Rmu_sc0000854.1_g000018
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000854.1
OG0000212
Physical Location & Seq
Reverse (-)
82340 .. 87035
4696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000854.1_g000018.1.cds

Sequence Viewer

Length: 621 bp
atgaagaagaatccgagcagaccggtggcgacattcaaggatgagatatcctccggcaaaaacctgacagcccgacgcacagaaccagaaactcaactctatttcatctccggcctctcggcgacggcgacatctctgttctctgcaactgtgaaggagtcactggcgactcactccctcactcaatctttcgccgtaggggatggctctgttcttggcaagaccttcggctccgggacatcaatctggctgagcggggcccacgagcttcagttcaacaactgcgagagagccaaagaggcccaaatccacaggatcgagaccttgatctgcatcccaactttcgacggtcaatccaagtcgttgttcgggtcggatcagcccgacctggaaacaaggcctctcgagttcatcaaccggaacttctccatttttgacatcggcatcattgccggcgtgcaggaagaggatcacagctcatacaatgacgacaagaaacatgtttctggttctagcaagaagaagaacggagctccgaacccaaacccgaacttcgcagattccgactgccagatgaaaagagagccgaagaaactgggccggaaatccgagctgggctga

Protein Analysis

206

Amino Acids

22.54

Weight (kDa)

7.73

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 255
AciI CCGC 1 cut(s) 255
AclWI GGATC 3 cut(s) 323, 384, 477
AcuI CTGAAG 1 cut(s) 254
AflIII ACRYGT 1 cut(s) 499
AgeI ACCGGT 1 cut(s) 22
AgsI TTSAA 2 cut(s) 37, 277
AjnI CCWGG 1 cut(s) 387
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
AluBI AGCT 4 cut(s) 268, 477, 533, 613
AluI AGCT 4 cut(s) 268, 477, 533, 613
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 1 cut(s) 314
AlwI GGATC 3 cut(s) 323, 384, 477
Ama87I CYCGRG 1 cut(s) 404
AoxI GGCC 5 cut(s) 112, 258, 300, 398, 598
ApaI GGGCCC 1 cut(s) 262
AsiGI ACCGGT 1 cut(s) 22
AspS9I GGNCC 4 cut(s) 258, 259, 301, 598
AsuC2I CCSGG 1 cut(s) 235
AvaI CYCGRG 1 cut(s) 404
BaeGI GKGCMC 1 cut(s) 262
BanII GRGCYC 2 cut(s) 262, 535
BauI CACGAG 1 cut(s) 263
Bbv12I GWGCWC 1 cut(s) 535
BccI CCATC 1 cut(s) 197
BceAI ACGGC 2 cut(s) 141, 179
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 1 cut(s) 389
BcnI CCSGG 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 314
BfaI CTAG 1 cut(s) 513
BglI GCCNNNNNGGC 1 cut(s) 299
BlpI GCTNAGC 1 cut(s) 251
Bme1390I CCNGG 2 cut(s) 235, 389
BmeT110I CYCGRG 1 cut(s) 404
BmgT120I GGNCC 4 cut(s) 258, 259, 301, 598
BmiI GGNNCC 3 cut(s) 232, 259, 260
BmrFI CCNGG 2 cut(s) 235, 389
BmrI ACTGGG 1 cut(s) 605
BmsI GCATC 2 cut(s) 342, 453
BmuI ACTGGG 1 cut(s) 605
BplI GAGNNNNNCTC 2 cut(s) 35, 67
Bpu1102I GCTNAGC 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 235
BsaBI GATNNNNATC 1 cut(s) 332
BsaI GGTCTC 1 cut(s) 314
BsaWI WCCGGW 2 cut(s) 22, 417
Bse118I RCCGGY 2 cut(s) 22, 452
Bse1I ACTGG 2 cut(s) 168, 600
Bse3DI GCAATG 1 cut(s) 447
Bse8I GATNNNNATC 1 cut(s) 332
BseBI CCWGG 1 cut(s) 389
BseGI GGATG 3 cut(s) 46, 208, 333
BseJI GATNNNNATC 1 cut(s) 332
BseMI GCAATG 1 cut(s) 447
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 2 cut(s) 168, 600
BseSI GKGCMC 1 cut(s) 262
BseYI CCCAGC 1 cut(s) 613
BsgI GTGCAG 1 cut(s) 479
BshFI GGCC 5 cut(s) 114, 260, 302, 400, 600
BshTI ACCGGT 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 535
BsiHKCI CYCGRG 1 cut(s) 404
BsiSI CCGG 7 cut(s) 23, 54, 111, 234, 418, 453, 601
BslFI GGGAC 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 314
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 5 cut(s) 114, 260, 302, 400, 600
Bso31I GGTCTC 1 cut(s) 314
BsoBI CYCGRG 1 cut(s) 404
Bsp120I GGGCCC 1 cut(s) 258
Bsp1286I GDGCHC 2 cut(s) 262, 535
Bsp143I GATC 4 cut(s) 315, 327, 376, 469
Bsp1720I GCTNAGC 1 cut(s) 251
BspACI CCGC 1 cut(s) 255
BspANI GGCC 5 cut(s) 114, 260, 302, 400, 600
BspCNI CTCAG 1 cut(s) 243
BspLI GGNNCC 3 cut(s) 232, 259, 260
BspPI GGATC 3 cut(s) 323, 384, 477
BspTNI GGTCTC 1 cut(s) 314
BsrBI CCGCTC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 447
BsrFI RCCGGY 2 cut(s) 22, 452
BsrI ACTGG 2 cut(s) 168, 600
BssAI RCCGGY 2 cut(s) 22, 452
BssMI GATC 4 cut(s) 315, 327, 376, 469
BssSI CACGAG 1 cut(s) 263
Bst2BI CACGAG 1 cut(s) 263
Bst2UI CCWGG 1 cut(s) 389
Bst4CI ACNGT 2 cut(s) 151, 350
Bst6I CTCTTC 1 cut(s) 459
BstC8I GCNNGC 2 cut(s) 454, 458
BstDEI CTNAG 1 cut(s) 251
BstF5I GGATG 3 cut(s) 46, 208, 333
BstKTI GATC 4 cut(s) 318, 330, 379, 472
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 4 cut(s) 315, 327, 376, 469
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstNI CCWGG 1 cut(s) 389
BstNSI RCATGY 1 cut(s) 503
BstSCI CCNGG 2 cut(s) 233, 387
BstSLI GKGCMC 1 cut(s) 262
BsuRI GGCC 5 cut(s) 114, 260, 302, 400, 600
BtsCI GGATG 3 cut(s) 46, 208, 333
BtsIMutI CAGTG 1 cut(s) 161
Cac8I GCNNGC 2 cut(s) 454, 458
Cfr10I RCCGGY 2 cut(s) 22, 452
Cfr13I GGNCC 4 cut(s) 258, 259, 301, 598
CseI GACGC 1 cut(s) 84
CspAI ACCGGT 1 cut(s) 22
CviAII CATG 1 cut(s) 500
DdeI CTNAG 1 cut(s) 251
DpnI GATC 4 cut(s) 317, 329, 378, 471
DpnII GATC 4 cut(s) 315, 327, 376, 469
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Ecl136II GAGCTC 1 cut(s) 533
Eco147I AGGCCT 1 cut(s) 400
Eco24I GRGCYC 2 cut(s) 262, 535
Eco31I GGTCTC 1 cut(s) 314
Eco32I GATATC 1 cut(s) 48
Eco53kI GAGCTC 1 cut(s) 533
Eco57I CTGAAG 1 cut(s) 254
Eco88I CYCGRG 1 cut(s) 404
EcoICRI GAGCTC 1 cut(s) 533
EcoO109I RGGNCCY 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 387
EcoRV GATATC 1 cut(s) 48
EcoT38I GRGCYC 2 cut(s) 262, 535
FaeI CATG 1 cut(s) 503
FaiI YATR 2 cut(s) 481, 501
FaqI GGGAC 1 cut(s) 250
FatI CATG 1 cut(s) 499
FauI CCCGC 1 cut(s) 248
FokI GGATG 3 cut(s) 53, 215, 320
FriOI GRGCYC 2 cut(s) 262, 535
FspBI CTAG 1 cut(s) 513
GsaI CCCAGC 1 cut(s) 617
HaeIII GGCC 5 cut(s) 114, 260, 302, 400, 600
HapII CCGG 7 cut(s) 23, 54, 111, 234, 418, 453, 601
HgaI GACGC 1 cut(s) 84
Hin1II CATG 1 cut(s) 503
HinfI GANTC 4 cut(s) 10, 158, 169, 560
HpaII CCGG 7 cut(s) 23, 54, 111, 234, 418, 453, 601
Hpy188I TCNGA 5 cut(s) 15, 376, 537, 565, 610
Hpy188III TCNNGA 2 cut(s) 319, 404
Hpy99I CGWCG 3 cut(s) 78, 127, 350
HpyAV CCTTC 2 cut(s) 148, 235
HpyCH4III ACNGT 2 cut(s) 151, 350
HpyCH4V TGCA 3 cut(s) 146, 333, 460
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpyF3I CTNAG 1 cut(s) 251
Hsp92II CATG 1 cut(s) 503
KroI GCCGGC 1 cut(s) 452
KroNI GCCGGC 1 cut(s) 454
Kzo9I GATC 4 cut(s) 315, 327, 376, 469
LmnI GCTCC 3 cut(s) 236, 530, 538
LweI GCATC 2 cut(s) 342, 453
MaeI CTAG 1 cut(s) 513
MaeIII GTNAC 1 cut(s) 159
MalI GATC 4 cut(s) 317, 329, 378, 471
MbiI CCGCTC 1 cut(s) 255
MboI GATC 4 cut(s) 315, 327, 376, 469
MboII GAAGA 6 cut(s) 16, 19, 476, 532, 535, 601
MhlI GDGCHC 2 cut(s) 262, 535
MlyI GAGTC 2 cut(s) 163, 167
MmeI TCCRAC 2 cut(s) 354, 588
MnlI CCTC 6 cut(s) 61, 125, 188, 292, 411, 460
MroNI GCCGGC 1 cut(s) 452
MspI CCGG 7 cut(s) 23, 54, 111, 234, 418, 453, 601
MspR9I CCNGG 2 cut(s) 235, 389
MvaI CCWGG 1 cut(s) 389
MwoI GCNNNNNNNGC 1 cut(s) 299
NaeI GCCGGC 1 cut(s) 454
NciI CCSGG 1 cut(s) 235
NdeII GATC 4 cut(s) 315, 327, 376, 469
NgoMIV GCCGGC 1 cut(s) 452
NlaIII CATG 1 cut(s) 503
NlaIV GGNNCC 3 cut(s) 232, 259, 260
NmeAIII GCCGAG 1 cut(s) 98
NmuCI GTSAC 1 cut(s) 159
NspI RCATGY 1 cut(s) 503
PaeR7I CTCGAG 1 cut(s) 404
PceI AGGCCT 1 cut(s) 400
PciI ACATGT 1 cut(s) 499
PcsI WCGNNNNNNNCGW 2 cut(s) 125, 561
PdiI GCCGGC 1 cut(s) 454
PfeI GAWTC 2 cut(s) 10, 560
PfoI TCCNGGA 1 cut(s) 233
PinAI ACCGGT 1 cut(s) 22
PleI GAGTC 2 cut(s) 163, 166
PpsI GAGTC 2 cut(s) 163, 166
PscI ACATGT 1 cut(s) 499
Psp124BI GAGCTC 1 cut(s) 535
Psp6I CCWGG 1 cut(s) 387
PspFI CCCAGC 1 cut(s) 613
PspGI CCWGG 1 cut(s) 387
PspN4I GGNNCC 3 cut(s) 232, 259, 260
PspOMI GGGCCC 1 cut(s) 258
PspPI GGNCC 4 cut(s) 258, 259, 301, 598
SacI GAGCTC 1 cut(s) 535
Sau3AI GATC 4 cut(s) 315, 327, 376, 469
Sau96I GGNCC 4 cut(s) 258, 259, 301, 598
SchI GAGTC 2 cut(s) 163, 167
ScrFI CCNGG 2 cut(s) 235, 389
SduI GDGCHC 2 cut(s) 262, 535
SetI ASST 8 cut(s) 66, 227, 270, 326, 390, 479, 535, 615
SfaNI GCATC 2 cut(s) 342, 453
Sfr274I CTCGAG 1 cut(s) 404
SlaI CTCGAG 1 cut(s) 404
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
SseBI AGGCCT 1 cut(s) 400
SsiI CCGC 1 cut(s) 255
SspMI CTAG 1 cut(s) 513
SstI GAGCTC 1 cut(s) 535
StuI AGGCCT 1 cut(s) 400
StyD4I CCNGG 2 cut(s) 233, 387
TaaI ACNGT 2 cut(s) 151, 350
TaqI TCGA 3 cut(s) 318, 345, 405
TfiI GAWTC 2 cut(s) 10, 560
TscAI CASTG 1 cut(s) 168
TseFI GTSAC 1 cut(s) 159
Tsp45I GTSAC 1 cut(s) 159
TspDTI ATGAA 4 cut(s) 17, 94, 400, 590
TspGWI ACGGA 1 cut(s) 543
TspRI CASTG 1 cut(s) 168
XceI RCATGY 1 cut(s) 503
XhoI CTCGAG 1 cut(s) 404
XspI CTAG 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.