Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001136.1

Orthogroup ID

OG0000212

Physical Location & Seq

Genomic Coordinates Reverse (-)

366869 .. 373119

Gene Structure 6251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001136.1_g000078.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgttcttcatgaaagttgtagaggacgttaaaccgagtgcgtgcatatgtggcaaggccttcagctccaggacctcaatctggcttagcggggcccacgagcttcagttcaacaactgcgagagagccaaagaggcccaaatctacgggatcgagaccttgatctgcatcccaacttccgacggtgttcttgaaatgggttcctccggtttgatcagagagaactgggggttgatccagcaagccaagccatttttcgggtcggatcagctcaacccggaaacaagaccgctcgagttcatcaaccggaacttctccatttttgacatcggcgtcattgccggttttcgcatcttgcaagttcttgccgtgccatcctccattcttgccgtgatcttcaccttgtgccaccaccttggagctgctttggaaccttgggacgtgtctaagggttgttcttaccatcttcaccatgctttccttacgcaagaagaagaacgaagctccgaacccaaacctagacttcgcagattccgactgccagatgaaaagagcgccgaagaaacggggccggaaacccaggcttggcagagacaagccactcaaccacttggaagcggagcggcaacgtcgggagaagctcacctcgcaagggcggcgttggaagcgagggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

225

Amino Acids

24.96

Weight (kDa)

5.84

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00870
fragaria_vesca	FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica	MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica	Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis	pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis	RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata	RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora	Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii	Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa	Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha	Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana	Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	332
AccBSI	CCGCTC	2 cut(s)	292, 623
AciI	CCGC	5 cut(s)	90, 290, 618, 623, 656
AclWI	GGATC	3 cut(s)	158, 229, 273
AcuI	CTGAAG	2 cut(s)	46, 89
AcyI	GRCGYC	1 cut(s)	333
AdeI	CACNNNGTG	1 cut(s)	405
AfiI	CCNNNNNNNGG	4 cut(s)	81, 257, 585, 652
AflIII	ACRYGT	1 cut(s)	441
AgsI	TTSAA	2 cut(s)	112, 194
AjiI	CACGTC	1 cut(s)	442
AjnI	CCWGG	2 cut(s)	68, 579
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	6 cut(s)	66, 103, 271, 422, 504, 641
AluI	AGCT	6 cut(s)	66, 103, 271, 422, 504, 641
Alw26I	GTCTC	2 cut(s)	149, 586
AlwI	GGATC	3 cut(s)	158, 229, 273
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	4 cut(s)	57, 93, 135, 569
ApaI	GGGCCC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	422
AspLEI	GCGC	1 cut(s)	557
AspS9I	GGNCC	5 cut(s)	72, 93, 94, 136, 569
AsuC2I	CCSGG	1 cut(s)	278
AsuHPI	GGTGA	3 cut(s)	391, 461, 635
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	72
BaeGI	GKGCMC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	97
BauI	CACGAG	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	2 cut(s)	382, 471
BceAI	ACGGC	2 cut(s)	353, 374
BciT130I	CCWGG	2 cut(s)	70, 581
BclI	TGATCA	1 cut(s)	213
BcnI	CCSGG	1 cut(s)	278
BcoDI	GTCTC	2 cut(s)	149, 586
BfaI	CTAG	1 cut(s)	519
BfoI	RGCGCY	1 cut(s)	558
BglI	GCCNNNNNGGC	1 cut(s)	134
BisI	GCNGC	3 cut(s)	423, 624, 657
BlpI	GCTNAGC	1 cut(s)	86
BlsI	GCNGC	3 cut(s)	424, 625, 658
Bme1390I	CCNGG	3 cut(s)	70, 278, 581
Bme18I	GGWCC	1 cut(s)	72
BmeT110I	CYCGRG	1 cut(s)	293
BmgBI	CACGTC	1 cut(s)	442
BmgT120I	GGNCC	5 cut(s)	72, 93, 94, 136, 569
BmiI	GGNNCC	5 cut(s)	94, 95, 202, 432, 570
BmrFI	CCNGG	3 cut(s)	70, 278, 581
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	2 cut(s)	177, 360
BmuI	ACTGGG	1 cut(s)	235
BpmI	CTGGAG	1 cut(s)	52
Bpu1102I	GCTNAGC	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	278
BsaBI	GATNNNNATC	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	3 cut(s)	415, 434, 579
BsaWI	WCCGGW	2 cut(s)	206, 306
Bsc4I	CCNNNNNNNGG	4 cut(s)	81, 257, 585, 652
Bse118I	RCCGGY	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	336
Bse8I	GATNNNNATC	1 cut(s)	167
BseBI	CCWGG	2 cut(s)	70, 581
BseDI	CCNNGG	3 cut(s)	415, 434, 579
BseGI	GGATG	2 cut(s)	168, 374
BseJI	GATNNNNATC	1 cut(s)	167
BseLI	CCNNNNNNNGG	4 cut(s)	81, 257, 585, 652
BseMI	GCAATG	1 cut(s)	336
BseNI	ACTGG	1 cut(s)	230
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	409
BshFI	GGCC	4 cut(s)	59, 95, 137, 571
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	5 cut(s)	207, 278, 307, 342, 572
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	4 cut(s)	81, 257, 585, 652
BsmAI	GTCTC	2 cut(s)	149, 586
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	4 cut(s)	59, 95, 137, 571
Bso31I	GGTCTC	1 cut(s)	149
BsoBI	CYCGRG	1 cut(s)	293
Bsp120I	GGGCCC	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	6 cut(s)	150, 162, 213, 234, 265, 393
Bsp1720I	GCTNAGC	1 cut(s)	86
BspACI	CCGC	5 cut(s)	90, 290, 618, 623, 656
BspANI	GGCC	4 cut(s)	59, 95, 137, 571
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	5 cut(s)	94, 95, 202, 432, 570
BspPI	GGATC	3 cut(s)	158, 229, 273
BspTNI	GGTCTC	1 cut(s)	149
BsrBI	CCGCTC	2 cut(s)	292, 623
BsrDI	GCAATG	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	230
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	3 cut(s)	415, 434, 579
BssMI	GATC	6 cut(s)	150, 162, 213, 234, 265, 393
BssNI	GRCGYC	1 cut(s)	333
BssSI	CACGAG	1 cut(s)	98
BssT1I	CCWWGG	2 cut(s)	415, 434
Bst2BI	CACGAG	1 cut(s)	98
Bst2UI	CCWGG	2 cut(s)	70, 581
Bst4CI	ACNGT	1 cut(s)	185
BstACI	GRCGYC	1 cut(s)	333
BstC8I	GCNNGC	2 cut(s)	43, 243
BstDEI	CTNAG	2 cut(s)	86, 447
BstF5I	GGATG	2 cut(s)	168, 374
BstH2I	RGCGCY	1 cut(s)	558
BstHHI	GCGC	1 cut(s)	557
BstKTI	GATC	6 cut(s)	153, 165, 216, 237, 268, 396
BstMAI	GTCTC	2 cut(s)	149, 586
BstMBI	GATC	6 cut(s)	150, 162, 213, 234, 265, 393
BstMWI	GCNNNNNNNGC	6 cut(s)	51, 134, 247, 647, 656, 665
BstNI	CCWGG	2 cut(s)	70, 581
BstSCI	CCNGG	3 cut(s)	68, 276, 579
BstSLI	GKGCMC	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	409
BstXI	CCANNNNNNTGG	1 cut(s)	416
BsuRI	GGCC	4 cut(s)	59, 95, 137, 571
BtrI	CACGTC	1 cut(s)	442
BtsCI	GGATG	2 cut(s)	168, 374
Cac8I	GCNNGC	2 cut(s)	43, 243
CciI	TCATGA	1 cut(s)	9
CfoI	GCGC	1 cut(s)	557
Cfr10I	RCCGGY	1 cut(s)	341
Cfr13I	GGNCC	5 cut(s)	72, 93, 94, 136, 569
CseI	GACGC	1 cut(s)	322
CviAII	CATG	2 cut(s)	10, 473
DdeI	CTNAG	2 cut(s)	86, 447
DpnI	GATC	6 cut(s)	152, 164, 215, 236, 267, 395
DpnII	GATC	6 cut(s)	150, 162, 213, 234, 265, 393
DraIII	CACNNNGTG	1 cut(s)	405
DrdI	GACNNNNNNGTC	1 cut(s)	332
DseDI	GACNNNNNNGTC	1 cut(s)	332
Eco130I	CCWWGG	2 cut(s)	415, 434
Eco147I	AGGCCT	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	97
Eco31I	GGTCTC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	72
Eco57I	CTGAAG	2 cut(s)	46, 89
Eco88I	CYCGRG	1 cut(s)	293
EcoO109I	RGGNCCY	2 cut(s)	72, 93
EcoRII	CCWGG	2 cut(s)	68, 579
EcoT14I	CCWWGG	2 cut(s)	415, 434
EcoT38I	GRGCYC	1 cut(s)	97
ErhI	CCWWGG	2 cut(s)	415, 434
FaeI	CATG	2 cut(s)	13, 476
FaiI	YATR	4 cut(s)	11, 47, 49, 474
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	2 cut(s)	9, 472
FauI	CCCGC	1 cut(s)	83
FauNDI	CATATG	1 cut(s)	47
FbaI	TGATCA	1 cut(s)	213
Fnu4HI	GCNGC	3 cut(s)	423, 624, 657
FokI	GGATG	2 cut(s)	155, 361
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	3 cut(s)	423, 624, 657
FspBI	CTAG	1 cut(s)	519
GlaI	GCGC	1 cut(s)	556
GluI	GCNGC	3 cut(s)	423, 624, 657
GsuI	CTGGAG	1 cut(s)	52
HaeII	RGCGCY	1 cut(s)	558
HaeIII	GGCC	4 cut(s)	59, 95, 137, 571
HapII	CCGG	5 cut(s)	207, 278, 307, 342, 572
HgaI	GACGC	1 cut(s)	322
HhaI	GCGC	1 cut(s)	557
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	2 cut(s)	13, 476
Hin6I	GCGC	1 cut(s)	555
HinP1I	GCGC	1 cut(s)	555
HinfI	GANTC	1 cut(s)	531
HpaII	CCGG	5 cut(s)	207, 278, 307, 342, 572
HphI	GGTGA	3 cut(s)	391, 461, 635
Hpy188I	TCNGA	5 cut(s)	181, 218, 265, 508, 536
Hpy188III	TCNNGA	4 cut(s)	10, 154, 191, 633
Hpy99I	CGWCG	2 cut(s)	185, 634
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	3 cut(s)	27, 441, 629
HpyCH4V	TGCA	3 cut(s)	45, 168, 358
HpyF10VI	GCNNNNNNNGC	6 cut(s)	51, 134, 247, 647, 656, 665
HpyF3I	CTNAG	2 cut(s)	86, 447
HpySE526I	ACGT	3 cut(s)	27, 441, 629
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	2 cut(s)	13, 476
HspAI	GCGC	1 cut(s)	555
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	6 cut(s)	150, 162, 213, 234, 265, 393
LmnI	GCTCC	4 cut(s)	71, 419, 509, 620
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	2 cut(s)	177, 360
MaeI	CTAG	1 cut(s)	519
MaeII	ACGT	3 cut(s)	27, 441, 629
MalI	GATC	6 cut(s)	152, 164, 215, 236, 267, 395
MbiI	CCGCTC	2 cut(s)	292, 623
MboI	GATC	6 cut(s)	150, 162, 213, 234, 265, 393
MboII	GAAGA	5 cut(s)	388, 458, 503, 506, 572
MhlI	GDGCHC	1 cut(s)	97
MmeI	TCCRAC	4 cut(s)	204, 243, 559, 642
MnlI	CCTC	7 cut(s)	16, 85, 127, 214, 388, 656, 663
MseI	TTAA	1 cut(s)	30
MspI	CCGG	5 cut(s)	207, 278, 307, 342, 572
MspR9I	CCNGG	3 cut(s)	70, 278, 581
MvaI	CCWGG	2 cut(s)	70, 581
MwoI	GCNNNNNNNGC	6 cut(s)	51, 134, 247, 647, 656, 665
NciI	CCSGG	1 cut(s)	278
NdeI	CATATG	1 cut(s)	47
NdeII	GATC	6 cut(s)	150, 162, 213, 234, 265, 393
NlaIII	CATG	2 cut(s)	13, 476
NlaIV	GGNNCC	5 cut(s)	94, 95, 202, 432, 570
PaeR7I	CTCGAG	1 cut(s)	293
PagI	TCATGA	1 cut(s)	9
PceI	AGGCCT	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	532
PfeI	GAWTC	1 cut(s)	531
PfoI	TCCNGGA	1 cut(s)	68
PkrI	GCNGC	3 cut(s)	424, 625, 658
PpuMI	RGGWCCY	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	72
Psp6I	CCWGG	2 cut(s)	68, 579
PspGI	CCWGG	2 cut(s)	68, 579
PspN4I	GGNNCC	5 cut(s)	94, 95, 202, 432, 570
PspOMI	GGGCCC	1 cut(s)	93
PspPI	GGNCC	5 cut(s)	72, 93, 94, 136, 569
PspPPI	RGGWCCY	1 cut(s)	72
PspXI	VCTCGAGB	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	3 cut(s)	423, 624, 657
Sau3AI	GATC	6 cut(s)	150, 162, 213, 234, 265, 393
Sau96I	GGNCC	5 cut(s)	72, 93, 94, 136, 569
ScrFI	CCNGG	3 cut(s)	70, 278, 581
SduI	GDGCHC	1 cut(s)	97
SfaNI	GCATC	2 cut(s)	177, 360
Sfr274I	CTCGAG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	72
SlaI	CTCGAG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	5 cut(s)	90, 290, 618, 623, 656
SspMI	CTAG	1 cut(s)	519
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	3 cut(s)	68, 276, 579
StyI	CCWWGG	2 cut(s)	415, 434
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	3 cut(s)	30, 444, 632
TaqI	TCGA	2 cut(s)	153, 294
TauI	GCSGC	2 cut(s)	626, 659
TfiI	GAWTC	1 cut(s)	531
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseI	GCWGC	1 cut(s)	422
TspDTI	ATGAA	3 cut(s)	26, 289, 561
VpaK11BI	GGWCC	1 cut(s)	72
XhoI	CTCGAG	1 cut(s)	293
XspI	CTAG	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.