Prupe.5G130300_v2.0.a1
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000212
Physical Location & Seq
Forward (+)
12591804 .. 12593842
2039 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G130300.1

Sequence Viewer

Length: 1428 bp
ATGGAAGAAATTATACCCTCATCTTCTCCACCCCAACTTTGTCAAGAAAACTCAGTCTCATTCCAACAACGTCTCCAGTTCATAGTTCAGAACAGGCCTGAATGGTGGGTGTATTCGATTTTCTGGCAAGCCTCCAAAGACAGCAATGACCAAGTTGCCTTGTCATGGGCTGGCGGCCATTGCAAAAGCCCTAGGGACTTGGCATCCAAAAGAAGCAACAAAATGGTCAATAATAAACATTTTGTTGAGAGGAAGAAGGTGATTAACAACAGAGAAGCTGAATCACTTTTCCATGAAGAAATGGACTTGGACATGAGGCTGGTTGATCATGTAGTTGGAGATGTTACTGATTCTGAGTGGTTTTACTTTTACAGCATTTCTTTAACCCAGTCATTTGTTGCAGGCCATGCGACAAATAATATTCTGGGCCGTTCGTTTTGCTCTGGTGGTTTTGTTTGGCTTGCAGGTGACCATGAGCTTCAGTTTTATGAGTGTGAGAGAGTGAAAAAGGCTAGAATGCATGGAATTCAATCTCTGGTTTGTATTGCAACTCCTTGTGGGGTTCTTGAGCTGGCTTCTCCGGATGTGATCAAAGAAGATTTGGGTCTTGTGCATCTTTCAAAATCATTATTTCTATCAGACAACAACAGGGTTTCAAAGCAGGACAGCCGTGACGTTAATGCACTTGTTCCTCCCTTGGAAAGTGGGATGTTTTCAGGAGGTCAAAAAGATTTGACCAAACAAGGTGACACAAAAGAAGCTGCACCTATCAATATAGGTGGGTCTTCATCAGACTCTGCCGACAATTTCACCTCTGATAATACAGAGAGTACCCGAATGAAAACGAGAGGAAGATCATCATCAAACCATGCACCACAATTATTAAACCATGTCGAGGCGGAGAGACAGAGGCGGGAGAAGCTTAACCATAGATTTTATGCCCTCCGCTCTGTCGTTCCGAATGTGTCGAAGATGGACAGATCTTCTTTGCTTGCTGATGCTGTGGCATACATCAATCAGCTCAAAGCAAAGACTGAAGAATTGGAGGACAAAATCCAATCACAGCCCCAAAATCCCAAAAGGGGAAATGTGAGCAATGCTGATCATCATCACTATAGCCAAAGCACCAGCCCCATAGTTGATTTTCATCATTCAAACAATAACAATACTAATAGAGCAGCTGCTGCTCTGGAAGTGGATGTGAAGATTTTAGGCTCAGAAGCCGTGATACGAGTTCAGTGTCCAGATCAAGAATACCCGTATGCTAAATTGATGAATGCACTCAAATCCCTTCGGCTACAAGTTTGTCATGCAAGCATTTCAAATGTGAAAGACTTGATGATTCAAAATGTTGTGGTAAGAGTGCCTTATGGGTTCATTAGTGATGAGGCCATGAGAATGGGTATTATAAAAAAATGGTACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

476

Amino Acids

53.52

Weight (kDa)

6.99

Isoelectric Point (pI)

50.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1409
AarI CACCTGC 1 cut(s) 455
Acc36I ACCTGC 1 cut(s) 455
AccBSI CCGCTC 1 cut(s) 948
AccIII TCCGGA 1 cut(s) 580
AciI CCGC 4 cut(s) 174, 899, 913, 946
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 1 cut(s) 525
AcuI CTGAAG 2 cut(s) 464, 1056
AfaI GTAC 2 cut(s) 832, 1421
AfiI CCNNNNNNNGG 3 cut(s) 165, 895, 1082
AgsI TTSAA 6 cut(s) 530, 621, 657, 1155, 1323, 1346
AluBI AGCT 7 cut(s) 278, 478, 571, 761, 922, 1021, 1181
AluI AGCT 7 cut(s) 278, 478, 571, 761, 922, 1021, 1181
Alw26I GTCTC 3 cut(s) 61, 77, 898
AlwNI CAGNNNCTG 2 cut(s) 797, 1184
Aor13HI TCCGGA 1 cut(s) 580
AoxI GGCC 5 cut(s) 95, 175, 403, 427, 1389
ApeKI GCWGC 4 cut(s) 761, 1178, 1181, 1184
ApoI RAATTY 1 cut(s) 525
AspA2I CCTAGG 1 cut(s) 191
AspS9I GGNCC 1 cut(s) 427
AsuHPI GGTGA 4 cut(s) 271, 479, 758, 802
AvrII CCTAGG 1 cut(s) 191
BarI GAAGNNNNNNTAC 3 cut(s) 29, 1212, 1244
BbsI GAAGAC 1 cut(s) 777
BbvI GCAGC 4 cut(s) 748, 1168, 1171, 1190
BccI CCATC 1 cut(s) 967
BceAI ACGGC 3 cut(s) 414, 654, 1208
BclI TGATCA 3 cut(s) 325, 588, 1102
BcoDI GTCTC 3 cut(s) 61, 77, 898
BfaI CTAG 2 cut(s) 192, 513
BfmI CTRYAG 1 cut(s) 1114
BfuAI ACCTGC 1 cut(s) 455
BglII AGATCT 1 cut(s) 980
BisI GCNGC 5 cut(s) 175, 762, 1179, 1182, 1185
BlnI CCTAGG 1 cut(s) 191
BlsI GCNGC 5 cut(s) 176, 763, 1180, 1183, 1186
BmgT120I GGNCC 1 cut(s) 427
BmrI ACTGGG 1 cut(s) 382
BmsI GCATC 3 cut(s) 212, 622, 988
BmuI ACTGGG 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 777
BpmI CTGGAG 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 587
BsaBI GATNNNNATC 3 cut(s) 859, 1107, 1146
BsaJI CCNNGG 2 cut(s) 191, 696
BsaWI WCCGGW 1 cut(s) 580
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
Bsc4I CCNNNNNNNGG 3 cut(s) 165, 895, 1082
Bse1I ACTGG 2 cut(s) 76, 388
Bse3DI GCAATG 3 cut(s) 151, 178, 1102
Bse8I GATNNNNATC 3 cut(s) 859, 1107, 1146
BseAI TCCGGA 1 cut(s) 580
BseDI CCNNGG 2 cut(s) 191, 696
BseGI GGATG 4 cut(s) 203, 589, 714, 1204
BseJI GATNNNNATC 3 cut(s) 859, 1107, 1146
BseLI CCNNNNNNNGG 3 cut(s) 165, 895, 1082
BseMI GCAATG 3 cut(s) 151, 178, 1102
BseMII CTCAG 3 cut(s) 66, 345, 1230
BseNI ACTGG 2 cut(s) 76, 388
BseXI GCAGC 4 cut(s) 748, 1168, 1171, 1190
BsgI GTGCAG 1 cut(s) 747
BshFI GGCC 5 cut(s) 97, 177, 405, 429, 1391
BsiSI CCGG 1 cut(s) 581
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 3 cut(s) 165, 895, 1082
BsmAI GTCTC 3 cut(s) 61, 77, 898
BsmBI CGTCTC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 209
BsmI GAATGC 2 cut(s) 522, 1282
BsnI GGCC 5 cut(s) 97, 177, 405, 429, 1391
Bsp13I TCCGGA 1 cut(s) 580
Bsp143I GATC 6 cut(s) 325, 588, 854, 980, 1102, 1246
BspACI CCGC 4 cut(s) 174, 899, 913, 946
BspANI GGCC 5 cut(s) 97, 177, 405, 429, 1391
BspCNI CTCAG 3 cut(s) 65, 346, 1229
BspEI TCCGGA 1 cut(s) 580
BspMI ACCTGC 1 cut(s) 455
BsrBI CCGCTC 1 cut(s) 948
BsrDI GCAATG 3 cut(s) 151, 178, 1102
BsrI ACTGG 2 cut(s) 76, 388
BssECI CCNNGG 2 cut(s) 191, 696
BssMI GATC 6 cut(s) 325, 588, 854, 980, 1102, 1246
BssT1I CCWWGG 2 cut(s) 191, 696
BstAPI GCANNNNNTGC 2 cut(s) 407, 1184
BstC8I GCNNGC 7 cut(s) 129, 172, 403, 462, 573, 993, 1315
BstDEI CTNAG 3 cut(s) 52, 354, 1216
BstEII GGTNACC 1 cut(s) 467
BstF5I GGATG 4 cut(s) 203, 589, 714, 1204
BstKTI GATC 6 cut(s) 328, 591, 857, 983, 1105, 1249
BstMAI GTCTC 3 cut(s) 61, 77, 898
BstMBI GATC 6 cut(s) 325, 588, 854, 980, 1102, 1246
BstMWI GCNNNNNNNGC 4 cut(s) 180, 407, 919, 1184
BstPI GGTNACC 1 cut(s) 467
BstSFI CTRYAG 1 cut(s) 1114
BstV1I GCAGC 4 cut(s) 748, 1168, 1171, 1190
BstV2I GAAGAC 1 cut(s) 777
BstX2I RGATCY 1 cut(s) 980
BstXI CCANNNNNNTGG 1 cut(s) 1399
BstYI RGATCY 1 cut(s) 980
BsuRI GGCC 5 cut(s) 97, 177, 405, 429, 1391
BtsCI GGATG 4 cut(s) 203, 589, 714, 1204
BtsIMutI CAGTG 1 cut(s) 1244
BveI ACCTGC 1 cut(s) 455
Cac8I GCNNGC 7 cut(s) 129, 172, 403, 462, 573, 993, 1315
CaiI CAGNNNCTG 2 cut(s) 797, 1184
Cfr13I GGNCC 1 cut(s) 427
Csp6I GTAC 2 cut(s) 831, 1420
CspCI CAANNNNNGTGG 2 cut(s) 760, 795
CviQI GTAC 2 cut(s) 831, 1420
DdeI CTNAG 3 cut(s) 52, 354, 1216
DpnI GATC 6 cut(s) 327, 590, 856, 982, 1104, 1248
DpnII GATC 6 cut(s) 325, 588, 854, 980, 1102, 1246
EaeI YGGCCR 1 cut(s) 175
EciI GGCGGA 1 cut(s) 914
Eco130I CCWWGG 2 cut(s) 191, 696
Eco147I AGGCCT 1 cut(s) 97
Eco57I CTGAAG 2 cut(s) 464, 1056
Eco91I GGTNACC 1 cut(s) 467
EcoO65I GGTNACC 1 cut(s) 467
EcoRI GAATTC 1 cut(s) 525
EcoT14I CCWWGG 2 cut(s) 191, 696
EcoT22I ATGCAT 1 cut(s) 522
ErhI CCWWGG 2 cut(s) 191, 696
Esp3I CGTCTC 1 cut(s) 77
FalI AAGNNNNNCTT 2 cut(s) 1351, 1383
FaqI GGGAC 1 cut(s) 209
FauI CCCGC 1 cut(s) 906
FbaI TGATCA 3 cut(s) 325, 588, 1102
Fnu4HI GCNGC 5 cut(s) 175, 762, 1179, 1182, 1185
FokI GGATG 4 cut(s) 190, 596, 721, 1211
Fsp4HI GCNGC 5 cut(s) 175, 762, 1179, 1182, 1185
FspBI CTAG 2 cut(s) 192, 513
GluI GCNGC 5 cut(s) 175, 762, 1179, 1182, 1185
GsuI CTGGAG 1 cut(s) 59
HaeIII GGCC 5 cut(s) 97, 177, 405, 429, 1391
HapII CCGG 1 cut(s) 581
HindIII AAGCTT 1 cut(s) 920
HinfI GANTC 4 cut(s) 281, 350, 794, 1342
HpaII CCGG 1 cut(s) 581
HphI GGTGA 4 cut(s) 271, 479, 758, 802
Hpy188I TCNGA 7 cut(s) 90, 355, 640, 793, 817, 960, 1219
Hpy188III TCNNGA 7 cut(s) 44, 566, 581, 717, 1190, 1244, 1250
HpyAV CCTTC 2 cut(s) 250, 1301
HpyCH4IV ACGT 2 cut(s) 70, 675
HpyF10VI GCNNNNNNNGC 4 cut(s) 180, 407, 919, 1184
HpyF3I CTNAG 3 cut(s) 52, 354, 1216
HpySE526I ACGT 2 cut(s) 70, 675
Kpn2I TCCGGA 1 cut(s) 580
Ksp22I TGATCA 3 cut(s) 325, 588, 1102
Kzo9I GATC 6 cut(s) 325, 588, 854, 980, 1102, 1246
Lsp1109I GCAGC 4 cut(s) 748, 1168, 1171, 1190
LweI GCATC 3 cut(s) 212, 622, 988
MaeI CTAG 2 cut(s) 192, 513
MaeII ACGT 2 cut(s) 70, 675
MaeIII GTNAC 4 cut(s) 343, 467, 671, 746
MalI GATC 6 cut(s) 327, 590, 856, 982, 1104, 1248
MbiI CCGCTC 1 cut(s) 948
MboI GATC 6 cut(s) 325, 588, 854, 980, 1102, 1246
MflI RGATCY 1 cut(s) 980
MluCI AATT 7 cut(s) 9, 525, 805, 878, 1040, 1268, 1423
MlyI GAGTC 1 cut(s) 788
MmeI TCCRAC 2 cut(s) 88, 316
Mph1103I ATGCAT 1 cut(s) 522
MroI TCCGGA 1 cut(s) 580
MseI TTAA 5 cut(s) 264, 383, 678, 884, 924
MslI CAYNNNNRTG 1 cut(s) 1397
MspA1I CMGCKG 1 cut(s) 1181
MspI CCGG 1 cut(s) 581
Mva1269I GAATGC 2 cut(s) 522, 1282
MwoI GCNNNNNNNGC 4 cut(s) 180, 407, 919, 1184
NdeII GATC 6 cut(s) 325, 588, 854, 980, 1102, 1246
NmuCI GTSAC 3 cut(s) 467, 671, 746
NsiI ATGCAT 1 cut(s) 522
PaqCI CACCTGC 1 cut(s) 455
PceI AGGCCT 1 cut(s) 97
PctI GAATGC 2 cut(s) 522, 1282
PfeI GAWTC 3 cut(s) 281, 350, 1342
PkrI GCNGC 5 cut(s) 176, 763, 1180, 1183, 1186
PleI GAGTC 1 cut(s) 788
PpsI GAGTC 1 cut(s) 788
PsiI TTATAA 1 cut(s) 1409
PspEI GGTNACC 1 cut(s) 467
PspPI GGNCC 1 cut(s) 427
PstNI CAGNNNCTG 2 cut(s) 797, 1184
PsuI RGATCY 1 cut(s) 980
PvuII CAGCTG 1 cut(s) 1181
RsaI GTAC 2 cut(s) 832, 1421
RsaNI GTAC 2 cut(s) 831, 1420
RseI CAYNNNNRTG 1 cut(s) 1397
SaqAI TTAA 5 cut(s) 264, 383, 678, 884, 924
SatI GCNGC 5 cut(s) 175, 762, 1179, 1182, 1185
Sau3AI GATC 6 cut(s) 325, 588, 854, 980, 1102, 1246
Sau96I GGNCC 1 cut(s) 427
SchI GAGTC 1 cut(s) 788
SfaNI GCATC 3 cut(s) 212, 622, 988
SfcI CTRYAG 1 cut(s) 1114
SmiMI CAYNNNNRTG 1 cut(s) 1397
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
Sse9I AATT 7 cut(s) 9, 525, 805, 878, 1040, 1268, 1423
SseBI AGGCCT 1 cut(s) 97
SsiI CCGC 4 cut(s) 174, 899, 913, 946
SspI AATATT 1 cut(s) 421
SspMI CTAG 2 cut(s) 192, 513
StuI AGGCCT 1 cut(s) 97
StyI CCWWGG 2 cut(s) 191, 696
TaiI ACGT 2 cut(s) 73, 678
TaqI TCGA 3 cut(s) 116, 894, 968
TasI AATT 7 cut(s) 9, 525, 805, 878, 1040, 1268, 1423
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 3 cut(s) 281, 350, 1342
Tru1I TTAA 5 cut(s) 264, 383, 678, 884, 924
Tru9I TTAA 5 cut(s) 264, 383, 678, 884, 924
TscAI CASTG 1 cut(s) 1244
TseFI GTSAC 3 cut(s) 467, 671, 746
TseI GCWGC 4 cut(s) 761, 1178, 1181, 1184
Tsp45I GTSAC 3 cut(s) 467, 671, 746
TspDTI ATGAA 7 cut(s) 70, 309, 777, 854, 1136, 1289, 1366
TspRI CASTG 1 cut(s) 1244
XapI RAATTY 1 cut(s) 525
XmaJI CCTAGG 1 cut(s) 191
XspI CTAG 2 cut(s) 192, 513
Zsp2I ATGCAT 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.