transcription factor
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| bHLH-MYC_N | PF14215 | 24 - 112 | 4.4e-24 | bHLH-MYC and R2R3-MYB transcription factors N-terminal |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 370 |
| AccIII | TCCGGA | 1 cut(s) | 78 |
| AciI | CCGC | 1 cut(s) | 368 |
| AclWI | GGATC | 3 cut(s) | 236, 307, 351 |
| AcuI | CTGAAG | 1 cut(s) | 167 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 78, 159 |
| AgsI | TTSAA | 2 cut(s) | 190, 272 |
| AjnI | CCWGG | 1 cut(s) | 127 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 317, 349 |
| AluBI | AGCT | 1 cut(s) | 181 |
| AluI | AGCT | 1 cut(s) | 181 |
| Alw21I | GWGCWC | 1 cut(s) | 268 |
| Alw26I | GTCTC | 1 cut(s) | 227 |
| AlwI | GGATC | 3 cut(s) | 236, 307, 351 |
| Ama87I | CYCGRG | 1 cut(s) | 371 |
| Aor13HI | TCCGGA | 1 cut(s) | 78 |
| AoxI | GGCC | 3 cut(s) | 135, 171, 213 |
| ApaI | GGGCCC | 1 cut(s) | 175 |
| AspS9I | GGNCC | 4 cut(s) | 150, 171, 172, 214 |
| AsuC2I | CCSGG | 2 cut(s) | 148, 356 |
| AvaI | CYCGRG | 1 cut(s) | 371 |
| AvaII | GGWCC | 1 cut(s) | 150 |
| BaeGI | GKGCMC | 1 cut(s) | 175 |
| BanII | GRGCYC | 1 cut(s) | 175 |
| BauI | CACGAG | 1 cut(s) | 176 |
| Bbv12I | GWGCWC | 1 cut(s) | 268 |
| BceAI | ACGGC | 2 cut(s) | 92, 133 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 121, 155 |
| BciT130I | CCWGG | 1 cut(s) | 129 |
| BcnI | CCSGG | 2 cut(s) | 148, 356 |
| BcoDI | GTCTC | 1 cut(s) | 227 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 212 |
| Bme1390I | CCNGG | 3 cut(s) | 129, 148, 356 |
| Bme18I | GGWCC | 1 cut(s) | 150 |
| BmeT110I | CYCGRG | 1 cut(s) | 371 |
| BmgT120I | GGNCC | 4 cut(s) | 150, 171, 172, 214 |
| BmiI | GGNNCC | 5 cut(s) | 145, 151, 172, 173, 280 |
| BmrFI | CCNGG | 3 cut(s) | 129, 148, 356 |
| BmrI | ACTGGG | 1 cut(s) | 313 |
| BmsI | GCATC | 1 cut(s) | 255 |
| BmuI | ACTGGG | 1 cut(s) | 313 |
| BpuMI | CCSGG | 2 cut(s) | 148, 356 |
| BsaBI | GATNNNNATC | 1 cut(s) | 245 |
| BsaI | GGTCTC | 1 cut(s) | 227 |
| BsaJI | CCNNGG | 1 cut(s) | 223 |
| BsaWI | WCCGGW | 3 cut(s) | 78, 284, 384 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 78, 159 |
| Bse1I | ACTGG | 1 cut(s) | 308 |
| Bse8I | GATNNNNATC | 1 cut(s) | 245 |
| BseAI | TCCGGA | 1 cut(s) | 78 |
| BseBI | CCWGG | 1 cut(s) | 129 |
| BseDI | CCNNGG | 1 cut(s) | 223 |
| BseGI | GGATG | 1 cut(s) | 246 |
| BseJI | GATNNNNATC | 1 cut(s) | 245 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 78, 159 |
| BseMII | CTCAG | 2 cut(s) | 21, 155 |
| BseNI | ACTGG | 1 cut(s) | 308 |
| BseSI | GKGCMC | 1 cut(s) | 175 |
| BshFI | GGCC | 3 cut(s) | 137, 173, 215 |
| BsiHKAI | GWGCWC | 1 cut(s) | 268 |
| BsiHKCI | CYCGRG | 1 cut(s) | 371 |
| BsiSI | CCGG | 5 cut(s) | 79, 147, 285, 356, 385 |
| BslFI | GGGAC | 2 cut(s) | 128, 163 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 78, 159 |
| BsmAI | GTCTC | 1 cut(s) | 227 |
| BsmFI | GGGAC | 2 cut(s) | 128, 163 |
| BsnI | GGCC | 3 cut(s) | 137, 173, 215 |
| Bso31I | GGTCTC | 1 cut(s) | 227 |
| BsoBI | CYCGRG | 1 cut(s) | 371 |
| Bsp120I | GGGCCC | 1 cut(s) | 171 |
| Bsp1286I | GDGCHC | 2 cut(s) | 175, 268 |
| Bsp13I | TCCGGA | 1 cut(s) | 78 |
| Bsp143I | GATC | 5 cut(s) | 98, 228, 240, 312, 343 |
| BspACI | CCGC | 1 cut(s) | 368 |
| BspANI | GGCC | 3 cut(s) | 137, 173, 215 |
| BspCNI | CTCAG | 2 cut(s) | 20, 156 |
| BspEI | TCCGGA | 1 cut(s) | 78 |
| BspLI | GGNNCC | 5 cut(s) | 145, 151, 172, 173, 280 |
| BspPI | GGATC | 3 cut(s) | 236, 307, 351 |
| BspTNI | GGTCTC | 1 cut(s) | 227 |
| BsrBI | CCGCTC | 1 cut(s) | 370 |
| BsrI | ACTGG | 1 cut(s) | 308 |
| BssECI | CCNNGG | 1 cut(s) | 223 |
| BssMI | GATC | 5 cut(s) | 98, 228, 240, 312, 343 |
| BssSI | CACGAG | 1 cut(s) | 176 |
| Bst2BI | CACGAG | 1 cut(s) | 176 |
| Bst2UI | CCWGG | 1 cut(s) | 129 |
| Bst4CI | ACNGT | 1 cut(s) | 263 |
| BstC8I | GCNNGC | 1 cut(s) | 321 |
| BstDEI | CTNAG | 2 cut(s) | 7, 164 |
| BstDSI | CCRYGG | 1 cut(s) | 223 |
| BstF5I | GGATG | 1 cut(s) | 246 |
| BstKTI | GATC | 5 cut(s) | 101, 231, 243, 315, 346 |
| BstMAI | GTCTC | 1 cut(s) | 227 |
| BstMBI | GATC | 5 cut(s) | 98, 228, 240, 312, 343 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 212 |
| BstNI | CCWGG | 1 cut(s) | 129 |
| BstSCI | CCNGG | 3 cut(s) | 127, 146, 354 |
| BstSLI | GKGCMC | 1 cut(s) | 175 |
| BsuRI | GGCC | 3 cut(s) | 137, 173, 215 |
| BtgI | CCRYGG | 1 cut(s) | 223 |
| BtsCI | GGATG | 1 cut(s) | 246 |
| Cac8I | GCNNGC | 1 cut(s) | 321 |
| Cfr13I | GGNCC | 4 cut(s) | 150, 171, 172, 214 |
| DdeI | CTNAG | 2 cut(s) | 7, 164 |
| DpnI | GATC | 5 cut(s) | 100, 230, 242, 314, 345 |
| DpnII | GATC | 5 cut(s) | 98, 228, 240, 312, 343 |
| Eco147I | AGGCCT | 1 cut(s) | 137 |
| Eco24I | GRGCYC | 1 cut(s) | 175 |
| Eco31I | GGTCTC | 1 cut(s) | 227 |
| Eco47I | GGWCC | 1 cut(s) | 150 |
| Eco57I | CTGAAG | 1 cut(s) | 167 |
| Eco88I | CYCGRG | 1 cut(s) | 371 |
| EcoO109I | RGGNCCY | 2 cut(s) | 150, 171 |
| EcoRII | CCWGG | 1 cut(s) | 127 |
| EcoT38I | GRGCYC | 1 cut(s) | 175 |
| FaqI | GGGAC | 2 cut(s) | 128, 163 |
| FokI | GGATG | 1 cut(s) | 233 |
| FriOI | GRGCYC | 1 cut(s) | 175 |
| HaeIII | GGCC | 3 cut(s) | 137, 173, 215 |
| HapII | CCGG | 5 cut(s) | 79, 147, 285, 356, 385 |
| HinfI | GANTC | 1 cut(s) | 82 |
| HpaII | CCGG | 5 cut(s) | 79, 147, 285, 356, 385 |
| Hpy188I | TCNGA | 2 cut(s) | 259, 343 |
| Hpy188III | TCNNGA | 3 cut(s) | 79, 232, 269 |
| Hpy99I | CGWCG | 2 cut(s) | 113, 263 |
| HpyAV | CCTTC | 4 cut(s) | 50, 75, 82, 148 |
| HpyCH4III | ACNGT | 1 cut(s) | 263 |
| HpyCH4V | TGCA | 1 cut(s) | 246 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 212 |
| HpyF3I | CTNAG | 2 cut(s) | 7, 164 |
| Kpn2I | TCCGGA | 1 cut(s) | 78 |
| Kzo9I | GATC | 5 cut(s) | 98, 228, 240, 312, 343 |
| LmnI | GCTCC | 1 cut(s) | 149 |
| LweI | GCATC | 1 cut(s) | 255 |
| MalI | GATC | 5 cut(s) | 100, 230, 242, 314, 345 |
| MbiI | CCGCTC | 1 cut(s) | 370 |
| MboI | GATC | 5 cut(s) | 98, 228, 240, 312, 343 |
| MboII | GAAGA | 4 cut(s) | 50, 53, 60, 67 |
| MhlI | GDGCHC | 2 cut(s) | 175, 268 |
| MluCI | AATT | 2 cut(s) | 28, 397 |
| MlyI | GAGTC | 1 cut(s) | 76 |
| MmeI | TCCRAC | 2 cut(s) | 282, 321 |
| MnlI | CCTC | 5 cut(s) | 16, 101, 163, 205, 292 |
| MroI | TCCGGA | 1 cut(s) | 78 |
| MseI | TTAA | 1 cut(s) | 24 |
| MspI | CCGG | 5 cut(s) | 79, 147, 285, 356, 385 |
| MspR9I | CCNGG | 3 cut(s) | 129, 148, 356 |
| MvaI | CCWGG | 1 cut(s) | 129 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 212 |
| NciI | CCSGG | 2 cut(s) | 148, 356 |
| NdeII | GATC | 5 cut(s) | 98, 228, 240, 312, 343 |
| NlaIV | GGNNCC | 5 cut(s) | 145, 151, 172, 173, 280 |
| PaeR7I | CTCGAG | 1 cut(s) | 371 |
| PceI | AGGCCT | 1 cut(s) | 137 |
| PfoI | TCCNGGA | 1 cut(s) | 146 |
| PleI | GAGTC | 1 cut(s) | 76 |
| PpsI | GAGTC | 1 cut(s) | 76 |
| PpuMI | RGGWCCY | 1 cut(s) | 150 |
| Psp5II | RGGWCCY | 1 cut(s) | 150 |
| Psp6I | CCWGG | 1 cut(s) | 127 |
| PspGI | CCWGG | 1 cut(s) | 127 |
| PspN4I | GGNNCC | 5 cut(s) | 145, 151, 172, 173, 280 |
| PspOMI | GGGCCC | 1 cut(s) | 171 |
| PspPI | GGNCC | 4 cut(s) | 150, 171, 172, 214 |
| PspPPI | RGGWCCY | 1 cut(s) | 150 |
| PspXI | VCTCGAGB | 1 cut(s) | 371 |
| SaqAI | TTAA | 1 cut(s) | 24 |
| Sau3AI | GATC | 5 cut(s) | 98, 228, 240, 312, 343 |
| Sau96I | GGNCC | 4 cut(s) | 150, 171, 172, 214 |
| SchI | GAGTC | 1 cut(s) | 76 |
| ScrFI | CCNGG | 3 cut(s) | 129, 148, 356 |
| SduI | GDGCHC | 2 cut(s) | 175, 268 |
| SetI | ASST | 3 cut(s) | 155, 183, 239 |
| SfaNI | GCATC | 1 cut(s) | 255 |
| Sfr274I | CTCGAG | 1 cut(s) | 371 |
| SinI | GGWCC | 1 cut(s) | 150 |
| SlaI | CTCGAG | 1 cut(s) | 371 |
| SmlI | CTYRAG | 1 cut(s) | 371 |
| SmoI | CTYRAG | 1 cut(s) | 371 |
| Sse9I | AATT | 2 cut(s) | 28, 397 |
| SseBI | AGGCCT | 1 cut(s) | 137 |
| SsiI | CCGC | 1 cut(s) | 368 |
| StuI | AGGCCT | 1 cut(s) | 137 |
| StyD4I | CCNGG | 3 cut(s) | 127, 146, 354 |
| TaaI | ACNGT | 1 cut(s) | 263 |
| TaqI | TCGA | 3 cut(s) | 97, 231, 372 |
| TasI | AATT | 2 cut(s) | 28, 397 |
| Tru1I | TTAA | 1 cut(s) | 24 |
| Tru9I | TTAA | 1 cut(s) | 24 |
| TspDTI | ATGAA | 1 cut(s) | 367 |
| VpaK11BI | GGWCC | 1 cut(s) | 150 |
| XhoI | CTCGAG | 1 cut(s) | 371 |