII	GRGCYC	1 cut(s)	1793
BauI	CACGAG	1 cut(s)	1250
BbsI	GAAGAC	2 cut(s)	162, 917
Bbv12I	GWGCWC	1 cut(s)	689
BbvCI	CCTCAGC	1 cut(s)	1242
BbvI	GCAGC	5 cut(s)	80, 979, 1060, 1705, 1708
BccI	CCATC	3 cut(s)	222, 376, 650
BceAI	ACGGC	2 cut(s)	80, 893
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BciT130I	CCWGG	3 cut(s)	951, 1226, 1650
BciVI	GTATCC	1 cut(s)	551
BclI	TGATCA	1 cut(s)	1365
BcnI	CCSGG	1 cut(s)	1430
BcoDI	GTCTC	2 cut(s)	1301, 1656
BfaI	CTAG	3 cut(s)	15, 47, 1115
BfmI	CTRYAG	1 cut(s)	414
BfoI	RGCGCY	2 cut(s)	468, 1628
BfuI	GTATCC	1 cut(s)	551
BisI	GCNGC	9 cut(s)	69, 605, 968, 1074, 1670, 1694, 1697, 1700, 1727
BlsI	GCNGC	9 cut(s)	70, 606, 969, 1075, 1671, 1695, 1698, 1701, 1728
Bme1390I	CCNGG	4 cut(s)	951, 1226, 1430, 1650
Bme18I	GGWCC	2 cut(s)	511, 1228
BmeT110I	CYCGRG	1 cut(s)	1445
BmgBI	CACGTC	1 cut(s)	1681
BmgT120I	GGNCC	7 cut(s)	174, 511, 1228, 1246, 1288, 1639, 1657
BmiI	GGNNCC	4 cut(s)	466, 948, 1223, 1354
BmrFI	CCNGG	4 cut(s)	951, 1226, 1430, 1650
BmrI	ACTGGG	1 cut(s)	1387
BmsI	GCATC	3 cut(s)	783, 1329, 1494
BmuI	ACTGGG	1 cut(s)	1387
BpiI	GAAGAC	2 cut(s)	162, 917
BplI	GAGNNNNNCTC	1 cut(s)	34
BpmI	CTGGAG	4 cut(s)	116, 1040, 1177, 1208
Bpu10I	CCTNAGC	1 cut(s)	1242
Bpu14I	TTCGAA	1 cut(s)	928
BpuEI	CTTGAG	3 cut(s)	29, 56, 1025
BpuMI	CCSGG	1 cut(s)	1430
Bsa29I	ATCGAT	1 cut(s)	405
BsaBI	GATNNNNATC	1 cut(s)	1319
BsaHI	GRCGYC	1 cut(s)	465
BsaI	GGTCTC	1 cut(s)	1301
BsaJI	CCNNGG	3 cut(s)	950, 1297, 1649
BsaWI	WCCGGW	1 cut(s)	1358
BsaXI	ACNNNNNCTCC	6 cut(s)	999, 1029, 1038, 1068, 1735, 1765
Bsc4I	CCNNNNNNNGG	5 cut(s)	460, 1237, 1655, 1722, 1799
Bse118I	RCCGGY	1 cut(s)	1493
Bse1I	ACTGG	3 cut(s)	133, 1057, 1382
Bse3DI	GCAATG	2 cut(s)	606, 1488
Bse8I	GATNNNNATC	1 cut(s)	1319
BseBI	CCWGG	3 cut(s)	951, 1226, 1650
BseCI	ATCGAT	1 cut(s)	405
BseDI	CCNNGG	3 cut(s)	950, 1297, 1649
BseGI	GGATG	4 cut(s)	99, 127, 642, 1320
BseJI	GATNNNNATC	1 cut(s)	1319
BseLI	CCNNNNNNNGG	5 cut(s)	460, 1237, 1655, 1722, 1799
BseMI	GCAATG	2 cut(s)	606, 1488
BseMII	CTCAG	2 cut(s)	33, 1233
BseNI	ACTGG	3 cut(s)	133, 1057, 1382
BseRI	GAGGAG	1 cut(s)	1028
BseSI	GKGCMC	1 cut(s)	732
BseXI	GCAGC	5 cut(s)	80, 979, 1060, 1705, 1708
BseYI	CCCAGC	1 cut(s)	1654
BsgI	GTGCAG	1 cut(s)	1520
Bsh1236I	CGCG	1 cut(s)	980
BshFI	GGCC	7 cut(s)	176, 611, 1215, 1247, 1289, 1641, 1659
BshNI	GGYRCC	1 cut(s)	464
BshVI	ATCGAT	1 cut(s)	405
BsiHKAI	GWGCWC	1 cut(s)	689
BsiHKCI	CYCGRG	1 cut(s)	1445
BsiSI	CCGG	4 cut(s)	1359, 1430, 1494, 1642
BslI	CCNNNNNNNGG	5 cut(s)	460, 1237, 1655, 1722, 1799
BsmAI	GTCTC	2 cut(s)	1301, 1656
BsmI	GAATGC	1 cut(s)	715
BsnI	GGCC	7 cut(s)	176, 611, 1215, 1247, 1289, 1641, 1659
Bso31I	GGTCTC	1 cut(s)	1301
BsoBI	CYCGRG	1 cut(s)	1445
Bsp119I	TTCGAA	1 cut(s)	928
Bsp1286I	GDGCHC	3 cut(s)	689, 732, 1793
Bsp143I	GATC	7 cut(s)	423, 816, 1302, 1365, 1386, 1417, 1510
BspANI	GGCC	7 cut(s)	176, 611, 1215, 1247, 1289, 1641, 1659
BspCNI	CTCAG	2 cut(s)	32, 1234
BspDI	ATCGAT	1 cut(s)	405
BspFNI	CGCG	1 cut(s)	980
BspLI	GGNNCC	4 cut(s)	466, 948, 1223, 1354
BspMAI	CTGCAG	1 cut(s)	418
BspPI	GGATC	4 cut(s)	431, 1310, 1381, 1518
BspQI	GCTCTTC	1 cut(s)	887
BspT104I	TTCGAA	1 cut(s)	928
BspT107I	GGYRCC	1 cut(s)	464
BspTNI	GGTCTC	1 cut(s)	1301
BsrBI	CCGCTC	2 cut(s)	1444, 1672
BsrDI	GCAATG	2 cut(s)	606, 1488
BsrFI	RCCGGY	1 cut(s)	1493
BsrI	ACTGG	3 cut(s)	133, 1057, 1382
BssAI	RCCGGY	1 cut(s)	1493
BssECI	CCNNGG	3 cut(s)	950, 1297, 1649
BssMI	GATC	7 cut(s)	423, 816, 1302, 1365, 1386, 1417, 1510
BssNI	GRCGYC	1 cut(s)	465
BssSI	CACGAG	1 cut(s)	1250
Bst2BI	CACGAG	1 cut(s)	1250
Bst2UI	CCWGG	3 cut(s)	951, 1226, 1650
Bst4CI	ACNGT	3 cut(s)	1030, 1136, 1337
Bst6I	CTCTTC	5 cut(s)	529, 564, 887, 898, 1500
BstACI	GRCGYC	1 cut(s)	465
BstAPI	GCANNNNNTGC	1 cut(s)	793
BstBI	TTCGAA	1 cut(s)	928
BstC8I	GCNNGC	6 cut(s)	42, 609, 972, 1395, 1495, 1499
BstDEI	CTNAG	7 cut(s)	19, 217, 390, 455, 488, 635, 1242
BstDSI	CCRYGG	1 cut(s)	1297
BstEII	GGTNACC	1 cut(s)	538
BstENI	CCTNNNNNAGG	1 cut(s)	458
BstF5I	GGATG	4 cut(s)	99, 127, 642, 1320
BstFNI	CGCG	1 cut(s)	980
BstH2I	RGCGCY	2 cut(s)	468, 1628
BstHHI	GCGC	5 cut(s)	451, 467, 982, 1099, 1627
BstKTI	GATC	7 cut(s)	426, 819, 1305, 1368, 1389, 1420, 1513
BstMAI	GTCTC	2 cut(s)	1301, 1656
BstMBI	GATC	7 cut(s)	423, 816, 1302, 1365, 1386, 1417, 1510
BstNI	CCWGG	3 cut(s)	951, 1226, 1650
BstNSI	RCATGY	1 cut(s)	1544
BstPI	GGTNACC	1 cut(s)	538
BstSCI	CCNGG	4 cut(s)	949, 1224, 1428, 1648
BstSFI	CTRYAG	1 cut(s)	414
BstSLI	GKGCMC	1 cut(s)	732
BstUI	CGCG	1 cut(s)	980
BstV1I	GCAGC	5 cut(s)	80, 979, 1060, 1705, 1708
BstV2I	GAAGAC	2 cut(s)	162, 917
Bsu15I	ATCGAT	1 cut(s)	405
BsuI	GTATCC	1 cut(s)	551
BsuRI	GGCC	7 cut(s)	176, 611, 1215, 1247, 1289, 1641, 1659
BsuTUI	ATCGAT	1 cut(s)	405
BtgI	CCRYGG	1 cut(s)	1297
BtrI	CACGTC	1 cut(s)	1681
BtsCI	GGATG	4 cut(s)	99, 127, 642, 1320
BtsIMutI	CAGTG	1 cut(s)	1064
Cac8I	GCNNGC	6 cut(s)	42, 609, 972, 1395, 1495, 1499
CfoI	GCGC	5 cut(s)	451, 467, 982, 1099, 1627
Cfr10I	RCCGGY	1 cut(s)	1493
Cfr13I	GGNCC	7 cut(s)	174, 511, 1228, 1246, 1288, 1639, 1657
ClaI	ATCGAT	1 cut(s)	405
Csp6I	GTAC	2 cut(s)	136, 1522
CviAII	CATG	3 cut(s)	613, 674, 1541
CviQI	GTAC	2 cut(s)	136, 1522
DdeI	CTNAG	7 cut(s)	19, 217, 390, 455, 488, 635, 1242
DinI	GGCGCC	1 cut(s)	466
DpnI	GATC	7 cut(s)	425, 818, 1304, 1367, 1388, 1419, 1512
DpnII	GATC	7 cut(s)	423, 816, 1302, 1365, 1386, 1417, 1510
DraIII	CACNNNGTG	2 cut(s)	804, 1136
DrdI	GACNNNNNNGTC	1 cut(s)	509
DseDI	GACNNNNNNGTC	1 cut(s)	509
EaeI	YGGCCR	1 cut(s)	609
Eam1104I	CTCTTC	5 cut(s)	529, 564, 887, 898, 1500
EarI	CTCTTC	5 cut(s)	529, 564, 887, 898, 1500
EciI	GGCGGA	2 cut(s)	570, 1703
Eco147I	AGGCCT	1 cut(s)	1215
Eco24I	GRGCYC	1 cut(s)	1793
Eco31I	GGTCTC	1 cut(s)	1301
Eco47I	GGWCC	2 cut(s)	511, 1228
Eco57I	CTGAAG	1 cut(s)	1241
Eco88I	CYCGRG	1 cut(s)	1445
Eco91I	GGTNACC	1 cut(s)	538
EcoNI	CCTNNNNNAGG	1 cut(s)	458
EcoO109I	RGGNCCY	1 cut(s)	1228
EcoO65I	GGTNACC	1 cut(s)	538
EcoRII	CCWGG	3 cut(s)	949, 1224, 1648
EcoT22I	ATGCAT	1 cut(s)	1322
EcoT38I	GRGCYC	1 cut(s)	1793
EgeI	GGCGCC	1 cut(s)	466
EheI	GGCGCC	1 cut(s)	466
FaeI	CATG	3 cut(s)	616, 677, 1544
FatI	CATG	3 cut(s)	612, 673, 1540
FauI	CCCGC	1 cut(s)	1695
FauNDI	CATATG	1 cut(s)	117
FbaI	TGATCA	1 cut(s)	1365
Fnu4HI	GCNGC	9 cut(s)	69, 605, 968, 1074, 1670, 1694, 1697, 1700, 1727
FokI	GGATG	4 cut(s)	86, 134, 629, 1307
FriOI	GRGCYC	1 cut(s)	1793
Fsp4HI	GCNGC	9 cut(s)	69, 605, 968, 1074, 1670, 1694, 1697, 1700, 1727
FspAI	RTGCGCAY	1 cut(s)	1098
FspBI	CTAG	3 cut(s)	15, 47, 1115
FspI	TGCGCA	1 cut(s)	1098
GlaI	GCGC	5 cut(s)	450, 466, 981, 1098, 1626
GluI	GCNGC	9 cut(s)	69, 605, 968, 1074, 1670, 1694, 1697, 1700, 1727
GsaI	CCCAGC	1 cut(s)	1658
GsuI	CTGGAG	4 cut(s)	116, 1040, 1177, 1208
HaeII	RGCGCY	2 cut(s)	468, 1628
HaeIII	GGCC	7 cut(s)	176, 611, 1215, 1247, 1289, 1641, 1659
HapII	CCGG	4 cut(s)	1359, 1430, 1494, 1642
HhaI	GCGC	5 cut(s)	451, 467, 982, 1099, 1627
Hin1I	GRCGYC	1 cut(s)	465
Hin1II	CATG	3 cut(s)	616, 677, 1544
Hin6I	GCGC	5 cut(s)	449, 465, 980, 1097, 1625
HinP1I	GCGC	5 cut(s)	449, 465, 980, 1097, 1625
HpaII	CCGG	4 cut(s)	1359, 1430, 1494, 1642
HphI	GGTGA	4 cut(s)	615, 999, 1705, 1769
Hpy166II	GTNNAC	1 cut(s)	829
Hpy188I	TCNGA	9 cut(s)	22, 147, 280, 1122, 1333, 1370, 1417, 1461, 1606
Hpy188III	TCNNGA	9 cut(s)	8, 35, 212, 500, 704, 820, 1156, 1306, 1343
Hpy8I	GTNNAC	1 cut(s)	829
Hpy99I	CGWCG	2 cut(s)	1337, 1682
HpyAV	CCTTC	9 cut(s)	70, 373, 529, 817, 1014, 1115, 1226, 1757, 1793
HpyCH4III	ACNGT	3 cut(s)	1030, 1136, 1337
HpyCH4IV	ACGT	4 cut(s)	24, 504, 834, 1680
HpyCH4V	TGCA	4 cut(s)	416, 1272, 1320, 1501
HpyF3I	CTNAG	7 cut(s)	19, 217, 390, 455, 488, 635, 1242
HpySE526I	ACGT	4 cut(s)	24, 504, 834, 1680
Hsp92I	GRCGYC	1 cut(s)	465
Hsp92II	CATG	3 cut(s)	616, 677, 1544
HspAI	GCGC	5 cut(s)	449, 465, 980, 1097, 1625
KasI	GGCGCC	1 cut(s)	464
KroI	GCCGGC	1 cut(s)	1493
KroNI	GCCGGC	1 cut(s)	1495
Ksp22I	TGATCA	1 cut(s)	1365
Kzo9I	GATC	7 cut(s)	423, 816, 1302, 1365, 1386, 1417, 1510
LguI	GCTCTTC	1 cut(s)	887
LmnI	GCTCC	8 cut(s)	135, 712, 946, 1020, 1158, 1227, 1571, 1690
Lsp1109I	GCAGC	5 cut(s)	80, 979, 1060, 1705, 1708
LweI	GCATC	3 cut(s)	783, 1329, 1494
MaeI	CTAG	3 cut(s)	15, 47, 1115
MaeII	ACGT	4 cut(s)	24, 504, 834, 1680
MaeIII	GTNAC	3 cut(s)	409, 538, 621
MalI	GATC	7 cut(s)	425, 818, 1304, 1367, 1388, 1419, 1512
MbiI	CCGCTC	2 cut(s)	1444, 1672
MboI	GATC	7 cut(s)	423, 816, 1302, 1365, 1386, 1417, 1510
MhlI	GDGCHC	3 cut(s)	689, 732, 1793
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	5 cut(s)	308, 438, 495, 838, 1167
MluNI	TGGCCA	1 cut(s)	611
Mly113I	GGCGCC	1 cut(s)	465
MlyI	GAGTC	5 cut(s)	103, 346, 442, 1076, 1117
MmeI	TCCRAC	5 cut(s)	258, 1356, 1629, 1712, 1753
Mox20I	TGGCCA	1 cut(s)	611
Mph1103I	ATGCAT	1 cut(s)	1322
MroNI	GCCGGC	1 cut(s)	1493
MroXI	GAANNNNTTC	1 cut(s)	285
MscI	TGGCCA	1 cut(s)	611
MseI	TTAA	5 cut(s)	294, 302, 482, 669, 1142
MslI	CAYNNNNRTG	4 cut(s)	104, 120, 617, 647
Msp20I	TGGCCA	1 cut(s)	611
MspA1I	CMGCKG	2 cut(s)	607, 1699
MspI	CCGG	4 cut(s)	1359, 1430, 1494, 1642
MspR9I	CCNGG	4 cut(s)	951, 1226, 1430, 1650
Mva1269I	GAATGC	1 cut(s)	715
MvaI	CCWGG	3 cut(s)	951, 1226, 1650
MvnI	CGCG	1 cut(s)	980
NaeI	GCCGGC	1 cut(s)	1495
NarI	GGCGCC	1 cut(s)	465
NciI	CCSGG	1 cut(s)	1430
NdeI	CATATG	1 cut(s)	117
NdeII	GATC	7 cut(s)	423, 816, 1302, 1365, 1386, 1417, 1510
NgoMIV	GCCGGC	1 cut(s)	1493
NlaIII	CATG	3 cut(s)	616, 677, 1544
NlaIV	GGNNCC	4 cut(s)	466, 948, 1223, 1354
NmeAIII	GCCGAG	2 cut(s)	1049, 1685
NmuCI	GTSAC	1 cut(s)	621
NsbI	TGCGCA	1 cut(s)	1098
NsiI	ATGCAT	1 cut(s)	1322
NspI	RCATGY	1 cut(s)	1544
NspV	TTCGAA	1 cut(s)	928
PaeR7I	CTCGAG	1 cut(s)	1445
PceI	AGGCCT	1 cut(s)	1215
PciI	ACATGT	1 cut(s)	1540
PciSI	GCTCTTC	1 cut(s)	887
PctI	GAATGC	1 cut(s)	715
PdiI	GCCGGC	1 cut(s)	1495
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	5 cut(s)	4, 125, 281, 1149, 1601
PfoI	TCCNGGA	1 cut(s)	1224
PkrI	GCNGC	9 cut(s)	70, 606, 969, 1075, 1671, 1695, 1698, 1701, 1728
PleI	GAGTC	5 cut(s)	103, 346, 441, 1076, 1117
PluTI	GGCGCC	1 cut(s)	468
PpsI	GAGTC	5 cut(s)	103, 346, 441, 1076, 1117
PpuMI	RGGWCCY	1 cut(s)	1228
PscI	ACATGT	1 cut(s)	1540
Psp5II	RGGWCCY	1 cut(s)	1228
Psp6I	CCWGG	3 cut(s)	949, 1224, 1648
PspEI	GGTNACC	1 cut(s)	538
PspFI	CCCAGC	1 cut(s)	1654
PspGI	CCWGG	3 cut(s)	949, 1224, 1648
PspN4I	GGNNCC	4 cut(s)	466, 948, 1223, 1354
PspPI	GGNCC	7 cut(s)	174, 511, 1228, 1246, 1288, 1639, 1657
PspPPI	RGGWCCY	1 cut(s)	1228
PspXI	VCTCGAGB	1 cut(s)	1445
PsrI	GAACNNNNNNTAC	2 cut(s)	980, 1012
PstI	CTGCAG	1 cut(s)	418
RsaI	GTAC	2 cut(s)	137, 1523
RsaNI	GTAC	2 cut(s)	136, 1522
RseI	CAYNNNNRTG	4 cut(s)	104, 120, 617, 647
SapI	GCTCTTC	1 cut(s)	887
SaqAI	TTAA	5 cut(s)	294, 302, 482, 669, 1142
SatI	GCNGC	9 cut(s)	69, 605, 968, 1074, 1670, 1694, 1697, 1700, 1727
Sau3AI	GATC	7 cut(s)	423, 816, 1302, 1365, 1386, 1417, 1510
Sau96I	GGNCC	7 cut(s)	174, 511, 1228, 1246, 1288, 1639, 1657
SchI	GAGTC	5 cut(s)	103, 346, 442, 1076, 1117
ScrFI	CCNGG	4 cut(s)	951, 1226, 1430, 1650
SduI	GDGCHC	3 cut(s)	689, 732, 1793
SfaNI	GCATC	3 cut(s)	783, 1329, 1494
SfcI	CTRYAG	1 cut(s)	414
SfoI	GGCGCC	1 cut(s)	466
Sfr274I	CTCGAG	1 cut(s)	1445
SfuI	TTCGAA	1 cut(s)	928
SinI	GGWCC	2 cut(s)	511, 1228
SlaI	CTCGAG	1 cut(s)	1445
SmiMI	CAYNNNNRTG	4 cut(s)	104, 120, 617, 647
SmlI	CTYRAG	4 cut(s)	8, 35, 1040, 1445
SmoI	CTYRAG	4 cut(s)	8, 35, 1040, 1445
Sse9I	AATT	5 cut(s)	308, 438, 495, 838, 1167
SseBI	AGGCCT	1 cut(s)	1215
SspDI	GGCGCC	1 cut(s)	464
SspMI	CTAG	3 cut(s)	15, 47, 1115
StuI	AGGCCT	1 cut(s)	1215
StyD4I	CCNGG	4 cut(s)	949, 1224, 1428, 1648
TaaI	ACNGT	3 cut(s)	1030, 1136, 1337
TaiI	ACGT	4 cut(s)	27, 507, 837, 1683
TaqII	GACCGA	1 cut(s)	709
TasI	AATT	5 cut(s)	308, 438, 495, 838, 1167
TauI	GCSGC	4 cut(s)	607, 1672, 1702, 1729
TfiI	GAWTC	5 cut(s)	4, 125, 281, 1149, 1601
Tru1I	TTAA	5 cut(s)	294, 302, 482, 669, 1142
Tru9I	TTAA	5 cut(s)	294, 302, 482, 669, 1142
TscAI	CASTG	1 cut(s)	1064
TseFI	GTSAC	1 cut(s)	621
TseI	GCWGC	5 cut(s)	68, 967, 1073, 1693, 1696
Tsp45I	GTSAC	1 cut(s)	621
TspDTI	ATGAA	5 cut(s)	165, 278, 1441, 1585, 1631
TspGWI	ACGGA	1 cut(s)	436
TspRI	CASTG	1 cut(s)	1064
VpaK11BI	GGWCC	2 cut(s)	511, 1228
XagI	CCTNNNNNAGG	1 cut(s)	458
XapI	RAATTY	1 cut(s)	495
XceI	RCATGY	1 cut(s)	1544
XhoI	CTCGAG	1 cut(s)	1445
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	3 cut(s)	15, 47, 1115
Zsp2I	ATGCAT	1 cut(s)	1322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.