transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 119, 153, 328 |
| AcuI | CTGAAG | 1 cut(s) | 71 |
| AcyI | GRCGYC | 3 cut(s) | 11, 27, 249 |
| AfaI | GTAC | 1 cut(s) | 38 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 207, 258 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 10, 31 |
| AjnI | CCWGG | 1 cut(s) | 126 |
| AluBI | AGCT | 5 cut(s) | 70, 82, 345, 428, 461 |
| AluI | AGCT | 5 cut(s) | 70, 82, 345, 428, 461 |
| Alw21I | GWGCWC | 1 cut(s) | 143 |
| Alw26I | GTCTC | 1 cut(s) | 425 |
| Ama87I | CYCGRG | 1 cut(s) | 218 |
| AoxI | GGCC | 2 cut(s) | 54, 182 |
| ApeKI | GCWGC | 3 cut(s) | 16, 82, 428 |
| AsuHPI | GGTGA | 2 cut(s) | 241, 397 |
| AvaI | CYCGRG | 1 cut(s) | 218 |
| BaeGI | GKGCMC | 1 cut(s) | 245 |
| Bbv12I | GWGCWC | 1 cut(s) | 143 |
| BbvI | GCAGC | 3 cut(s) | 3, 69, 415 |
| BccI | CCATC | 1 cut(s) | 295 |
| BceAI | ACGGC | 2 cut(s) | 14, 321 |
| BciT130I | CCWGG | 1 cut(s) | 128 |
| BcoDI | GTCTC | 1 cut(s) | 425 |
| BfmI | CTRYAG | 1 cut(s) | 83 |
| BisI | GCNGC | 3 cut(s) | 17, 83, 429 |
| BlsI | GCNGC | 3 cut(s) | 18, 84, 430 |
| Bme1390I | CCNGG | 1 cut(s) | 128 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 10, 31 |
| BmeT110I | CYCGRG | 1 cut(s) | 218 |
| BmiI | GGNNCC | 1 cut(s) | 393 |
| BmrFI | CCNGG | 1 cut(s) | 128 |
| BmsI | GCATC | 3 cut(s) | 300, 339, 363 |
| BpmI | CTGGAG | 1 cut(s) | 92 |
| BsaHI | GRCGYC | 3 cut(s) | 11, 27, 249 |
| BsaI | GGTCTC | 1 cut(s) | 425 |
| BsaJI | CCNNGG | 2 cut(s) | 57, 159 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 207, 258 |
| BseBI | CCWGG | 1 cut(s) | 128 |
| BseDI | CCNNGG | 2 cut(s) | 57, 159 |
| BseGI | GGATG | 1 cut(s) | 330 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 207, 258 |
| BseSI | GKGCMC | 1 cut(s) | 245 |
| BseXI | GCAGC | 3 cut(s) | 3, 69, 415 |
| BsgI | GTGCAG | 1 cut(s) | 284 |
| BshFI | GGCC | 2 cut(s) | 56, 184 |
| BsiHKAI | GWGCWC | 1 cut(s) | 143 |
| BsiHKCI | CYCGRG | 1 cut(s) | 218 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 207, 258 |
| BsmAI | GTCTC | 1 cut(s) | 425 |
| BsnI | GGCC | 2 cut(s) | 56, 184 |
| Bso31I | GGTCTC | 1 cut(s) | 425 |
| BsoBI | CYCGRG | 1 cut(s) | 218 |
| Bsp1286I | GDGCHC | 2 cut(s) | 143, 245 |
| Bsp143I | GATC | 2 cut(s) | 361, 448 |
| BspACI | CCGC | 3 cut(s) | 119, 153, 328 |
| BspANI | GGCC | 2 cut(s) | 56, 184 |
| BspLI | GGNNCC | 1 cut(s) | 393 |
| BspMAI | CTGCAG | 1 cut(s) | 87 |
| BspTNI | GGTCTC | 1 cut(s) | 425 |
| BssECI | CCNNGG | 2 cut(s) | 57, 159 |
| BssMI | GATC | 2 cut(s) | 361, 448 |
| BssNI | GRCGYC | 3 cut(s) | 11, 27, 249 |
| BssT1I | CCWWGG | 1 cut(s) | 57 |
| Bst2UI | CCWGG | 1 cut(s) | 128 |
| Bst4CI | ACNGT | 1 cut(s) | 178 |
| BstACI | GRCGYC | 3 cut(s) | 11, 27, 249 |
| BstC8I | GCNNGC | 1 cut(s) | 343 |
| BstDEI | CTNAG | 1 cut(s) | 319 |
| BstDSI | CCRYGG | 1 cut(s) | 159 |
| BstF5I | GGATG | 1 cut(s) | 330 |
| BstKTI | GATC | 2 cut(s) | 364, 451 |
| BstMAI | GTCTC | 1 cut(s) | 425 |
| BstMBI | GATC | 2 cut(s) | 361, 448 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 351 |
| BstNI | CCWGG | 1 cut(s) | 128 |
| BstSCI | CCNGG | 1 cut(s) | 126 |
| BstSFI | CTRYAG | 1 cut(s) | 83 |
| BstSLI | GKGCMC | 1 cut(s) | 245 |
| BstV1I | GCAGC | 3 cut(s) | 3, 69, 415 |
| BsuRI | GGCC | 2 cut(s) | 56, 184 |
| BtgI | CCRYGG | 1 cut(s) | 159 |
| BtgZI | GCGATG | 1 cut(s) | 323 |
| BtsCI | GGATG | 1 cut(s) | 330 |
| BtsIMutI | CAGTG | 1 cut(s) | 183 |
| Cac8I | GCNNGC | 1 cut(s) | 343 |
| CseI | GACGC | 2 cut(s) | 35, 257 |
| Csp6I | GTAC | 1 cut(s) | 37 |
| CviAII | CATG | 2 cut(s) | 253, 338 |
| CviJI | RGCY | 8 cut(s) | 56, 70, 82, 184, 215, 345, 428, 461 |
| CviKI_1 | RGCY | 8 cut(s) | 56, 70, 82, 184, 215, 345, 428, 461 |
| CviQI | GTAC | 1 cut(s) | 37 |
| DdeI | CTNAG | 1 cut(s) | 319 |
| DpnI | GATC | 2 cut(s) | 363, 450 |
| DpnII | GATC | 2 cut(s) | 361, 448 |
| DriI | GACNNNNNGTC | 2 cut(s) | 10, 31 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 10, 31 |
| EciI | GGCGGA | 1 cut(s) | 134 |
| Eco130I | CCWWGG | 1 cut(s) | 57 |
| Eco147I | AGGCCT | 1 cut(s) | 184 |
| Eco31I | GGTCTC | 1 cut(s) | 425 |
| Eco32I | GATATC | 1 cut(s) | 190 |
| Eco57I | CTGAAG | 1 cut(s) | 71 |
| Eco88I | CYCGRG | 1 cut(s) | 218 |
| EcoRII | CCWGG | 1 cut(s) | 126 |
| EcoRV | GATATC | 1 cut(s) | 190 |
| EcoT14I | CCWWGG | 1 cut(s) | 57 |
| ErhI | CCWWGG | 1 cut(s) | 57 |
| FaeI | CATG | 2 cut(s) | 256, 341 |
| FaiI | YATR | 4 cut(s) | 254, 339, 368, 404 |
| FatI | CATG | 2 cut(s) | 252, 337 |
| Fnu4HI | GCNGC | 3 cut(s) | 17, 83, 429 |
| FokI | GGATG | 1 cut(s) | 317 |
| Fsp4HI | GCNGC | 3 cut(s) | 17, 83, 429 |
| GluI | GCNGC | 3 cut(s) | 17, 83, 429 |
| GsuI | CTGGAG | 1 cut(s) | 92 |
| HaeIII | GGCC | 2 cut(s) | 56, 184 |
| HgaI | GACGC | 2 cut(s) | 35, 257 |
| Hin1I | GRCGYC | 3 cut(s) | 11, 27, 249 |
| Hin1II | CATG | 2 cut(s) | 256, 341 |
| HindIII | AAGCTT | 1 cut(s) | 459 |
| HinfI | GANTC | 2 cut(s) | 74, 92 |
| HphI | GGTGA | 2 cut(s) | 241, 397 |
| Hpy166II | GTNNAC | 2 cut(s) | 64, 280 |
| Hpy188I | TCNGA | 4 cut(s) | 25, 271, 440, 453 |
| Hpy188III | TCNNGA | 3 cut(s) | 218, 220, 395 |
| Hpy8I | GTNNAC | 2 cut(s) | 64, 280 |
| Hpy99I | CGWCG | 2 cut(s) | 16, 29 |
| HpyAV | CCTTC | 3 cut(s) | 46, 382, 410 |
| HpyCH4III | ACNGT | 1 cut(s) | 178 |
| HpyCH4V | TGCA | 2 cut(s) | 85, 265 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 351 |
| HpyF3I | CTNAG | 1 cut(s) | 319 |
| Hsp92I | GRCGYC | 3 cut(s) | 11, 27, 249 |
| Hsp92II | CATG | 2 cut(s) | 256, 341 |
| Kzo9I | GATC | 2 cut(s) | 361, 448 |
| LmnI | GCTCC | 2 cut(s) | 163, 375 |
| LpnPI | CCDG | 7 cut(s) | 56, 62, 113, 140, 149, 198, 408 |
| Lsp1109I | GCAGC | 3 cut(s) | 3, 69, 415 |
| LweI | GCATC | 3 cut(s) | 300, 339, 363 |
| MaeIII | GTNAC | 1 cut(s) | 314 |
| MalI | GATC | 2 cut(s) | 363, 450 |
| MboI | GATC | 2 cut(s) | 361, 448 |
| MboII | GAAGA | 2 cut(s) | 244, 425 |
| MhlI | GDGCHC | 2 cut(s) | 143, 245 |
| MlyI | GAGTC | 2 cut(s) | 83, 101 |
| MmeI | TCCRAC | 2 cut(s) | 48, 249 |
| MnlI | CCTC | 5 cut(s) | 81, 166, 174, 220, 288 |
| MseI | TTAA | 2 cut(s) | 299, 463 |
| MspR9I | CCNGG | 1 cut(s) | 128 |
| MvaI | CCWGG | 1 cut(s) | 128 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 351 |
| NdeII | GATC | 2 cut(s) | 361, 448 |
| NlaIII | CATG | 2 cut(s) | 256, 341 |
| NlaIV | GGNNCC | 1 cut(s) | 393 |
| NmuCI | GTSAC | 1 cut(s) | 314 |
| PaeR7I | CTCGAG | 1 cut(s) | 218 |
| PceI | AGGCCT | 1 cut(s) | 184 |
| PkrI | GCNGC | 3 cut(s) | 18, 84, 430 |
| PleI | GAGTC | 2 cut(s) | 82, 100 |
| PpsI | GAGTC | 2 cut(s) | 82, 100 |
| Psp6I | CCWGG | 1 cut(s) | 126 |
| PspGI | CCWGG | 1 cut(s) | 126 |
| PspN4I | GGNNCC | 1 cut(s) | 393 |
| PstI | CTGCAG | 1 cut(s) | 87 |
| RsaI | GTAC | 1 cut(s) | 38 |
| RsaNI | GTAC | 1 cut(s) | 37 |
| SaqAI | TTAA | 2 cut(s) | 299, 463 |
| SatI | GCNGC | 3 cut(s) | 17, 83, 429 |
| Sau3AI | GATC | 2 cut(s) | 361, 448 |
| SchI | GAGTC | 2 cut(s) | 83, 101 |
| ScrFI | CCNGG | 1 cut(s) | 128 |
| SduI | GDGCHC | 2 cut(s) | 143, 245 |
| SfaNI | GCATC | 3 cut(s) | 300, 339, 363 |
| SfcI | CTRYAG | 1 cut(s) | 83 |
| Sfr274I | CTCGAG | 1 cut(s) | 218 |
| SlaI | CTCGAG | 1 cut(s) | 218 |
| SmlI | CTYRAG | 1 cut(s) | 218 |
| SmoI | CTYRAG | 1 cut(s) | 218 |
| SseBI | AGGCCT | 1 cut(s) | 184 |
| SsiI | CCGC | 3 cut(s) | 119, 153, 328 |
| SspI | AATATT | 1 cut(s) | 444 |
| StuI | AGGCCT | 1 cut(s) | 184 |
| StyD4I | CCNGG | 1 cut(s) | 126 |
| StyI | CCWWGG | 1 cut(s) | 57 |
| TaaI | ACNGT | 1 cut(s) | 178 |
| TaqI | TCGA | 2 cut(s) | 77, 219 |
| Tru1I | TTAA | 2 cut(s) | 299, 463 |
| Tru9I | TTAA | 2 cut(s) | 299, 463 |
| TscAI | CASTG | 1 cut(s) | 183 |
| TseFI | GTSAC | 1 cut(s) | 314 |
| TseI | GCWGC | 3 cut(s) | 16, 82, 428 |
| Tsp45I | GTSAC | 1 cut(s) | 314 |
| TspGWI | ACGGA | 2 cut(s) | 148, 260 |
| TspRI | CASTG | 1 cut(s) | 183 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 157 |
| XhoI | CTCGAG | 1 cut(s) | 218 |