transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 3 cut(s) | 162, 592, 613 |
| AciI | CCGC | 6 cut(s) | 162, 590, 608, 613, 616, 640 |
| AclWI | GGATC | 4 cut(s) | 301, 345, 438, 499 |
| AfaI | GTAC | 1 cut(s) | 443 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 153, 467, 575, 604, 636, 639 |
| AgsI | TTSAA | 3 cut(s) | 179, 184, 266 |
| AjnI | CCWGG | 1 cut(s) | 140 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 311, 343 |
| AluBI | AGCT | 5 cut(s) | 77, 138, 175, 438, 625 |
| AluI | AGCT | 5 cut(s) | 77, 138, 175, 438, 625 |
| Alw21I | GWGCWC | 1 cut(s) | 79 |
| Alw26I | GTCTC | 2 cut(s) | 221, 576 |
| AlwI | GGATC | 4 cut(s) | 301, 345, 438, 499 |
| Ama87I | CYCGRG | 2 cut(s) | 365, 569 |
| AoxI | GGCC | 4 cut(s) | 43, 165, 207, 577 |
| ApaI | GGGCCC | 1 cut(s) | 169 |
| AspLEI | GCGC | 1 cut(s) | 547 |
| AspS9I | GGNCC | 6 cut(s) | 44, 144, 165, 166, 208, 577 |
| AsuC2I | CCSGG | 4 cut(s) | 123, 350, 570, 571 |
| AsuHPI | GGTGA | 2 cut(s) | 619, 683 |
| AvaI | CYCGRG | 2 cut(s) | 365, 569 |
| AvaII | GGWCC | 1 cut(s) | 144 |
| BaeGI | GKGCMC | 1 cut(s) | 169 |
| BanII | GRGCYC | 2 cut(s) | 79, 169 |
| BauI | CACGAG | 2 cut(s) | 170, 218 |
| Bbv12I | GWGCWC | 1 cut(s) | 79 |
| BccI | CCATC | 1 cut(s) | 248 |
| BceAI | ACGGC | 1 cut(s) | 127 |
| BciT130I | CCWGG | 1 cut(s) | 142 |
| BclI | TGATCA | 1 cut(s) | 285 |
| BcnI | CCSGG | 4 cut(s) | 123, 350, 570, 571 |
| BcoDI | GTCTC | 2 cut(s) | 221, 576 |
| BfaI | CTAG | 1 cut(s) | 474 |
| BfoI | RGCGCY | 1 cut(s) | 548 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 206 |
| BisI | GCNGC | 3 cut(s) | 590, 614, 641 |
| BlpI | GCTNAGC | 1 cut(s) | 158 |
| BlsI | GCNGC | 3 cut(s) | 591, 615, 642 |
| Bme1390I | CCNGG | 5 cut(s) | 123, 142, 350, 570, 571 |
| Bme18I | GGWCC | 1 cut(s) | 144 |
| BmeT110I | CYCGRG | 2 cut(s) | 365, 569 |
| BmgT120I | GGNCC | 6 cut(s) | 44, 144, 165, 166, 208, 577 |
| BmiI | GGNNCC | 3 cut(s) | 166, 167, 274 |
| BmrFI | CCNGG | 5 cut(s) | 123, 142, 350, 570, 571 |
| BmrI | ACTGGG | 1 cut(s) | 307 |
| BmsI | GCATC | 2 cut(s) | 249, 414 |
| BmuI | ACTGGG | 1 cut(s) | 307 |
| BpmI | CTGGAG | 1 cut(s) | 124 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 158 |
| BpuMI | CCSGG | 4 cut(s) | 123, 350, 570, 571 |
| BsaBI | GATNNNNATC | 1 cut(s) | 239 |
| BsaI | GGTCTC | 1 cut(s) | 221 |
| BsaJI | CCNNGG | 2 cut(s) | 569, 634 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 649, 679 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 153, 467, 575, 604, 636, 639 |
| Bse118I | RCCGGY | 1 cut(s) | 413 |
| Bse1I | ACTGG | 1 cut(s) | 302 |
| Bse3DI | GCAATG | 1 cut(s) | 408 |
| Bse8I | GATNNNNATC | 1 cut(s) | 239 |
| BseBI | CCWGG | 1 cut(s) | 142 |
| BseDI | CCNNGG | 2 cut(s) | 569, 634 |
| BseGI | GGATG | 2 cut(s) | 240, 594 |
| BseJI | GATNNNNATC | 1 cut(s) | 239 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 153, 467, 575, 604, 636, 639 |
| BseMI | GCAATG | 1 cut(s) | 408 |
| BseMII | CTCAG | 1 cut(s) | 149 |
| BseNI | ACTGG | 1 cut(s) | 302 |
| BseSI | GKGCMC | 1 cut(s) | 169 |
| BseYI | CCCAGC | 1 cut(s) | 574 |
| BsgI | GTGCAG | 1 cut(s) | 440 |
| BshFI | GGCC | 4 cut(s) | 45, 167, 209, 579 |
| BsiHKAI | GWGCWC | 1 cut(s) | 79 |
| BsiHKCI | CYCGRG | 2 cut(s) | 365, 569 |
| BsiSI | CCGG | 5 cut(s) | 42, 123, 350, 414, 570 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 153, 467, 575, 604, 636, 639 |
| BsmAI | GTCTC | 2 cut(s) | 221, 576 |
| BsnI | GGCC | 4 cut(s) | 45, 167, 209, 579 |
| Bso31I | GGTCTC | 1 cut(s) | 221 |
| BsoBI | CYCGRG | 2 cut(s) | 365, 569 |
| Bsp120I | GGGCCC | 1 cut(s) | 165 |
| Bsp1286I | GDGCHC | 2 cut(s) | 79, 169 |
| Bsp143I | GATC | 8 cut(s) | 92, 222, 234, 285, 306, 337, 430, 491 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 158 |
| BspACI | CCGC | 6 cut(s) | 162, 590, 608, 613, 616, 640 |
| BspANI | GGCC | 4 cut(s) | 45, 167, 209, 579 |
| BspCNI | CTCAG | 1 cut(s) | 150 |
| BspLI | GGNNCC | 3 cut(s) | 166, 167, 274 |
| BspPI | GGATC | 4 cut(s) | 301, 345, 438, 499 |
| BspTNI | GGTCTC | 1 cut(s) | 221 |
| BsrBI | CCGCTC | 3 cut(s) | 162, 592, 613 |
| BsrDI | GCAATG | 1 cut(s) | 408 |
| BsrFI | RCCGGY | 1 cut(s) | 413 |
| BsrI | ACTGG | 1 cut(s) | 302 |
| BssAI | RCCGGY | 1 cut(s) | 413 |
| BssECI | CCNNGG | 2 cut(s) | 569, 634 |
| BssMI | GATC | 8 cut(s) | 92, 222, 234, 285, 306, 337, 430, 491 |
| BssSI | CACGAG | 2 cut(s) | 170, 218 |
| BssT1I | CCWWGG | 1 cut(s) | 634 |
| Bst2BI | CACGAG | 2 cut(s) | 170, 218 |
| Bst2UI | CCWGG | 1 cut(s) | 142 |
| Bst6I | CTCTTC | 1 cut(s) | 420 |
| BstC8I | GCNNGC | 3 cut(s) | 315, 415, 419 |
| BstDEI | CTNAG | 1 cut(s) | 158 |
| BstF5I | GGATG | 2 cut(s) | 240, 594 |
| BstH2I | RGCGCY | 1 cut(s) | 548 |
| BstHHI | GCGC | 1 cut(s) | 547 |
| BstKTI | GATC | 8 cut(s) | 95, 225, 237, 288, 309, 340, 433, 494 |
| BstMAI | GTCTC | 2 cut(s) | 221, 576 |
| BstMBI | GATC | 8 cut(s) | 92, 222, 234, 285, 306, 337, 430, 491 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 206, 622, 649 |
| BstNI | CCWGG | 1 cut(s) | 142 |
| BstSCI | CCNGG | 5 cut(s) | 121, 140, 348, 568, 569 |
| BstSLI | GKGCMC | 1 cut(s) | 169 |
| BstX2I | RGATCY | 1 cut(s) | 491 |
| BstYI | RGATCY | 1 cut(s) | 491 |
| BsuRI | GGCC | 4 cut(s) | 45, 167, 209, 579 |
| BtsCI | GGATG | 2 cut(s) | 240, 594 |
| Cac8I | GCNNGC | 3 cut(s) | 315, 415, 419 |
| CfoI | GCGC | 1 cut(s) | 547 |
| Cfr10I | RCCGGY | 1 cut(s) | 413 |
| Cfr13I | GGNCC | 6 cut(s) | 44, 144, 165, 166, 208, 577 |
| Cfr9I | CCCGGG | 1 cut(s) | 569 |
| Csp6I | GTAC | 1 cut(s) | 442 |
| CviAII | CATG | 1 cut(s) | 601 |
| CviQI | GTAC | 1 cut(s) | 442 |
| DdeI | CTNAG | 1 cut(s) | 158 |
| DpnI | GATC | 8 cut(s) | 94, 224, 236, 287, 308, 339, 432, 493 |
| DpnII | GATC | 8 cut(s) | 92, 222, 234, 285, 306, 337, 430, 491 |
| Eam1104I | CTCTTC | 1 cut(s) | 420 |
| EarI | CTCTTC | 1 cut(s) | 420 |
| EciI | GGCGGA | 1 cut(s) | 623 |
| Ecl136II | GAGCTC | 1 cut(s) | 77 |
| Eco130I | CCWWGG | 1 cut(s) | 634 |
| Eco24I | GRGCYC | 2 cut(s) | 79, 169 |
| Eco31I | GGTCTC | 1 cut(s) | 221 |
| Eco47I | GGWCC | 1 cut(s) | 144 |
| Eco53kI | GAGCTC | 1 cut(s) | 77 |
| Eco88I | CYCGRG | 2 cut(s) | 365, 569 |
| EcoICRI | GAGCTC | 1 cut(s) | 77 |
| EcoO109I | RGGNCCY | 2 cut(s) | 144, 165 |
| EcoRII | CCWGG | 1 cut(s) | 140 |
| EcoT14I | CCWWGG | 1 cut(s) | 634 |
| EcoT38I | GRGCYC | 2 cut(s) | 79, 169 |
| ErhI | CCWWGG | 1 cut(s) | 634 |
| FaeI | CATG | 1 cut(s) | 604 |
| FaiI | YATR | 1 cut(s) | 602 |
| FatI | CATG | 1 cut(s) | 600 |
| FauI | CCCGC | 2 cut(s) | 155, 609 |
| FbaI | TGATCA | 1 cut(s) | 285 |
| Fnu4HI | GCNGC | 3 cut(s) | 590, 614, 641 |
| FokI | GGATG | 2 cut(s) | 227, 581 |
| FriOI | GRGCYC | 2 cut(s) | 79, 169 |
| Fsp4HI | GCNGC | 3 cut(s) | 590, 614, 641 |
| FspBI | CTAG | 1 cut(s) | 474 |
| GlaI | GCGC | 1 cut(s) | 546 |
| GluI | GCNGC | 3 cut(s) | 590, 614, 641 |
| GsaI | CCCAGC | 1 cut(s) | 578 |
| GsuI | CTGGAG | 1 cut(s) | 124 |
| HaeII | RGCGCY | 1 cut(s) | 548 |
| HaeIII | GGCC | 4 cut(s) | 45, 167, 209, 579 |
| HapII | CCGG | 5 cut(s) | 42, 123, 350, 414, 570 |
| HhaI | GCGC | 1 cut(s) | 547 |
| Hin1II | CATG | 1 cut(s) | 604 |
| Hin6I | GCGC | 1 cut(s) | 545 |
| HinP1I | GCGC | 1 cut(s) | 545 |
| HinfI | GANTC | 2 cut(s) | 11, 521 |
| HpaII | CCGG | 5 cut(s) | 42, 123, 350, 414, 570 |
| HphI | GGTGA | 2 cut(s) | 619, 683 |
| Hpy188I | TCNGA | 5 cut(s) | 74, 290, 337, 498, 526 |
| Hpy188III | TCNNGA | 2 cut(s) | 226, 263 |
| Hpy99I | CGWCG | 1 cut(s) | 104 |
| HpyAV | CCTTC | 3 cut(s) | 76, 671, 677 |
| HpyCH4V | TGCA | 2 cut(s) | 240, 421 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 206, 622, 649 |
| HpyF3I | CTNAG | 1 cut(s) | 158 |
| Hsp92II | CATG | 1 cut(s) | 604 |
| HspAI | GCGC | 1 cut(s) | 545 |
| KroI | GCCGGC | 1 cut(s) | 413 |
| KroNI | GCCGGC | 1 cut(s) | 415 |
| Ksp22I | TGATCA | 1 cut(s) | 285 |
| Kzo9I | GATC | 8 cut(s) | 92, 222, 234, 285, 306, 337, 430, 491 |
| LmnI | GCTCC | 2 cut(s) | 143, 610 |
| LweI | GCATC | 2 cut(s) | 249, 414 |
| MaeI | CTAG | 1 cut(s) | 474 |
| MalI | GATC | 8 cut(s) | 94, 224, 236, 287, 308, 339, 432, 493 |
| MbiI | CCGCTC | 3 cut(s) | 162, 592, 613 |
| MboI | GATC | 8 cut(s) | 92, 222, 234, 285, 306, 337, 430, 491 |
| MboII | GAAGA | 9 cut(s) | 45, 51, 54, 61, 437, 493, 562, 699, 702 |
| MflI | RGATCY | 1 cut(s) | 491 |
| MhlI | GDGCHC | 2 cut(s) | 79, 169 |
| MluCI | AATT | 1 cut(s) | 179 |
| MlyI | GAGTC | 1 cut(s) | 20 |
| MmeI | TCCRAC | 3 cut(s) | 315, 549, 626 |
| MnlI | CCTC | 9 cut(s) | 157, 199, 286, 421, 598, 640, 647, 662, 667 |
| MroNI | GCCGGC | 1 cut(s) | 413 |
| MslI | CAYNNNNRTG | 1 cut(s) | 599 |
| MspI | CCGG | 5 cut(s) | 42, 123, 350, 414, 570 |
| MspR9I | CCNGG | 5 cut(s) | 123, 142, 350, 570, 571 |
| MvaI | CCWGG | 1 cut(s) | 142 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 206, 622, 649 |
| NaeI | GCCGGC | 1 cut(s) | 415 |
| NciI | CCSGG | 4 cut(s) | 123, 350, 570, 571 |
| NdeII | GATC | 8 cut(s) | 92, 222, 234, 285, 306, 337, 430, 491 |
| NgoMIV | GCCGGC | 1 cut(s) | 413 |
| NlaIII | CATG | 1 cut(s) | 604 |
| NlaIV | GGNNCC | 3 cut(s) | 166, 167, 274 |
| NmeAIII | GCCGAG | 1 cut(s) | 605 |
| PaeR7I | CTCGAG | 1 cut(s) | 365 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 522 |
| PdiI | GCCGGC | 1 cut(s) | 415 |
| PfeI | GAWTC | 1 cut(s) | 521 |
| PfoI | TCCNGGA | 1 cut(s) | 140 |
| PkrI | GCNGC | 3 cut(s) | 591, 615, 642 |
| PleI | GAGTC | 1 cut(s) | 19 |
| PpsI | GAGTC | 1 cut(s) | 19 |
| PpuMI | RGGWCCY | 1 cut(s) | 144 |
| Psp124BI | GAGCTC | 1 cut(s) | 79 |
| Psp5II | RGGWCCY | 1 cut(s) | 144 |
| Psp6I | CCWGG | 1 cut(s) | 140 |
| PspFI | CCCAGC | 1 cut(s) | 574 |
| PspGI | CCWGG | 1 cut(s) | 140 |
| PspN4I | GGNNCC | 3 cut(s) | 166, 167, 274 |
| PspOMI | GGGCCC | 1 cut(s) | 165 |
| PspPI | GGNCC | 6 cut(s) | 44, 144, 165, 166, 208, 577 |
| PspPPI | RGGWCCY | 1 cut(s) | 144 |
| PspXI | VCTCGAGB | 1 cut(s) | 365 |
| PsuI | RGATCY | 1 cut(s) | 491 |
| RsaI | GTAC | 1 cut(s) | 443 |
| RsaNI | GTAC | 1 cut(s) | 442 |
| RseI | CAYNNNNRTG | 1 cut(s) | 599 |
| SacI | GAGCTC | 1 cut(s) | 79 |
| SatI | GCNGC | 3 cut(s) | 590, 614, 641 |
| Sau3AI | GATC | 8 cut(s) | 92, 222, 234, 285, 306, 337, 430, 491 |
| Sau96I | GGNCC | 6 cut(s) | 44, 144, 165, 166, 208, 577 |
| SchI | GAGTC | 1 cut(s) | 20 |
| ScrFI | CCNGG | 5 cut(s) | 123, 142, 350, 570, 571 |
| SduI | GDGCHC | 2 cut(s) | 79, 169 |
| SfaNI | GCATC | 2 cut(s) | 249, 414 |
| Sfr274I | CTCGAG | 1 cut(s) | 365 |
| SinI | GGWCC | 1 cut(s) | 144 |
| SlaI | CTCGAG | 1 cut(s) | 365 |
| SmaI | CCCGGG | 1 cut(s) | 571 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 599 |
| SmlI | CTYRAG | 1 cut(s) | 365 |
| SmoI | CTYRAG | 1 cut(s) | 365 |
| Sse9I | AATT | 1 cut(s) | 179 |
| SsiI | CCGC | 6 cut(s) | 162, 590, 608, 613, 616, 640 |
| SspMI | CTAG | 1 cut(s) | 474 |
| SstI | GAGCTC | 1 cut(s) | 79 |
| StyD4I | CCNGG | 5 cut(s) | 121, 140, 348, 568, 569 |
| StyI | CCWWGG | 1 cut(s) | 634 |
| TaqI | TCGA | 5 cut(s) | 9, 91, 225, 252, 366 |
| TasI | AATT | 1 cut(s) | 179 |
| TauI | GCSGC | 3 cut(s) | 592, 616, 643 |
| TfiI | GAWTC | 1 cut(s) | 521 |
| TspDTI | ATGAA | 3 cut(s) | 45, 361, 551 |
| TspGWI | ACGGA | 1 cut(s) | 504 |
| TspMI | CCCGGG | 1 cut(s) | 569 |
| VpaK11BI | GGWCC | 1 cut(s) | 144 |
| XhoI | CTCGAG | 1 cut(s) | 365 |
| XmaI | CCCGGG | 1 cut(s) | 569 |
| XspI | CTAG | 1 cut(s) | 474 |