Rmu_sc0000637.1_g000017
BHLH Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000637.1
Physical Location & Seq
Reverse (-)
77079 .. 77780
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000637.1_g000017.1.cds

Sequence Viewer

Length: 702 bp
atgccaatcgagtcatttttttgtctgttattttttttttccggccctgtttcttcatcttcttccttcttccgagctcactctctcactcgatctttcgtcgtcaaggacggctctattcccggcaaggctttcagctccaggacctcaatctggctgagcggggcccacgagcttcaattcaacaactacgagagagccaaagaggcccaaatccacgagatcgagaccttgatctgcatcccaactttcgatggtgttcttgaaatgggttcctctgttttgatcagagagaactgggggttgatccagcaagccaagtcgttgttcgggtcggatcagcccgacccggaaacaagattgctcgagttcatcaaccagaacttctccatttttgacatcggcatcattgccggcgtgcaggaagaggatcacagctcgtacaatgacaacaagaaacctgtttttggttctagcaagaagaataacggatctctgaacccaaacccagacttcgcagattccgactgccagatgaaaagagcgccgaagaaacggggcaggaaacccgggctgggccgagacacgccgctcatccacatggaggcggagcggcgggagaagctcacctcccaagggcggcgttggaagcgagggagtgagcgtggaggtgaggaaggcgaaggaagaagaaagagataa

Protein Analysis

233

Amino Acids

26.28

Weight (kDa)

8.99

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 162, 592, 613
AciI CCGC 6 cut(s) 162, 590, 608, 613, 616, 640
AclWI GGATC 4 cut(s) 301, 345, 438, 499
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 6 cut(s) 153, 467, 575, 604, 636, 639
AgsI TTSAA 3 cut(s) 179, 184, 266
AjnI CCWGG 1 cut(s) 140
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AluBI AGCT 5 cut(s) 77, 138, 175, 438, 625
AluI AGCT 5 cut(s) 77, 138, 175, 438, 625
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 2 cut(s) 221, 576
AlwI GGATC 4 cut(s) 301, 345, 438, 499
Ama87I CYCGRG 2 cut(s) 365, 569
AoxI GGCC 4 cut(s) 43, 165, 207, 577
ApaI GGGCCC 1 cut(s) 169
AspLEI GCGC 1 cut(s) 547
AspS9I GGNCC 6 cut(s) 44, 144, 165, 166, 208, 577
AsuC2I CCSGG 4 cut(s) 123, 350, 570, 571
AsuHPI GGTGA 2 cut(s) 619, 683
AvaI CYCGRG 2 cut(s) 365, 569
AvaII GGWCC 1 cut(s) 144
BaeGI GKGCMC 1 cut(s) 169
BanII GRGCYC 2 cut(s) 79, 169
BauI CACGAG 2 cut(s) 170, 218
Bbv12I GWGCWC 1 cut(s) 79
BccI CCATC 1 cut(s) 248
BceAI ACGGC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 142
BclI TGATCA 1 cut(s) 285
BcnI CCSGG 4 cut(s) 123, 350, 570, 571
BcoDI GTCTC 2 cut(s) 221, 576
BfaI CTAG 1 cut(s) 474
BfoI RGCGCY 1 cut(s) 548
BglI GCCNNNNNGGC 1 cut(s) 206
BisI GCNGC 3 cut(s) 590, 614, 641
BlpI GCTNAGC 1 cut(s) 158
BlsI GCNGC 3 cut(s) 591, 615, 642
Bme1390I CCNGG 5 cut(s) 123, 142, 350, 570, 571
Bme18I GGWCC 1 cut(s) 144
BmeT110I CYCGRG 2 cut(s) 365, 569
BmgT120I GGNCC 6 cut(s) 44, 144, 165, 166, 208, 577
BmiI GGNNCC 3 cut(s) 166, 167, 274
BmrFI CCNGG 5 cut(s) 123, 142, 350, 570, 571
BmrI ACTGGG 1 cut(s) 307
BmsI GCATC 2 cut(s) 249, 414
BmuI ACTGGG 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 124
Bpu1102I GCTNAGC 1 cut(s) 158
BpuMI CCSGG 4 cut(s) 123, 350, 570, 571
BsaBI GATNNNNATC 1 cut(s) 239
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 2 cut(s) 569, 634
BsaXI ACNNNNNCTCC 2 cut(s) 649, 679
Bsc4I CCNNNNNNNGG 6 cut(s) 153, 467, 575, 604, 636, 639
Bse118I RCCGGY 1 cut(s) 413
Bse1I ACTGG 1 cut(s) 302
Bse3DI GCAATG 1 cut(s) 408
Bse8I GATNNNNATC 1 cut(s) 239
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 2 cut(s) 569, 634
BseGI GGATG 2 cut(s) 240, 594
BseJI GATNNNNATC 1 cut(s) 239
BseLI CCNNNNNNNGG 6 cut(s) 153, 467, 575, 604, 636, 639
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 302
BseSI GKGCMC 1 cut(s) 169
BseYI CCCAGC 1 cut(s) 574
BsgI GTGCAG 1 cut(s) 440
BshFI GGCC 4 cut(s) 45, 167, 209, 579
BsiHKAI GWGCWC 1 cut(s) 79
BsiHKCI CYCGRG 2 cut(s) 365, 569
BsiSI CCGG 5 cut(s) 42, 123, 350, 414, 570
BslI CCNNNNNNNGG 6 cut(s) 153, 467, 575, 604, 636, 639
BsmAI GTCTC 2 cut(s) 221, 576
BsnI GGCC 4 cut(s) 45, 167, 209, 579
Bso31I GGTCTC 1 cut(s) 221
BsoBI CYCGRG 2 cut(s) 365, 569
Bsp120I GGGCCC 1 cut(s) 165
Bsp1286I GDGCHC 2 cut(s) 79, 169
Bsp143I GATC 8 cut(s) 92, 222, 234, 285, 306, 337, 430, 491
Bsp1720I GCTNAGC 1 cut(s) 158
BspACI CCGC 6 cut(s) 162, 590, 608, 613, 616, 640
BspANI GGCC 4 cut(s) 45, 167, 209, 579
BspCNI CTCAG 1 cut(s) 150
BspLI GGNNCC 3 cut(s) 166, 167, 274
BspPI GGATC 4 cut(s) 301, 345, 438, 499
BspTNI GGTCTC 1 cut(s) 221
BsrBI CCGCTC 3 cut(s) 162, 592, 613
BsrDI GCAATG 1 cut(s) 408
BsrFI RCCGGY 1 cut(s) 413
BsrI ACTGG 1 cut(s) 302
BssAI RCCGGY 1 cut(s) 413
BssECI CCNNGG 2 cut(s) 569, 634
BssMI GATC 8 cut(s) 92, 222, 234, 285, 306, 337, 430, 491
BssSI CACGAG 2 cut(s) 170, 218
BssT1I CCWWGG 1 cut(s) 634
Bst2BI CACGAG 2 cut(s) 170, 218
Bst2UI CCWGG 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 420
BstC8I GCNNGC 3 cut(s) 315, 415, 419
BstDEI CTNAG 1 cut(s) 158
BstF5I GGATG 2 cut(s) 240, 594
BstH2I RGCGCY 1 cut(s) 548
BstHHI GCGC 1 cut(s) 547
BstKTI GATC 8 cut(s) 95, 225, 237, 288, 309, 340, 433, 494
BstMAI GTCTC 2 cut(s) 221, 576
BstMBI GATC 8 cut(s) 92, 222, 234, 285, 306, 337, 430, 491
BstMWI GCNNNNNNNGC 3 cut(s) 206, 622, 649
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 5 cut(s) 121, 140, 348, 568, 569
BstSLI GKGCMC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 491
BstYI RGATCY 1 cut(s) 491
BsuRI GGCC 4 cut(s) 45, 167, 209, 579
BtsCI GGATG 2 cut(s) 240, 594
Cac8I GCNNGC 3 cut(s) 315, 415, 419
CfoI GCGC 1 cut(s) 547
Cfr10I RCCGGY 1 cut(s) 413
Cfr13I GGNCC 6 cut(s) 44, 144, 165, 166, 208, 577
Cfr9I CCCGGG 1 cut(s) 569
Csp6I GTAC 1 cut(s) 442
CviAII CATG 1 cut(s) 601
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 1 cut(s) 158
DpnI GATC 8 cut(s) 94, 224, 236, 287, 308, 339, 432, 493
DpnII GATC 8 cut(s) 92, 222, 234, 285, 306, 337, 430, 491
Eam1104I CTCTTC 1 cut(s) 420
EarI CTCTTC 1 cut(s) 420
EciI GGCGGA 1 cut(s) 623
Ecl136II GAGCTC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 634
Eco24I GRGCYC 2 cut(s) 79, 169
Eco31I GGTCTC 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 144
Eco53kI GAGCTC 1 cut(s) 77
Eco88I CYCGRG 2 cut(s) 365, 569
EcoICRI GAGCTC 1 cut(s) 77
EcoO109I RGGNCCY 2 cut(s) 144, 165
EcoRII CCWGG 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 634
EcoT38I GRGCYC 2 cut(s) 79, 169
ErhI CCWWGG 1 cut(s) 634
FaeI CATG 1 cut(s) 604
FaiI YATR 1 cut(s) 602
FatI CATG 1 cut(s) 600
FauI CCCGC 2 cut(s) 155, 609
FbaI TGATCA 1 cut(s) 285
Fnu4HI GCNGC 3 cut(s) 590, 614, 641
FokI GGATG 2 cut(s) 227, 581
FriOI GRGCYC 2 cut(s) 79, 169
Fsp4HI GCNGC 3 cut(s) 590, 614, 641
FspBI CTAG 1 cut(s) 474
GlaI GCGC 1 cut(s) 546
GluI GCNGC 3 cut(s) 590, 614, 641
GsaI CCCAGC 1 cut(s) 578
GsuI CTGGAG 1 cut(s) 124
HaeII RGCGCY 1 cut(s) 548
HaeIII GGCC 4 cut(s) 45, 167, 209, 579
HapII CCGG 5 cut(s) 42, 123, 350, 414, 570
HhaI GCGC 1 cut(s) 547
Hin1II CATG 1 cut(s) 604
Hin6I GCGC 1 cut(s) 545
HinP1I GCGC 1 cut(s) 545
HinfI GANTC 2 cut(s) 11, 521
HpaII CCGG 5 cut(s) 42, 123, 350, 414, 570
HphI GGTGA 2 cut(s) 619, 683
Hpy188I TCNGA 5 cut(s) 74, 290, 337, 498, 526
Hpy188III TCNNGA 2 cut(s) 226, 263
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 3 cut(s) 76, 671, 677
HpyCH4V TGCA 2 cut(s) 240, 421
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 622, 649
HpyF3I CTNAG 1 cut(s) 158
Hsp92II CATG 1 cut(s) 604
HspAI GCGC 1 cut(s) 545
KroI GCCGGC 1 cut(s) 413
KroNI GCCGGC 1 cut(s) 415
Ksp22I TGATCA 1 cut(s) 285
Kzo9I GATC 8 cut(s) 92, 222, 234, 285, 306, 337, 430, 491
LmnI GCTCC 2 cut(s) 143, 610
LweI GCATC 2 cut(s) 249, 414
MaeI CTAG 1 cut(s) 474
MalI GATC 8 cut(s) 94, 224, 236, 287, 308, 339, 432, 493
MbiI CCGCTC 3 cut(s) 162, 592, 613
MboI GATC 8 cut(s) 92, 222, 234, 285, 306, 337, 430, 491
MboII GAAGA 9 cut(s) 45, 51, 54, 61, 437, 493, 562, 699, 702
MflI RGATCY 1 cut(s) 491
MhlI GDGCHC 2 cut(s) 79, 169
MluCI AATT 1 cut(s) 179
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 3 cut(s) 315, 549, 626
MnlI CCTC 9 cut(s) 157, 199, 286, 421, 598, 640, 647, 662, 667
MroNI GCCGGC 1 cut(s) 413
MslI CAYNNNNRTG 1 cut(s) 599
MspI CCGG 5 cut(s) 42, 123, 350, 414, 570
MspR9I CCNGG 5 cut(s) 123, 142, 350, 570, 571
MvaI CCWGG 1 cut(s) 142
MwoI GCNNNNNNNGC 3 cut(s) 206, 622, 649
NaeI GCCGGC 1 cut(s) 415
NciI CCSGG 4 cut(s) 123, 350, 570, 571
NdeII GATC 8 cut(s) 92, 222, 234, 285, 306, 337, 430, 491
NgoMIV GCCGGC 1 cut(s) 413
NlaIII CATG 1 cut(s) 604
NlaIV GGNNCC 3 cut(s) 166, 167, 274
NmeAIII GCCGAG 1 cut(s) 605
PaeR7I CTCGAG 1 cut(s) 365
PcsI WCGNNNNNNNCGW 1 cut(s) 522
PdiI GCCGGC 1 cut(s) 415
PfeI GAWTC 1 cut(s) 521
PfoI TCCNGGA 1 cut(s) 140
PkrI GCNGC 3 cut(s) 591, 615, 642
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PpuMI RGGWCCY 1 cut(s) 144
Psp124BI GAGCTC 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 140
PspFI CCCAGC 1 cut(s) 574
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 3 cut(s) 166, 167, 274
PspOMI GGGCCC 1 cut(s) 165
PspPI GGNCC 6 cut(s) 44, 144, 165, 166, 208, 577
PspPPI RGGWCCY 1 cut(s) 144
PspXI VCTCGAGB 1 cut(s) 365
PsuI RGATCY 1 cut(s) 491
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
RseI CAYNNNNRTG 1 cut(s) 599
SacI GAGCTC 1 cut(s) 79
SatI GCNGC 3 cut(s) 590, 614, 641
Sau3AI GATC 8 cut(s) 92, 222, 234, 285, 306, 337, 430, 491
Sau96I GGNCC 6 cut(s) 44, 144, 165, 166, 208, 577
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 5 cut(s) 123, 142, 350, 570, 571
SduI GDGCHC 2 cut(s) 79, 169
SfaNI GCATC 2 cut(s) 249, 414
Sfr274I CTCGAG 1 cut(s) 365
SinI GGWCC 1 cut(s) 144
SlaI CTCGAG 1 cut(s) 365
SmaI CCCGGG 1 cut(s) 571
SmiMI CAYNNNNRTG 1 cut(s) 599
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 1 cut(s) 179
SsiI CCGC 6 cut(s) 162, 590, 608, 613, 616, 640
SspMI CTAG 1 cut(s) 474
SstI GAGCTC 1 cut(s) 79
StyD4I CCNGG 5 cut(s) 121, 140, 348, 568, 569
StyI CCWWGG 1 cut(s) 634
TaqI TCGA 5 cut(s) 9, 91, 225, 252, 366
TasI AATT 1 cut(s) 179
TauI GCSGC 3 cut(s) 592, 616, 643
TfiI GAWTC 1 cut(s) 521
TspDTI ATGAA 3 cut(s) 45, 361, 551
TspGWI ACGGA 1 cut(s) 504
TspMI CCCGGG 1 cut(s) 569
VpaK11BI GGWCC 1 cut(s) 144
XhoI CTCGAG 1 cut(s) 365
XmaI CCCGGG 1 cut(s) 569
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.