Rmu_sc0002888.1_g000014
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002888.1
OG0000212
Physical Location & Seq
Forward (+)
61250 .. 65237
3988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002888.1_g000014.1.cds

Sequence Viewer

Length: 855 bp
atggccaacacagatcgaagacggttcatcaaccaaatcccagacgaggctgcatcaaccaaatcacagacggggcctgctgcatcaaccaaatcgaaaaccgcaagacgcgatgtttctgccttctgggttggcgatgtttatgggttcgcgtcttcacgatgtttgagggaggttgtcggtttttccgtctggttcaacaactgtgagagagccaaagaggcccaaatccacaagatcgagaccttgatctgcatcccaacttccgacggtgttcttgaaatgggttcctccggtttgatcagagagaactgggggttgatccagcaagtcaagtcgttgtttgggtcggatcagcctgacctggaaacaagaccgctcgagttcatcaactggaacttctccattttcgacatcggcatcattgccggcgtacaggaagaggatcacagctcgtacaatgacgacaagaaacatgtttttggttctagcaagaagaagaaaggagctccgaacccaaactcggacttcgcagattctgactgccagatgaaaagagcaccgaagaaacggggccggaaacccaggttgcgccgagacacacctctcaaccacgtggaggcggagcggcagcggcgggagaagctcacctcgcaagggcggcgttggaagcaagggagtgaacccggcgagagagtttcggctgctacagcatcgaacgacgattgttttctttctcaagcctttggctgggtcacgataggggtggaggatcctggttatggatctgatgggtgtgagcggctgggatggtttcactccgaggtggaaggggataggaaggtggagagttaa

Protein Analysis

284

Amino Acids

31.85

Weight (kDa)

8.17

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00870
fragaria_vesca FvH4_5g10850 FvH4_5g10851 FvH4_5g23290 FvH4_7g17380
malus_domestica MD00G1137900.v1.1 MD01G1086800.v1.1 MD01G1086900.v1.1 MD03G1096500.v1.1 MD06G1119900.v1.1 MD06G1120000.v1.1 MD06G1120100.v1.1 MD06G1120200.v1.1 MD11G1120400.v1.1 MD11G1145000.v1.1 MD11G1254000.v1.1 MD11G1254100.v1.1 MD14G1126900.v1.1 MD14G1127000.v1.1 MD14G1137200.v1.1
prunus_persica Prupe.2G195300_v2.0.a1 Prupe.2G195300_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087600_v2.0.a1 Prupe.5G087900_v2.0.a1 Prupe.5G130300_v2.0.a1 Prupe.5G130400_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130500_v2.0.a1 Prupe.5G130600_v2.0.a1 Prupe.5G130700_v2.0.a1
pyrus_communis pycom01g09980 pycom06g11100 pycom06g11120 pycom06g11150 pycom11g10170 pycom11g22490 pycom14g11190 pycom14g11210
rosa_chinensis RchiOBHm_Chr1g0360811 RchiOBHm_Chr5g0055891 RchiOBHm_Chr6g0281801 RchiOBHm_Chr7g0187141 RchiOBHm_Chr7g0187261 RchiOBHm_Chr7g0212241 RchiOBHm_Chr7g0228701
rosa_laevigata RLG00000002910 RLG00000002911 RLG00000004796 RLG00000004799 RLG00000027784
rosa_multiflora Rmu_sc0000340.1_g000036 Rmu_sc0000378.1_g000013 Rmu_sc0000441.1_g000071 Rmu_sc0000559.1_g000036 Rmu_sc0000637.1_g000017 Rmu_sc0000765.1_g000001 Rmu_sc0000785.1_g000012 Rmu_sc0000854.1_g000018 Rmu_sc0000959.1_g000018 Rmu_sc0001018.1_g000022 Rmu_sc0001136.1_g000078 Rmu_sc0001433.1_g000037 Rmu_sc0001687.1_g000010 Rmu_sc0001716.1_g000014 Rmu_sc0001758.1_g000023 Rmu_sc0001758.1_g000031 Rmu_sc0001826.1_g000009 Rmu_sc0001850.1_g000027 Rmu_sc0001911.1_g000019 Rmu_sc0001937.1_g000001 Rmu_sc0002283.1_g000088 Rmu_sc0002532.1_g000058 Rmu_sc0002571.1_g000032 Rmu_sc0002888.1_g000014 Rmu_sc0002939.1_g000019 Rmu_sc0003197.1_g000007 Rmu_sc0003546.1_g000034 Rmu_sc0004002.1_g000003 Rmu_sc0004145.1_g000003 Rmu_sc0004301.1_g000013 Rmu_sc0004603.1_g000002 Rmu_sc0004748.1_g000007 Rmu_sc0004842.1_g000002 Rmu_sc0004990.1_g000012 Rmu_sc0005017.1_g000006 Rmu_sc0006343.1_g000001 Rmu_sc0006836.1_g000017 Rmu_sc0007491.1_g000003 Rmu_sc0008192.1_g000011 Rmu_sc0008877.1_g000007 Rmu_sc0010621.1_g000006 Rmu_sc0013354.1_g000017 Rmu_sc0013486.1_g000001 Rmu_sc0016511.1_g000001 Rmu_sc0021179.1_g000001 Rmu_sc0026563.1_g000001 Rmu_sc0027421.1_g000001 Rmu_sc0037114.1_g000001 Rmu_ssc0000022.1_g000039 Rmu_ssc0000050.1_g000048 Rmu_ssc0000141.1_g000004 Rmu_ssc0000280.1_g000002 Rmu_ssc0000387.1_g000024 Rmu_ssc0000459.1_g000030
rosa_roxburghii Rroxscaffold_3G00247010 Rroxscaffold_3G00267630 Rroxscaffold_3G00267670 Rroxscaffold_4G00295790 Rroxscaffold_4G00305930 Rroxscaffold_5G00346440 Rroxscaffold_7G00211970
rosa_rugosa Rorug01G0281800 Rorug02G0258400 Rorug04G0057400 Rorug04G0362000 Rorug04G0437300 Rorug06G0161400 Rorug06G0213300 Rorug06G0478800 Rorug06G0479300 Rorug06G0479300 Rorug07G0132200 Rorug07G0321200
rosa_samantha Rh1AG293700 Rh1BG258400 Rh1CG276200 Rh1DG288700 Rh7AG084400 Rh7AG084900 Rh7AG265100 Rh7BG078100 Rh7BG078600 Rh7CG085500 Rh7CG085800 Rh7CG281900 Rh7DG086500 Rh7DG086900 Rh7DG272300
rosa_wichuraiana Rw1G025990 Rw7G007440 Rw7G007460 Rw7G022700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 379, 628, 802
AccII CGCG 2 cut(s) 111, 152
AciI CCGC 8 cut(s) 102, 377, 623, 628, 634, 637, 661, 802
AclWI GGATC 6 cut(s) 316, 360, 453, 767, 780, 793
AcoI YGGCCR 1 cut(s) 3
AcvI CACGTG 1 cut(s) 616
AfaI GTAC 2 cut(s) 435, 458
AfiI CCNNNNNNNGG 6 cut(s) 46, 523, 619, 657, 750, 782
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 2 cut(s) 199, 281
AjnI CCWGG 3 cut(s) 363, 584, 775
AluBI AGCT 3 cut(s) 453, 509, 646
AluI AGCT 3 cut(s) 453, 509, 646
Alw21I GWGCWC 2 cut(s) 511, 562
Alw26I GTCTC 2 cut(s) 236, 591
AlwI GGATC 6 cut(s) 316, 360, 453, 767, 780, 793
AlwNI CAGNNNCTG 1 cut(s) 539
Ama87I CYCGRG 1 cut(s) 380
AoxI GGCC 4 cut(s) 3, 74, 222, 574
ApeKI GCWGC 4 cut(s) 50, 80, 631, 704
AspLEI GCGC 1 cut(s) 594
AspS9I GGNCC 3 cut(s) 74, 223, 574
AsuC2I CCSGG 1 cut(s) 687
AsuHPI GGTGA 1 cut(s) 640
AvaI CYCGRG 1 cut(s) 380
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 772
BanII GRGCYC 1 cut(s) 511
BbrPI CACGTG 1 cut(s) 616
BbsI GAAGAC 2 cut(s) 25, 147
Bbv12I GWGCWC 2 cut(s) 511, 562
BbvI GCAGC 4 cut(s) 37, 67, 643, 691
BccI CCATC 2 cut(s) 785, 804
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 3 cut(s) 365, 586, 777
BclI TGATCA 1 cut(s) 300
BcnI CCSGG 1 cut(s) 687
BcoDI GTCTC 2 cut(s) 236, 591
BfaI CTAG 1 cut(s) 489
BfmI CTRYAG 1 cut(s) 708
BglI GCCNNNNNGGC 1 cut(s) 221
BisI GCNGC 8 cut(s) 51, 81, 629, 632, 635, 662, 705, 803
BlsI GCNGC 8 cut(s) 52, 82, 630, 633, 636, 663, 706, 804
Bme1390I CCNGG 4 cut(s) 365, 586, 687, 777
BmeT110I CYCGRG 1 cut(s) 380
BmgT120I GGNCC 3 cut(s) 74, 223, 574
BmiI GGNNCC 4 cut(s) 75, 289, 575, 774
BmrFI CCNGG 4 cut(s) 365, 586, 687, 777
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 5 cut(s) 62, 92, 264, 429, 722
BmuI ACTGGG 1 cut(s) 322
BpiI GAAGAC 2 cut(s) 25, 147
BpuEI CTTGAG 1 cut(s) 723
BpuMI CCSGG 1 cut(s) 687
BsaAI YACGTR 1 cut(s) 616
BsaBI GATNNNNATC 1 cut(s) 254
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 2 cut(s) 584, 822
BsaWI WCCGGW 1 cut(s) 293
Bsc4I CCNNNNNNNGG 6 cut(s) 46, 523, 619, 657, 750, 782
Bse118I RCCGGY 1 cut(s) 428
Bse1I ACTGG 2 cut(s) 317, 398
Bse3DI GCAATG 1 cut(s) 423
Bse8I GATNNNNATC 1 cut(s) 254
BseBI CCWGG 3 cut(s) 365, 586, 777
BseDI CCNNGG 2 cut(s) 584, 822
BseGI GGATG 2 cut(s) 255, 815
BseJI GATNNNNATC 1 cut(s) 254
BseLI CCNNNNNNNGG 6 cut(s) 46, 523, 619, 657, 750, 782
BseMI GCAATG 1 cut(s) 423
BseNI ACTGG 2 cut(s) 317, 398
BseXI GCAGC 4 cut(s) 37, 67, 643, 691
BseYI CCCAGC 2 cut(s) 750, 805
Bsh1236I CGCG 2 cut(s) 111, 152
BshFI GGCC 4 cut(s) 5, 76, 224, 576
BsiHKAI GWGCWC 2 cut(s) 511, 562
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 4 cut(s) 294, 429, 577, 687
BslI CCNNNNNNNGG 6 cut(s) 46, 523, 619, 657, 750, 782
BsmAI GTCTC 2 cut(s) 236, 591
BsnI GGCC 4 cut(s) 5, 76, 224, 576
Bso31I GGTCTC 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 380
Bsp1286I GDGCHC 2 cut(s) 511, 562
Bsp143I GATC 9 cut(s) 13, 237, 249, 300, 321, 352, 445, 772, 785
BspACI CCGC 8 cut(s) 102, 377, 623, 628, 634, 637, 661, 802
BspANI GGCC 4 cut(s) 5, 76, 224, 576
BspFNI CGCG 2 cut(s) 111, 152
BspLI GGNNCC 4 cut(s) 75, 289, 575, 774
BspPI GGATC 6 cut(s) 316, 360, 453, 767, 780, 793
BspTNI GGTCTC 1 cut(s) 236
BsrBI CCGCTC 3 cut(s) 379, 628, 802
BsrDI GCAATG 1 cut(s) 423
BsrFI RCCGGY 1 cut(s) 428
BsrI ACTGG 2 cut(s) 317, 398
BssAI RCCGGY 1 cut(s) 428
BssECI CCNNGG 2 cut(s) 584, 822
BssMI GATC 9 cut(s) 13, 237, 249, 300, 321, 352, 445, 772, 785
Bst2UI CCWGG 3 cut(s) 365, 586, 777
Bst4CI ACNGT 3 cut(s) 24, 206, 272
Bst6I CTCTTC 1 cut(s) 435
BstBAI YACGTR 1 cut(s) 616
BstC8I GCNNGC 2 cut(s) 78, 430
BstF5I GGATG 2 cut(s) 255, 815
BstFNI CGCG 2 cut(s) 111, 152
BstHHI GCGC 1 cut(s) 594
BstKTI GATC 9 cut(s) 16, 240, 252, 303, 324, 355, 448, 775, 788
BstMAI GTCTC 2 cut(s) 236, 591
BstMBI GATC 9 cut(s) 13, 237, 249, 300, 321, 352, 445, 772, 785
BstMWI GCNNNNNNNGC 7 cut(s) 221, 634, 643, 652, 661, 670, 710
BstNI CCWGG 3 cut(s) 365, 586, 777
BstNSI RCATGY 1 cut(s) 479
BstSCI CCNGG 4 cut(s) 363, 584, 685, 775
BstSFI CTRYAG 1 cut(s) 708
BstUI CGCG 2 cut(s) 111, 152
BstV1I GCAGC 4 cut(s) 37, 67, 643, 691
BstV2I GAAGAC 2 cut(s) 25, 147
BstX2I RGATCY 2 cut(s) 772, 785
BstYI RGATCY 2 cut(s) 772, 785
BsuRI GGCC 4 cut(s) 5, 76, 224, 576
BtgZI GCGATG 2 cut(s) 126, 150
BtsCI GGATG 2 cut(s) 255, 815
Cac8I GCNNGC 2 cut(s) 78, 430
CaiI CAGNNNCTG 1 cut(s) 539
CfoI GCGC 1 cut(s) 594
Cfr10I RCCGGY 1 cut(s) 428
Cfr13I GGNCC 3 cut(s) 74, 223, 574
CseI GACGC 2 cut(s) 117, 141
Csp6I GTAC 2 cut(s) 434, 457
CviAII CATG 1 cut(s) 476
CviQI GTAC 2 cut(s) 434, 457
DpnI GATC 9 cut(s) 15, 239, 251, 302, 323, 354, 447, 774, 787
DpnII GATC 9 cut(s) 13, 237, 249, 300, 321, 352, 445, 772, 785
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
EciI GGCGGA 1 cut(s) 638
Ecl136II GAGCTC 1 cut(s) 509
Eco24I GRGCYC 1 cut(s) 511
Eco31I GGTCTC 1 cut(s) 236
Eco53kI GAGCTC 1 cut(s) 509
Eco72I CACGTG 1 cut(s) 616
Eco88I CYCGRG 1 cut(s) 380
EcoICRI GAGCTC 1 cut(s) 509
EcoO109I RGGNCCY 1 cut(s) 74
EcoRII CCWGG 3 cut(s) 363, 584, 775
EcoT38I GRGCYC 1 cut(s) 511
FaeI CATG 1 cut(s) 479
FaiI YATR 3 cut(s) 144, 477, 783
FatI CATG 1 cut(s) 475
FauI CCCGC 1 cut(s) 630
FbaI TGATCA 1 cut(s) 300
Fnu4HI GCNGC 8 cut(s) 51, 81, 629, 632, 635, 662, 705, 803
FokI GGATG 2 cut(s) 242, 822
FriOI GRGCYC 1 cut(s) 511
Fsp4HI GCNGC 8 cut(s) 51, 81, 629, 632, 635, 662, 705, 803
FspBI CTAG 1 cut(s) 489
GlaI GCGC 1 cut(s) 593
GluI GCNGC 8 cut(s) 51, 81, 629, 632, 635, 662, 705, 803
GsaI CCCAGC 2 cut(s) 754, 809
HaeIII GGCC 4 cut(s) 5, 76, 224, 576
HapII CCGG 4 cut(s) 294, 429, 577, 687
HgaI GACGC 2 cut(s) 117, 141
HhaI GCGC 1 cut(s) 594
Hin1II CATG 1 cut(s) 479
Hin6I GCGC 1 cut(s) 592
HinP1I GCGC 1 cut(s) 592
HinfI GANTC 1 cut(s) 536
HpaII CCGG 4 cut(s) 294, 429, 577, 687
HphI GGTGA 1 cut(s) 640
Hpy166II GTNNAC 1 cut(s) 683
Hpy188I TCNGA 8 cut(s) 268, 305, 352, 513, 526, 541, 790, 823
Hpy188III TCNNGA 4 cut(s) 159, 241, 278, 757
Hpy8I GTNNAC 1 cut(s) 683
Hpy99I CGWCG 2 cut(s) 272, 725
HpyAV CCTTC 3 cut(s) 133, 824, 835
HpyCH4III ACNGT 3 cut(s) 24, 206, 272
HpyCH4IV ACGT 1 cut(s) 615
HpyCH4V TGCA 3 cut(s) 53, 83, 255
HpyF10VI GCNNNNNNNGC 7 cut(s) 221, 634, 643, 652, 661, 670, 710
HpySE526I ACGT 1 cut(s) 615
Hsp92II CATG 1 cut(s) 479
HspAI GCGC 1 cut(s) 592
KroI GCCGGC 1 cut(s) 428
KroNI GCCGGC 1 cut(s) 430
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 9 cut(s) 13, 237, 249, 300, 321, 352, 445, 772, 785
LmnI GCTCC 3 cut(s) 506, 514, 625
Lsp1109I GCAGC 4 cut(s) 37, 67, 643, 691
LweI GCATC 5 cut(s) 62, 92, 264, 429, 722
MaeI CTAG 1 cut(s) 489
MaeII ACGT 1 cut(s) 615
MaeIII GTNAC 1 cut(s) 754
MalI GATC 9 cut(s) 15, 239, 251, 302, 323, 354, 447, 774, 787
MbiI CCGCTC 3 cut(s) 379, 628, 802
MboI GATC 9 cut(s) 13, 237, 249, 300, 321, 352, 445, 772, 785
MboII GAAGA 6 cut(s) 30, 147, 452, 508, 511, 577
MflI RGATCY 2 cut(s) 772, 785
MhlI GDGCHC 2 cut(s) 511, 562
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 3 cut(s) 291, 330, 647
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 428
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 853
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 634
MspI CCGG 4 cut(s) 294, 429, 577, 687
MspR9I CCNGG 4 cut(s) 365, 586, 687, 777
MvaI CCWGG 3 cut(s) 365, 586, 777
MvnI CGCG 2 cut(s) 111, 152
MwoI GCNNNNNNNGC 7 cut(s) 221, 634, 643, 652, 661, 670, 710
NaeI GCCGGC 1 cut(s) 430
NciI CCSGG 1 cut(s) 687
NdeII GATC 9 cut(s) 13, 237, 249, 300, 321, 352, 445, 772, 785
NgoMIV GCCGGC 1 cut(s) 428
NlaIII CATG 1 cut(s) 479
NlaIV GGNNCC 4 cut(s) 75, 289, 575, 774
NmeAIII GCCGAG 1 cut(s) 620
NmuCI GTSAC 1 cut(s) 754
NspI RCATGY 1 cut(s) 479
PaeR7I CTCGAG 1 cut(s) 380
PciI ACATGT 1 cut(s) 475
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PdiI GCCGGC 1 cut(s) 430
PfeI GAWTC 1 cut(s) 536
PkrI GCNGC 8 cut(s) 52, 82, 630, 633, 636, 663, 706, 804
PmaCI CACGTG 1 cut(s) 616
PmlI CACGTG 1 cut(s) 616
Ppu21I YACGTR 1 cut(s) 616
PscI ACATGT 1 cut(s) 475
Psp124BI GAGCTC 1 cut(s) 511
Psp6I CCWGG 3 cut(s) 363, 584, 775
PspCI CACGTG 1 cut(s) 616
PspFI CCCAGC 2 cut(s) 750, 805
PspGI CCWGG 3 cut(s) 363, 584, 775
PspN4I GGNNCC 4 cut(s) 75, 289, 575, 774
PspPI GGNCC 3 cut(s) 74, 223, 574
PspXI VCTCGAGB 1 cut(s) 380
PstNI CAGNNNCTG 1 cut(s) 539
PsuI RGATCY 2 cut(s) 772, 785
RsaI GTAC 2 cut(s) 435, 458
RsaNI GTAC 2 cut(s) 434, 457
SacI GAGCTC 1 cut(s) 511
SaqAI TTAA 1 cut(s) 853
SatI GCNGC 8 cut(s) 51, 81, 629, 632, 635, 662, 705, 803
Sau3AI GATC 9 cut(s) 13, 237, 249, 300, 321, 352, 445, 772, 785
Sau96I GGNCC 3 cut(s) 74, 223, 574
ScrFI CCNGG 4 cut(s) 365, 586, 687, 777
SduI GDGCHC 2 cut(s) 511, 562
SfaNI GCATC 5 cut(s) 62, 92, 264, 429, 722
SfcI CTRYAG 1 cut(s) 708
Sfr274I CTCGAG 1 cut(s) 380
SlaI CTCGAG 1 cut(s) 380
SmlI CTYRAG 2 cut(s) 380, 738
SmoI CTYRAG 2 cut(s) 380, 738
SsiI CCGC 8 cut(s) 102, 377, 623, 628, 634, 637, 661, 802
SspMI CTAG 1 cut(s) 489
SstI GAGCTC 1 cut(s) 511
StyD4I CCNGG 4 cut(s) 363, 584, 685, 775
TaaI ACNGT 3 cut(s) 24, 206, 272
TaiI ACGT 1 cut(s) 618
TaqI TCGA 6 cut(s) 16, 95, 240, 381, 411, 716
TauI GCSGC 4 cut(s) 631, 637, 664, 805
TfiI GAWTC 1 cut(s) 536
Tru1I TTAA 1 cut(s) 853
Tru9I TTAA 1 cut(s) 853
TseFI GTSAC 1 cut(s) 754
TseI GCWGC 4 cut(s) 50, 80, 631, 704
Tsp45I GTSAC 1 cut(s) 754
TspDTI ATGAA 3 cut(s) 16, 376, 566
TspGWI ACGGA 1 cut(s) 178
XceI RCATGY 1 cut(s) 479
XhoI CTCGAG 1 cut(s) 380
XspI CTAG 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.