transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 3 cut(s) | 97, 325, 346 |
| AciI | CCGC | 5 cut(s) | 95, 323, 346, 355, 420 |
| AclWI | GGATC | 3 cut(s) | 34, 78, 171 |
| AcvI | CACGTG | 1 cut(s) | 334 |
| AfaI | GTAC | 1 cut(s) | 176 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 241, 308, 337, 375, 452 |
| AflIII | ACRYGT | 1 cut(s) | 193 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 44, 76, 408, 440 |
| AluBI | AGCT | 3 cut(s) | 171, 227, 364 |
| AluI | AGCT | 3 cut(s) | 171, 227, 364 |
| Alw21I | GWGCWC | 1 cut(s) | 229 |
| Alw26I | GTCTC | 1 cut(s) | 309 |
| AlwI | GGATC | 3 cut(s) | 34, 78, 171 |
| Ama87I | CYCGRG | 2 cut(s) | 98, 302 |
| AoxI | GGCC | 3 cut(s) | 292, 310, 339 |
| ApeKI | GCWGC | 1 cut(s) | 379 |
| AspLEI | GCGC | 1 cut(s) | 280 |
| AspS9I | GGNCC | 2 cut(s) | 292, 310 |
| AsuC2I | CCSGG | 3 cut(s) | 242, 303, 304 |
| AsuHPI | GGTGA | 2 cut(s) | 358, 422 |
| AvaI | CYCGRG | 2 cut(s) | 98, 302 |
| BanII | GRGCYC | 2 cut(s) | 229, 446 |
| BbrPI | CACGTG | 1 cut(s) | 334 |
| Bbv12I | GWGCWC | 1 cut(s) | 229 |
| BbvI | GCAGC | 1 cut(s) | 391 |
| BclI | TGATCA | 1 cut(s) | 18 |
| BcnI | CCSGG | 3 cut(s) | 242, 303, 304 |
| BcoDI | GTCTC | 1 cut(s) | 309 |
| BfaI | CTAG | 1 cut(s) | 207 |
| BfoI | RGCGCY | 1 cut(s) | 281 |
| BisI | GCNGC | 4 cut(s) | 323, 347, 380, 421 |
| BlsI | GCNGC | 4 cut(s) | 324, 348, 381, 422 |
| Bme1390I | CCNGG | 3 cut(s) | 242, 303, 304 |
| BmeT110I | CYCGRG | 2 cut(s) | 98, 302 |
| BmgT120I | GGNCC | 2 cut(s) | 292, 310 |
| BmiI | GGNNCC | 1 cut(s) | 7 |
| BmrFI | CCNGG | 3 cut(s) | 242, 303, 304 |
| BmrI | ACTGGG | 1 cut(s) | 40 |
| BmsI | GCATC | 1 cut(s) | 147 |
| BmuI | ACTGGG | 1 cut(s) | 40 |
| BpuMI | CCSGG | 3 cut(s) | 242, 303, 304 |
| BsaAI | YACGTR | 1 cut(s) | 334 |
| BsaJI | CCNNGG | 1 cut(s) | 302 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 388, 418 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 241, 308, 337, 375, 452 |
| Bse118I | RCCGGY | 1 cut(s) | 146 |
| Bse1I | ACTGG | 1 cut(s) | 35 |
| Bse3DI | GCAATG | 1 cut(s) | 141 |
| BseDI | CCNNGG | 1 cut(s) | 302 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 241, 308, 337, 375, 452 |
| BseMI | GCAATG | 1 cut(s) | 141 |
| BseNI | ACTGG | 1 cut(s) | 35 |
| BseXI | GCAGC | 1 cut(s) | 391 |
| BseYI | CCCAGC | 1 cut(s) | 307 |
| BsgI | GTGCAG | 1 cut(s) | 173 |
| BshFI | GGCC | 3 cut(s) | 294, 312, 341 |
| BsiHKAI | GWGCWC | 1 cut(s) | 229 |
| BsiHKCI | CYCGRG | 2 cut(s) | 98, 302 |
| BsiSI | CCGG | 4 cut(s) | 147, 242, 295, 303 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 241, 308, 337, 375, 452 |
| BsmAI | GTCTC | 1 cut(s) | 309 |
| BsnI | GGCC | 3 cut(s) | 294, 312, 341 |
| BsoBI | CYCGRG | 2 cut(s) | 98, 302 |
| Bsp1286I | GDGCHC | 2 cut(s) | 229, 446 |
| Bsp143I | GATC | 4 cut(s) | 18, 39, 70, 163 |
| BspACI | CCGC | 5 cut(s) | 95, 323, 346, 355, 420 |
| BspANI | GGCC | 3 cut(s) | 294, 312, 341 |
| BspLI | GGNNCC | 1 cut(s) | 7 |
| BspPI | GGATC | 3 cut(s) | 34, 78, 171 |
| BsrBI | CCGCTC | 3 cut(s) | 97, 325, 346 |
| BsrDI | GCAATG | 1 cut(s) | 141 |
| BsrFI | RCCGGY | 1 cut(s) | 146 |
| BsrI | ACTGG | 1 cut(s) | 35 |
| BssAI | RCCGGY | 1 cut(s) | 146 |
| BssECI | CCNNGG | 1 cut(s) | 302 |
| BssMI | GATC | 4 cut(s) | 18, 39, 70, 163 |
| Bst6I | CTCTTC | 1 cut(s) | 153 |
| BstBAI | YACGTR | 1 cut(s) | 334 |
| BstC8I | GCNNGC | 3 cut(s) | 48, 148, 152 |
| BstH2I | RGCGCY | 1 cut(s) | 281 |
| BstHHI | GCGC | 1 cut(s) | 280 |
| BstKTI | GATC | 4 cut(s) | 21, 42, 73, 166 |
| BstMAI | GTCTC | 1 cut(s) | 309 |
| BstMBI | GATC | 4 cut(s) | 18, 39, 70, 163 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 352, 361, 370, 379, 388, 429 |
| BstNSI | RCATGY | 1 cut(s) | 197 |
| BstSCI | CCNGG | 3 cut(s) | 240, 301, 302 |
| BstV1I | GCAGC | 1 cut(s) | 391 |
| BsuRI | GGCC | 3 cut(s) | 294, 312, 341 |
| BtsI | GCAGTG | 1 cut(s) | 356 |
| BtsIMutI | CAGTG | 1 cut(s) | 356 |
| Cac8I | GCNNGC | 3 cut(s) | 48, 148, 152 |
| CfoI | GCGC | 1 cut(s) | 280 |
| Cfr10I | RCCGGY | 1 cut(s) | 146 |
| Cfr13I | GGNCC | 2 cut(s) | 292, 310 |
| Cfr9I | CCCGGG | 1 cut(s) | 302 |
| Csp6I | GTAC | 1 cut(s) | 175 |
| CviAII | CATG | 1 cut(s) | 194 |
| CviQI | GTAC | 1 cut(s) | 175 |
| DpnI | GATC | 4 cut(s) | 20, 41, 72, 165 |
| DpnII | GATC | 4 cut(s) | 18, 39, 70, 163 |
| Eam1104I | CTCTTC | 1 cut(s) | 153 |
| EarI | CTCTTC | 1 cut(s) | 153 |
| Ecl136II | GAGCTC | 1 cut(s) | 227 |
| Eco24I | GRGCYC | 2 cut(s) | 229, 446 |
| Eco53kI | GAGCTC | 1 cut(s) | 227 |
| Eco72I | CACGTG | 1 cut(s) | 334 |
| Eco88I | CYCGRG | 2 cut(s) | 98, 302 |
| EcoICRI | GAGCTC | 1 cut(s) | 227 |
| EcoT38I | GRGCYC | 2 cut(s) | 229, 446 |
| FaeI | CATG | 1 cut(s) | 197 |
| FaiI | YATR | 2 cut(s) | 195, 253 |
| FatI | CATG | 1 cut(s) | 193 |
| FauI | CCCGC | 1 cut(s) | 348 |
| FbaI | TGATCA | 1 cut(s) | 18 |
| Fnu4HI | GCNGC | 4 cut(s) | 323, 347, 380, 421 |
| FriOI | GRGCYC | 2 cut(s) | 229, 446 |
| Fsp4HI | GCNGC | 4 cut(s) | 323, 347, 380, 421 |
| FspBI | CTAG | 1 cut(s) | 207 |
| GlaI | GCGC | 1 cut(s) | 279 |
| GluI | GCNGC | 4 cut(s) | 323, 347, 380, 421 |
| GsaI | CCCAGC | 1 cut(s) | 311 |
| HaeII | RGCGCY | 1 cut(s) | 281 |
| HaeIII | GGCC | 3 cut(s) | 294, 312, 341 |
| HapII | CCGG | 4 cut(s) | 147, 242, 295, 303 |
| HhaI | GCGC | 1 cut(s) | 280 |
| Hin1II | CATG | 1 cut(s) | 197 |
| Hin6I | GCGC | 1 cut(s) | 278 |
| HinP1I | GCGC | 1 cut(s) | 278 |
| HinfI | GANTC | 2 cut(s) | 80, 203 |
| HpaII | CCGG | 4 cut(s) | 147, 242, 295, 303 |
| HphI | GGTGA | 2 cut(s) | 358, 422 |
| Hpy188I | TCNGA | 4 cut(s) | 23, 70, 231, 259 |
| HpyAV | CCTTC | 3 cut(s) | 19, 410, 446 |
| HpyCH4IV | ACGT | 1 cut(s) | 333 |
| HpyCH4V | TGCA | 1 cut(s) | 154 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 352, 361, 370, 379, 388, 429 |
| HpySE526I | ACGT | 1 cut(s) | 333 |
| Hsp92II | CATG | 1 cut(s) | 197 |
| HspAI | GCGC | 1 cut(s) | 278 |
| KroI | GCCGGC | 1 cut(s) | 146 |
| KroNI | GCCGGC | 1 cut(s) | 148 |
| Ksp22I | TGATCA | 1 cut(s) | 18 |
| Kzo9I | GATC | 4 cut(s) | 18, 39, 70, 163 |
| LmnI | GCTCC | 2 cut(s) | 224, 232 |
| Lsp1109I | GCAGC | 1 cut(s) | 391 |
| LweI | GCATC | 1 cut(s) | 147 |
| MaeI | CTAG | 1 cut(s) | 207 |
| MaeII | ACGT | 1 cut(s) | 333 |
| MalI | GATC | 4 cut(s) | 20, 41, 72, 165 |
| MbiI | CCGCTC | 3 cut(s) | 97, 325, 346 |
| MboI | GATC | 4 cut(s) | 18, 39, 70, 163 |
| MboII | GAAGA | 6 cut(s) | 170, 226, 229, 295, 468, 471 |
| MhlI | GDGCHC | 2 cut(s) | 229, 446 |
| MlyI | GAGTC | 1 cut(s) | 74 |
| MmeI | TCCRAC | 4 cut(s) | 48, 282, 365, 406 |
| MnlI | CCTC | 7 cut(s) | 154, 331, 379, 386, 401, 406, 427 |
| MroNI | GCCGGC | 1 cut(s) | 146 |
| MspI | CCGG | 4 cut(s) | 147, 242, 295, 303 |
| MspR9I | CCNGG | 3 cut(s) | 242, 303, 304 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 352, 361, 370, 379, 388, 429 |
| NaeI | GCCGGC | 1 cut(s) | 148 |
| NciI | CCSGG | 3 cut(s) | 242, 303, 304 |
| NdeII | GATC | 4 cut(s) | 18, 39, 70, 163 |
| NgoMIV | GCCGGC | 1 cut(s) | 146 |
| NlaIII | CATG | 1 cut(s) | 197 |
| NlaIV | GGNNCC | 1 cut(s) | 7 |
| NmeAIII | GCCGAG | 2 cut(s) | 338, 367 |
| NspI | RCATGY | 1 cut(s) | 197 |
| PaeR7I | CTCGAG | 1 cut(s) | 98 |
| PciI | ACATGT | 1 cut(s) | 193 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 255, 339 |
| PdiI | GCCGGC | 1 cut(s) | 148 |
| PfeI | GAWTC | 1 cut(s) | 203 |
| PkrI | GCNGC | 4 cut(s) | 324, 348, 381, 422 |
| PleI | GAGTC | 1 cut(s) | 74 |
| PmaCI | CACGTG | 1 cut(s) | 334 |
| PmlI | CACGTG | 1 cut(s) | 334 |
| PpsI | GAGTC | 1 cut(s) | 74 |
| Ppu21I | YACGTR | 1 cut(s) | 334 |
| PscI | ACATGT | 1 cut(s) | 193 |
| Psp124BI | GAGCTC | 1 cut(s) | 229 |
| PspCI | CACGTG | 1 cut(s) | 334 |
| PspFI | CCCAGC | 1 cut(s) | 307 |
| PspN4I | GGNNCC | 1 cut(s) | 7 |
| PspPI | GGNCC | 2 cut(s) | 292, 310 |
| PspXI | VCTCGAGB | 1 cut(s) | 98 |
| RsaI | GTAC | 1 cut(s) | 176 |
| RsaNI | GTAC | 1 cut(s) | 175 |
| SacI | GAGCTC | 1 cut(s) | 229 |
| SatI | GCNGC | 4 cut(s) | 323, 347, 380, 421 |
| Sau3AI | GATC | 4 cut(s) | 18, 39, 70, 163 |
| Sau96I | GGNCC | 2 cut(s) | 292, 310 |
| SchI | GAGTC | 1 cut(s) | 74 |
| ScrFI | CCNGG | 3 cut(s) | 242, 303, 304 |
| SduI | GDGCHC | 2 cut(s) | 229, 446 |
| SetI | ASST | 7 cut(s) | 173, 229, 237, 336, 366, 371, 412 |
| SfaNI | GCATC | 1 cut(s) | 147 |
| Sfr274I | CTCGAG | 1 cut(s) | 98 |
| SlaI | CTCGAG | 1 cut(s) | 98 |
| SmaI | CCCGGG | 1 cut(s) | 304 |
| SmlI | CTYRAG | 1 cut(s) | 98 |
| SmoI | CTYRAG | 1 cut(s) | 98 |
| SsiI | CCGC | 5 cut(s) | 95, 323, 346, 355, 420 |
| SspMI | CTAG | 1 cut(s) | 207 |
| SstI | GAGCTC | 1 cut(s) | 229 |
| StyD4I | CCNGG | 3 cut(s) | 240, 301, 302 |
| TaiI | ACGT | 1 cut(s) | 336 |
| TaqI | TCGA | 2 cut(s) | 83, 99 |
| TauI | GCSGC | 3 cut(s) | 325, 349, 423 |
| TfiI | GAWTC | 1 cut(s) | 203 |
| TscAI | CASTG | 1 cut(s) | 356 |
| TseI | GCWGC | 1 cut(s) | 379 |
| TspDTI | ATGAA | 2 cut(s) | 94, 284 |
| TspGWI | ACGGA | 1 cut(s) | 237 |
| TspMI | CCCGGG | 1 cut(s) | 302 |
| TspRI | CASTG | 1 cut(s) | 356 |
| XceI | RCATGY | 1 cut(s) | 197 |
| XhoI | CTCGAG | 1 cut(s) | 98 |
| XmaI | CCCGGG | 1 cut(s) | 302 |
| XspI | CTAG | 1 cut(s) | 207 |