Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Reverse (-)

52075869 .. 52076219

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20487

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCCCTCAGTTCTTTTTTTTTTTTTAATAATTTTTTTTCTGTTATTTTTTTTTCCTTCGTTTTTATCTCTTTCTTCTTCCTTCTTCCGGGCTCACTCCCTCACTCGATCTTTCGCCGTCGGGGACGGCTCTGTTCCCGGCAAGGCCTTCGGCTCCGGAACCTCAATCTGGCTGAGCGGGGCCCACGAACTTCAGTTCAACAACTGCGAGAGAGCCAAAGAGGCTCAAATCCACGGGATCGAGACCTTGATCTGCATCCCAACTTCCGACGGTGTTCTTGAAATGGGTTCCTCCGGTTTGATCAGAGAGAACTGGGGGTTGATCCAGCAAGCCCAGTCGTTGTTCGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

116

Amino Acids

12.71

Weight (kDa)

5.82

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	27 - 115	1.1e-25	bHLH-MYC and R2R3-MYB transcription factors N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	177
AccIII	TCCGGA	1 cut(s)	155
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	2 cut(s)	245, 316
AcuI	CTGAAG	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	87, 168
AgsI	TTSAA	2 cut(s)	199, 281
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	2 cut(s)	245, 316
Aor13HI	TCCGGA	1 cut(s)	155
AoxI	GGCC	2 cut(s)	144, 180
ApaI	GGGCCC	1 cut(s)	184
AspS9I	GGNCC	2 cut(s)	180, 181
AsuC2I	CCSGG	2 cut(s)	89, 138
BaeGI	GKGCMC	1 cut(s)	184
BanII	GRGCYC	2 cut(s)	94, 184
BceAI	ACGGC	2 cut(s)	101, 142
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BclI	TGATCA	1 cut(s)	300
BcnI	CCSGG	2 cut(s)	89, 138
BcoDI	GTCTC	1 cut(s)	236
BglI	GCCNNNNNGGC	1 cut(s)	221
BlpI	GCTNAGC	1 cut(s)	173
Bme1390I	CCNGG	2 cut(s)	89, 138
BmgT120I	GGNCC	2 cut(s)	180, 181
BmiI	GGNNCC	5 cut(s)	154, 160, 181, 182, 289
BmrFI	CCNGG	2 cut(s)	89, 138
BmrI	ACTGGG	2 cut(s)	322, 328
BmsI	GCATC	1 cut(s)	264
BmuI	ACTGGG	2 cut(s)	322, 328
Bpu1102I	GCTNAGC	1 cut(s)	173
BpuMI	CCSGG	2 cut(s)	89, 138
BsaBI	GATNNNNATC	1 cut(s)	254
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	232
BsaWI	WCCGGW	2 cut(s)	155, 293
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 168
Bse1I	ACTGG	2 cut(s)	317, 334
Bse8I	GATNNNNATC	1 cut(s)	254
BseAI	TCCGGA	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	1 cut(s)	255
BseJI	GATNNNNATC	1 cut(s)	254
BseLI	CCNNNNNNNGG	2 cut(s)	87, 168
BseMII	CTCAG	2 cut(s)	21, 164
BseNI	ACTGG	2 cut(s)	317, 334
BseSI	GKGCMC	1 cut(s)	184
BshFI	GGCC	2 cut(s)	146, 182
BsiSI	CCGG	4 cut(s)	88, 138, 156, 294
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	2 cut(s)	87, 168
BsmAI	GTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	146, 182
Bso31I	GGTCTC	1 cut(s)	236
Bsp120I	GGGCCC	1 cut(s)	180
Bsp1286I	GDGCHC	2 cut(s)	94, 184
Bsp13I	TCCGGA	1 cut(s)	155
Bsp143I	GATC	5 cut(s)	107, 237, 249, 300, 321
Bsp1720I	GCTNAGC	1 cut(s)	173
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	2 cut(s)	146, 182
BspCNI	CTCAG	2 cut(s)	20, 165
BspEI	TCCGGA	1 cut(s)	155
BspLI	GGNNCC	5 cut(s)	154, 160, 181, 182, 289
BspPI	GGATC	2 cut(s)	245, 316
BspTNI	GGTCTC	1 cut(s)	236
BsrBI	CCGCTC	1 cut(s)	177
BsrI	ACTGG	2 cut(s)	317, 334
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	5 cut(s)	107, 237, 249, 300, 321
Bst4CI	ACNGT	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	2 cut(s)	7, 173
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	1 cut(s)	255
BstKTI	GATC	5 cut(s)	110, 240, 252, 303, 324
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	5 cut(s)	107, 237, 249, 300, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	87, 136
BstSLI	GKGCMC	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	146, 182
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	330
Cfr13I	GGNCC	2 cut(s)	180, 181
CviJI	RGCY	9 cut(s)	92, 129, 146, 153, 172, 182, 215, 224, 332
CviKI_1	RGCY	9 cut(s)	92, 129, 146, 153, 172, 182, 215, 224, 332
DdeI	CTNAG	2 cut(s)	7, 173
DpnI	GATC	5 cut(s)	109, 239, 251, 302, 323
DpnII	GATC	5 cut(s)	107, 237, 249, 300, 321
Eco147I	AGGCCT	1 cut(s)	146
Eco24I	GRGCYC	2 cut(s)	94, 184
Eco31I	GGTCTC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	180
EcoT38I	GRGCYC	2 cut(s)	94, 184
FaqI	GGGAC	1 cut(s)	137
FauI	CCCGC	1 cut(s)	170
FbaI	TGATCA	1 cut(s)	300
FokI	GGATG	1 cut(s)	242
FriOI	GRGCYC	2 cut(s)	94, 184
HaeIII	GGCC	2 cut(s)	146, 182
HapII	CCGG	4 cut(s)	88, 138, 156, 294
HpaII	CCGG	4 cut(s)	88, 138, 156, 294
Hpy188I	TCNGA	2 cut(s)	268, 305
Hpy188III	TCNNGA	3 cut(s)	156, 241, 278
Hpy99I	CGWCG	2 cut(s)	122, 272
HpyAV	CCTTC	3 cut(s)	66, 91, 157
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4V	TGCA	1 cut(s)	255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	2 cut(s)	7, 173
Kpn2I	TCCGGA	1 cut(s)	155
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	5 cut(s)	107, 237, 249, 300, 321
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	8 cut(s)	101, 151, 154, 169, 298, 307, 338, 347
LweI	GCATC	1 cut(s)	264
MalI	GATC	5 cut(s)	109, 239, 251, 302, 323
MbiI	CCGCTC	1 cut(s)	177
MboI	GATC	5 cut(s)	107, 237, 249, 300, 321
MboII	GAAGA	3 cut(s)	66, 69, 76
MhlI	GDGCHC	2 cut(s)	94, 184
MluCI	AATT	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	5 cut(s)	16, 110, 172, 214, 301
MroI	TCCGGA	1 cut(s)	155
MseI	TTAA	1 cut(s)	26
MspI	CCGG	4 cut(s)	88, 138, 156, 294
MspR9I	CCNGG	2 cut(s)	89, 138
MwoI	GCNNNNNNNGC	1 cut(s)	221
NciI	CCSGG	2 cut(s)	89, 138
NdeII	GATC	5 cut(s)	107, 237, 249, 300, 321
NlaIV	GGNNCC	5 cut(s)	154, 160, 181, 182, 289
PceI	AGGCCT	1 cut(s)	146
PspN4I	GGNNCC	5 cut(s)	154, 160, 181, 182, 289
PspOMI	GGGCCC	1 cut(s)	180
PspPI	GGNCC	2 cut(s)	180, 181
SaqAI	TTAA	1 cut(s)	26
Sau3AI	GATC	5 cut(s)	107, 237, 249, 300, 321
Sau96I	GGNCC	2 cut(s)	180, 181
ScrFI	CCNGG	2 cut(s)	89, 138
SduI	GDGCHC	2 cut(s)	94, 184
SetI	ASST	2 cut(s)	164, 248
SfaNI	GCATC	1 cut(s)	264
Sse9I	AATT	1 cut(s)	30
SseBI	AGGCCT	1 cut(s)	146
SsiI	CCGC	1 cut(s)	177
StuI	AGGCCT	1 cut(s)	146
StyD4I	CCNGG	2 cut(s)	87, 136
TaaI	ACNGT	1 cut(s)	272
TaqI	TCGA	2 cut(s)	106, 240
TasI	AATT	1 cut(s)	30
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.