pycom11g22490
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000212
Physical Location & Seq
Reverse (-)
25524010 .. 25525324
1315 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g22490.2

Sequence Viewer

Length: 996 bp
ATGCATGGAATCCAAACTTTGGTTTGCATTGCAACTCCTTGTGGGGTGGTTGAACTGGCCTCTTTGGACGTGATCAAAGAAGATTACGGTCTAGGGCATTTATCAAAGTCGCTGTTCGGATCAGACGGCAACAACAACAACAACAGGAGGCTCTCAAAGCAGCAGACCAGTCGTGAAGGCAATATACTTGATCCTATCCTAGAAAATGAACTGTTTTCAGCAGATCAAATTGAACTGACCCGGCAAGGTGGAATAAACGAAGCTGCACCTATCAATGTAGGAGGGTCATCACCAGAATCACCTTCTAACTCCGTTGGTAATTTTACCTCCGAGAATTCTAAGAACAAGACTCGATCAAAAAACCGAGGAAGGTCATCAAACAATGGAGCTGCAAGTAGACAATCACAATTGTCAAACCACGTTGTGGCCGAGAAACAGAGGAGGGAGAAACTCAACCACAGATTCTGTGTCCTCCGGTCAGTTGTTCCCAATGTGTCCAAAATGGACAGGTCCTCTTTGCTTGCCGATGCCGTGGCGTACATCAATCAACTCAAATCAAAAGTTGAGGAGTTGGAGGCCAAAGTCCAAGAACAACCACAAAAGCCTAAAGCGGGCAATAATACAAGTAACAATCTTGATCATCAATCCAGCCAAAGCACCAGCGCTATAGTTGACCAGCATCATTATTCTAATATTAATGCTAATAATAATACTATTAGTAATAGTAATAGGGCAGCTGCTGCTTCCGTTGTGGAAGTGGATGTGTACGTGAAGGTTATGGGGTCAGAAGCCAAGATACGTGTTCAGAGTCCGGATCAAGACTACCCATATGCTAAGTTGATGAATGCACTCAAGGGCCTAGGGTTACAAGTTTACCATGCAAGCATATCGAGCGTGAAAGAGTTGATGATTCAAGATGTTGTGGCAAGACTGCCTTATGGGTTCACTAGTGAGGAGGTATTGAGAAATGGTATTATTAAAGGATGGTCCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

332

Amino Acids

36.14

Weight (kDa)

8.84

Isoelectric Point (pI)

50.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 19, 424
AccI GTMKAC 1 cut(s) 397
AccIII TCCGGA 1 cut(s) 811
AciI CCGC 1 cut(s) 611
AclWI GGATC 3 cut(s) 127, 185, 822
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 1 cut(s) 334
AdeI CACNNNGTG 1 cut(s) 424
AfaI GTAC 2 cut(s) 539, 767
AfeI AGCGCT 1 cut(s) 664
AfiI CCNNNNNNNGG 3 cut(s) 19, 424, 611
AflIII ACRYGT 1 cut(s) 799
AgsI TTSAA 3 cut(s) 53, 233, 914
AhlI ACTAGT 1 cut(s) 947
AjiI CACGTC 1 cut(s) 70
AluBI AGCT 3 cut(s) 263, 389, 737
AluI AGCT 3 cut(s) 263, 389, 737
AlwI GGATC 3 cut(s) 127, 185, 822
AlwNI CAGNNNCTG 2 cut(s) 465, 740
Aor13HI TCCGGA 1 cut(s) 811
Aor51HI AGCGCT 1 cut(s) 664
AoxI GGCC 4 cut(s) 57, 426, 576, 856
ApeKI GCWGC 6 cut(s) 160, 263, 389, 734, 737, 740
ApoI RAATTY 1 cut(s) 334
AseI ATTAAT 1 cut(s) 696
AspA2I CCTAGG 1 cut(s) 859
AspLEI GCGC 1 cut(s) 665
AspS9I GGNCC 3 cut(s) 510, 856, 987
AsuC2I CCSGG 1 cut(s) 241
AsuHPI GGTGA 2 cut(s) 282, 291
AvaII GGWCC 2 cut(s) 510, 987
AvrII CCTAGG 1 cut(s) 859
BarI GAAGNNNNNNTAC 4 cut(s) 168, 200, 780, 812
BbvI GCAGC 6 cut(s) 172, 250, 376, 724, 727, 746
BccI CCATC 1 cut(s) 978
BceAI ACGGC 2 cut(s) 142, 515
BcgI CGANNNNNNTGC 4 cut(s) 152, 186, 870, 904
BclI TGATCA 2 cut(s) 72, 637
BcnI CCSGG 1 cut(s) 241
BcuI ACTAGT 1 cut(s) 947
BfaI CTAG 4 cut(s) 92, 200, 860, 948
BfmI CTRYAG 1 cut(s) 666
BfoI RGCGCY 1 cut(s) 666
BisI GCNGC 6 cut(s) 161, 264, 390, 735, 738, 741
BlnI CCTAGG 1 cut(s) 859
BlsI GCNGC 6 cut(s) 162, 265, 391, 736, 739, 742
Bme1390I CCNGG 1 cut(s) 241
Bme18I GGWCC 2 cut(s) 510, 987
BmgBI CACGTC 1 cut(s) 70
BmgT120I GGNCC 3 cut(s) 510, 856, 987
BmiI GGNNCC 1 cut(s) 989
BmrFI CCNGG 1 cut(s) 241
BmsI GCATC 2 cut(s) 517, 688
BpuEI CTTGAG 1 cut(s) 836
BpuMI CCSGG 1 cut(s) 241
BsaAI YACGTR 2 cut(s) 769, 800
BsaJI CCNNGG 3 cut(s) 364, 531, 859
BsaWI WCCGGW 2 cut(s) 474, 811
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 424, 611
Bse1I ACTGG 2 cut(s) 60, 168
Bse3DI GCAATG 1 cut(s) 27
BseAI TCCGGA 1 cut(s) 811
BseDI CCNNGG 3 cut(s) 364, 531, 859
BseGI GGATG 2 cut(s) 766, 989
BseLI CCNNNNNNNGG 3 cut(s) 19, 424, 611
BseMI GCAATG 1 cut(s) 27
BseNI ACTGG 2 cut(s) 60, 168
BseRI GAGGAG 3 cut(s) 454, 581, 968
BseXI GCAGC 6 cut(s) 172, 250, 376, 724, 727, 746
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 4 cut(s) 59, 428, 578, 858
BsiSI CCGG 3 cut(s) 241, 475, 812
BslFI GGGAC 1 cut(s) 973
BslI CCNNNNNNNGG 3 cut(s) 19, 424, 611
BsmFI GGGAC 1 cut(s) 973
BsmI GAATGC 1 cut(s) 850
BsnI GGCC 4 cut(s) 59, 428, 578, 858
Bsp13I TCCGGA 1 cut(s) 811
Bsp143I GATC 7 cut(s) 72, 119, 190, 223, 353, 637, 814
BspACI CCGC 1 cut(s) 611
BspANI GGCC 4 cut(s) 59, 428, 578, 858
BspEI TCCGGA 1 cut(s) 811
BspLI GGNNCC 1 cut(s) 989
BspPI GGATC 3 cut(s) 127, 185, 822
BsrDI GCAATG 1 cut(s) 27
BsrI ACTGG 2 cut(s) 60, 168
BssECI CCNNGG 3 cut(s) 364, 531, 859
BssMI GATC 7 cut(s) 72, 119, 190, 223, 353, 637, 814
BssT1I CCWWGG 1 cut(s) 859
Bst4CI ACNGT 2 cut(s) 89, 213
BstAPI GCANNNNNTGC 1 cut(s) 740
BstBAI YACGTR 2 cut(s) 769, 800
BstC8I GCNNGC 3 cut(s) 522, 613, 883
BstDEI CTNAG 2 cut(s) 339, 834
BstDSI CCRYGG 1 cut(s) 531
BstF5I GGATG 2 cut(s) 766, 989
BstH2I RGCGCY 1 cut(s) 666
BstHHI GCGC 1 cut(s) 665
BstKTI GATC 7 cut(s) 75, 122, 193, 226, 356, 640, 817
BstMBI GATC 7 cut(s) 72, 119, 190, 223, 353, 637, 814
BstMWI GCNNNNNNNGC 3 cut(s) 157, 740, 891
BstSCI CCNGG 1 cut(s) 239
BstSFI CTRYAG 1 cut(s) 666
BstV1I GCAGC 6 cut(s) 172, 250, 376, 724, 727, 746
BsuRI GGCC 4 cut(s) 59, 428, 578, 858
BtgI CCRYGG 1 cut(s) 531
BtrI CACGTC 1 cut(s) 70
BtsCI GGATG 2 cut(s) 766, 989
Cac8I GCNNGC 3 cut(s) 522, 613, 883
CaiI CAGNNNCTG 2 cut(s) 465, 740
CfoI GCGC 1 cut(s) 665
Cfr13I GGNCC 3 cut(s) 510, 856, 987
Csp6I GTAC 2 cut(s) 538, 766
CviAII CATG 2 cut(s) 5, 878
CviQI GTAC 2 cut(s) 538, 766
DdeI CTNAG 2 cut(s) 339, 834
DpnI GATC 7 cut(s) 74, 121, 192, 225, 355, 639, 816
DpnII GATC 7 cut(s) 72, 119, 190, 223, 353, 637, 814
DraIII CACNNNGTG 1 cut(s) 424
EaeI YGGCCR 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 859
Eco47I GGWCC 2 cut(s) 510, 987
Eco47III AGCGCT 1 cut(s) 664
EcoO109I RGGNCCY 2 cut(s) 510, 856
EcoRI GAATTC 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 859
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 859
FaeI CATG 2 cut(s) 8, 881
FaiI YATR 9 cut(s) 6, 185, 668, 779, 829, 831, 879, 887, 939
FalI AAGNNNNNCTT 2 cut(s) 919, 951
FaqI GGGAC 1 cut(s) 973
FatI CATG 2 cut(s) 4, 877
FauI CCCGC 1 cut(s) 604
FauNDI CATATG 1 cut(s) 829
FbaI TGATCA 2 cut(s) 72, 637
FblI GTMKAC 1 cut(s) 397
Fnu4HI GCNGC 6 cut(s) 161, 264, 390, 735, 738, 741
FokI GGATG 1 cut(s) 773
Fsp4HI GCNGC 6 cut(s) 161, 264, 390, 735, 738, 741
FspBI CTAG 4 cut(s) 92, 200, 860, 948
GlaI GCGC 1 cut(s) 664
GluI GCNGC 6 cut(s) 161, 264, 390, 735, 738, 741
HaeII RGCGCY 1 cut(s) 666
HaeIII GGCC 4 cut(s) 59, 428, 578, 858
HapII CCGG 3 cut(s) 241, 475, 812
HhaI GCGC 1 cut(s) 665
Hin1II CATG 2 cut(s) 8, 881
Hin6I GCGC 1 cut(s) 663
HinP1I GCGC 1 cut(s) 663
HincII GTYRAC 1 cut(s) 673
HindII GTYRAC 1 cut(s) 673
HinfI GANTC 6 cut(s) 9, 296, 349, 462, 808, 910
HpaII CCGG 3 cut(s) 241, 475, 812
HphI GGTGA 2 cut(s) 282, 291
Hpy166II GTNNAC 5 cut(s) 398, 673, 766, 874, 945
Hpy188I TCNGA 5 cut(s) 119, 124, 331, 787, 807
Hpy188III TCNNGA 5 cut(s) 173, 635, 812, 818, 914
Hpy8I GTNNAC 5 cut(s) 398, 673, 766, 874, 945
HpyAV CCTTC 4 cut(s) 170, 312, 363, 766
HpyCH4III ACNGT 2 cut(s) 89, 213
HpyCH4IV ACGT 4 cut(s) 69, 420, 768, 799
HpyCH4V TGCA 7 cut(s) 4, 27, 32, 266, 392, 848, 881
HpyF10VI GCNNNNNNNGC 3 cut(s) 157, 740, 891
HpyF3I CTNAG 2 cut(s) 339, 834
HpySE526I ACGT 4 cut(s) 69, 420, 768, 799
Hsp92II CATG 2 cut(s) 8, 881
HspAI GCGC 1 cut(s) 663
Kpn2I TCCGGA 1 cut(s) 811
Ksp22I TGATCA 2 cut(s) 72, 637
Kzo9I GATC 7 cut(s) 72, 119, 190, 223, 353, 637, 814
LmnI GCTCC 1 cut(s) 386
Lsp1109I GCAGC 6 cut(s) 172, 250, 376, 724, 727, 746
LweI GCATC 2 cut(s) 517, 688
MaeI CTAG 4 cut(s) 92, 200, 860, 948
MaeII ACGT 4 cut(s) 69, 420, 768, 799
MaeIII GTNAC 2 cut(s) 626, 864
MalI GATC 7 cut(s) 74, 121, 192, 225, 355, 639, 816
MboI GATC 7 cut(s) 72, 119, 190, 223, 353, 637, 814
MboII GAAGA 1 cut(s) 92
MfeI CAATTG 1 cut(s) 407
MluCI AATT 4 cut(s) 228, 319, 334, 407
MlyI GAGTC 2 cut(s) 343, 817
MmeI TCCRAC 1 cut(s) 552
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 811
MseI TTAA 2 cut(s) 696, 978
MspA1I CMGCKG 1 cut(s) 737
MspI CCGG 3 cut(s) 241, 475, 812
MspR9I CCNGG 1 cut(s) 241
MunI CAATTG 1 cut(s) 407
Mva1269I GAATGC 1 cut(s) 850
MwoI GCNNNNNNNGC 3 cut(s) 157, 740, 891
NciI CCSGG 1 cut(s) 241
NdeI CATATG 1 cut(s) 829
NdeII GATC 7 cut(s) 72, 119, 190, 223, 353, 637, 814
NlaIII CATG 2 cut(s) 8, 881
NlaIV GGNNCC 1 cut(s) 989
NmeAIII GCCGAG 1 cut(s) 454
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 426
PctI GAATGC 1 cut(s) 850
PfeI GAWTC 4 cut(s) 9, 296, 462, 910
PflMI CCANNNNNTGG 2 cut(s) 19, 424
PkrI GCNGC 6 cut(s) 162, 265, 391, 736, 739, 742
PleI GAGTC 2 cut(s) 343, 816
PpsI GAGTC 2 cut(s) 343, 816
Ppu21I YACGTR 2 cut(s) 769, 800
PpuMI RGGWCCY 1 cut(s) 510
PshBI ATTAAT 1 cut(s) 696
Psp5II RGGWCCY 1 cut(s) 510
PspN4I GGNNCC 1 cut(s) 989
PspPI GGNCC 3 cut(s) 510, 856, 987
PspPPI RGGWCCY 1 cut(s) 510
PstNI CAGNNNCTG 2 cut(s) 465, 740
PvuII CAGCTG 1 cut(s) 737
RsaI GTAC 2 cut(s) 539, 767
RsaNI GTAC 2 cut(s) 538, 766
SaqAI TTAA 2 cut(s) 696, 978
SatI GCNGC 6 cut(s) 161, 264, 390, 735, 738, 741
Sau3AI GATC 7 cut(s) 72, 119, 190, 223, 353, 637, 814
Sau96I GGNCC 3 cut(s) 510, 856, 987
SchI GAGTC 2 cut(s) 343, 817
ScrFI CCNGG 1 cut(s) 241
SfaNI GCATC 2 cut(s) 517, 688
SfcI CTRYAG 1 cut(s) 666
SinI GGWCC 2 cut(s) 510, 987
SmlI CTYRAG 1 cut(s) 851
SmoI CTYRAG 1 cut(s) 851
SpeI ACTAGT 1 cut(s) 947
Sse9I AATT 4 cut(s) 228, 319, 334, 407
SsiI CCGC 1 cut(s) 611
SspI AATATT 1 cut(s) 694
SspMI CTAG 4 cut(s) 92, 200, 860, 948
StyD4I CCNGG 1 cut(s) 239
StyI CCWWGG 1 cut(s) 859
TaaI ACNGT 2 cut(s) 89, 213
TaiI ACGT 4 cut(s) 72, 423, 771, 802
TaqI TCGA 2 cut(s) 352, 890
TasI AATT 4 cut(s) 228, 319, 334, 407
TfiI GAWTC 4 cut(s) 9, 296, 462, 910
Tru1I TTAA 2 cut(s) 696, 978
Tru9I TTAA 2 cut(s) 696, 978
TseI GCWGC 6 cut(s) 160, 263, 389, 734, 737, 740
TspDTI ATGAA 2 cut(s) 222, 857
TspGWI ACGGA 2 cut(s) 301, 736
Van91I CCANNNNNTGG 2 cut(s) 19, 424
VpaK11BI GGWCC 2 cut(s) 510, 987
VspI ATTAAT 1 cut(s) 696
XapI RAATTY 1 cut(s) 334
XmaJI CCTAGG 1 cut(s) 859
XmiI GTMKAC 1 cut(s) 397
XspI CTAG 4 cut(s) 92, 200, 860, 948
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.